AT3G44130

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
15881870 .. 15883638
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44130.1

Sequence Viewer

Length: 942 bp
ATGGCGTCAGGGAACCTTCCGTGGGAGTTGGAGGAAGAGATATTGTGTCGGCTTCCACTTGGATCTCTTGTTCGGCTAAGATCCGTATGTAAACACTGGAACGATTTTTTCAACGACAAATGGTTCATCAAGAAAAGTTTGGGTTGTGCACGTCCCCAATTCATAATCCTGCCCGAATCCAAGATTTATTCGATAGGAACCATCGGTCTGGACGGCGTTGATCCGAAGATAGAGGTGCGTGAGCTAGCTTGTCAGTTTCATTTTGAGGCTGAGAAGTGGGCATTTACCGCGGCTTGCGATGGATTATTGTTTCGTGACTTTTGGAATCAAGGGGTTACCATTTGGAATCCATGGTTAAGACAGGTTGGGTGGATCGAGTATAAGGAGAACAGAGATTTCCGTTTTTGCGGTGTAGGATACGATGCTGGTAAACCCGAAAAGGGCTACAAGATCTTTGGGTATTTTAATCGTTTCTATGACACTAAACTGAAAATCGACCATAGATTTGCGATCTTTGAATGTGCGTCTCAAGCAGTTAAGTTCATTGATTCCCCGGAATGGCCAATGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGGAATTTGTATTGGACTGCTTACAATGAAGAGACTCGTGAGCATTTTCTCGGAAGCTTTAATTTCTCCACGGAAATATCCATGCGCTTTTGTCTCCTTCCTTGTGCGAAGCATGTTTCTGGCTTACGAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCGGTTTGCATTGTTAAAGCAATCTCGTATATCAAAGGATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAATGCTGAGAAGGCTTGTTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGGAAAAGTTGAAAAAGAGTATGAAACGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

313

Amino Acids

36.44

Weight (kDa)

9.21

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 44 3.4e-09 F-box domain
F-box-like PF12937 5 - 40 7.1e-06 F-box-like
FBA_1 PF07734 53 - 271 1.7e-50 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 563
AccII CGCG 1 cut(s) 290
AciI CCGC 3 cut(s) 288, 290, 408
AclWI GGATC 4 cut(s) 70, 75, 215, 380
AcoI YGGCCR 1 cut(s) 560
AcsI RAATTY 1 cut(s) 604
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 5 cut(s) 22, 440, 558, 600, 898
AgsI TTSAA 5 cut(s) 112, 518, 598, 877, 919
AjiI CACGTC 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
AluBI AGCT 3 cut(s) 244, 248, 657
AluI AGCT 3 cut(s) 244, 248, 657
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 3 cut(s) 531, 626, 698
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 4 cut(s) 70, 75, 215, 380
AoxI GGCC 1 cut(s) 560
ApaLI GTGCAC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AspLEI GCGC 1 cut(s) 687
AspS9I GGNCC 1 cut(s) 827
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 1 cut(s) 593
AsuNHI GCTAGC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 827
BaeGI GKGCMC 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BalI TGGCCA 1 cut(s) 562
BauI CACGAG 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 151
BccI CCATC 2 cut(s) 209, 293
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 749, 783
BciVI GTATCC 2 cut(s) 410, 793
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 3 cut(s) 531, 626, 698
BfaI CTAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 563
BfuI GTATCC 2 cut(s) 410, 793
BglII AGATCT 1 cut(s) 450
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 554
Bme18I GGWCC 1 cut(s) 827
BmgBI CACGTC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 827
BmiI GGNNCC 2 cut(s) 14, 199
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 1 cut(s) 412
BmtI GCTAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 554
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 20, 288, 350, 552, 669
BsaWI WCCGGW 1 cut(s) 898
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 440, 558, 600, 898
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 5 cut(s) 20, 288, 350, 552, 669
BseLI CCNNNNNNNGG 5 cut(s) 22, 440, 558, 600, 898
BseMII CTCAG 2 cut(s) 261, 852
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 801
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 1 cut(s) 562
BsiEI CGRYCG 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 554, 899
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 5 cut(s) 22, 440, 558, 600, 898
BsmAI GTCTC 3 cut(s) 531, 626, 698
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 3 cut(s) 288, 290, 408
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 2 cut(s) 262, 853
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 14, 199
BspMI ACCTGC 1 cut(s) 563
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 4 cut(s) 70, 75, 215, 380
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 5 cut(s) 20, 288, 350, 552, 669
BssMI GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 350
Bst2BI CACGAG 1 cut(s) 636
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 2 cut(s) 30, 624
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 246, 295, 570
BstDEI CTNAG 3 cut(s) 77, 270, 861
BstDSI CCRYGG 4 cut(s) 20, 288, 350, 669
BstEII GGTNACC 1 cut(s) 334
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 7 cut(s) 65, 83, 223, 375, 453, 513, 763
BstMAI GTCTC 3 cut(s) 531, 626, 698
BstMBI GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
BstMCI CGRYCG 1 cut(s) 763
BstMWI GCNNNNNNNGC 3 cut(s) 287, 530, 866
BstNSI RCATGY 1 cut(s) 716
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 552
BstSLI GKGCMC 1 cut(s) 151
BstUI CGCG 1 cut(s) 290
BstX2I RGATCY 3 cut(s) 62, 80, 450
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 3 cut(s) 62, 80, 450
BsuI GTATCC 2 cut(s) 410, 793
BsuRI GGCC 1 cut(s) 562
BtgI CCRYGG 4 cut(s) 20, 288, 350, 669
BtgZI GCGATG 1 cut(s) 312
BtrI CACGTC 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 94, 744
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 3 cut(s) 246, 295, 570
CfoI GCGC 1 cut(s) 687
Cfr13I GGNCC 1 cut(s) 827
Cfr42I CCGCGG 1 cut(s) 291
CseI GACGC 1 cut(s) 513
CviAII CATG 3 cut(s) 351, 682, 713
DdeI CTNAG 3 cut(s) 77, 270, 861
DpnI GATC 7 cut(s) 64, 82, 222, 374, 452, 512, 762
DpnII GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
EaeI YGGCCR 1 cut(s) 560
Eam1104I CTCTTC 2 cut(s) 30, 624
EarI CTCTTC 2 cut(s) 30, 624
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 827
Eco91I GGTNACC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 3 cut(s) 354, 685, 716
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 350, 681, 712
FauNDI CATATG 1 cut(s) 883
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 686
GluI GCNGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 562
HapII CCGG 2 cut(s) 554, 899
HgaI GACGC 1 cut(s) 513
HhaI GCGC 1 cut(s) 687
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 354, 685, 716
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 655
HinfI GANTC 5 cut(s) 176, 325, 346, 548, 634
HpaII CCGG 2 cut(s) 554, 899
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 92, 149, 431
Hpy188I TCNGA 2 cut(s) 225, 653
Hpy188III TCNNGA 4 cut(s) 130, 209, 314, 638
Hpy8I GTNNAC 3 cut(s) 92, 149, 431
HpyAV CCTTC 3 cut(s) 26, 707, 859
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 149, 770, 818
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 530, 866
HpyF3I CTNAG 3 cut(s) 77, 270, 861
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 354, 685, 716
HspAI GCGC 1 cut(s) 685
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 314, 334
MalI GATC 7 cut(s) 64, 82, 222, 374, 452, 512, 762
MboI GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
MboII GAAGA 3 cut(s) 47, 238, 641
MflI RGATCY 3 cut(s) 62, 80, 450
MhlI GDGCHC 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 3 cut(s) 158, 604, 661
MluNI TGGCCA 1 cut(s) 562
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 5 cut(s) 25, 226, 259, 572, 752
Mox20I TGGCCA 1 cut(s) 562
MscI TGGCCA 1 cut(s) 562
MseI TTAA 7 cut(s) 356, 465, 537, 660, 753, 776, 894
Msp20I TGGCCA 1 cut(s) 562
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 554, 899
MspR9I CCNGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 287, 530, 866
NciI CCSGG 1 cut(s) 554
NcoI CCATGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 883
NdeII GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 3 cut(s) 354, 685, 716
NlaIV GGNNCC 2 cut(s) 14, 199
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 716
PfeI GAWTC 4 cut(s) 176, 325, 346, 548
PkrI GCNGC 1 cut(s) 292
Ple19I CGATCG 1 cut(s) 763
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
PspEI GGTNACC 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 14, 199
PspPI GGNCC 1 cut(s) 827
PsuI RGATCY 3 cut(s) 62, 80, 450
PvuI CGATCG 1 cut(s) 763
SacII CCGCGG 1 cut(s) 291
SaqAI TTAA 7 cut(s) 356, 465, 537, 660, 753, 776, 894
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 7 cut(s) 62, 80, 220, 372, 450, 510, 760
Sau96I GGNCC 1 cut(s) 827
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 1 cut(s) 412
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 3 cut(s) 158, 604, 661
SsiI CCGC 3 cut(s) 288, 290, 408
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 748
TaiI ACGT 1 cut(s) 154
TaqI TCGA 4 cut(s) 191, 375, 495, 577
TaqII GACCGA 1 cut(s) 194
TasI AATT 3 cut(s) 158, 604, 661
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 4 cut(s) 176, 325, 346, 548
Tru1I TTAA 7 cut(s) 356, 465, 537, 660, 753, 776, 894
Tru9I TTAA 7 cut(s) 356, 465, 537, 660, 753, 776, 894
TscAI CASTG 2 cut(s) 101, 751
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 5 cut(s) 115, 151, 248, 532, 642
TspGWI ACGGA 5 cut(s) 9, 73, 389, 686, 840
TspRI CASTG 2 cut(s) 101, 751
VneI GTGCAC 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 827
XapI RAATTY 1 cut(s) 604
XceI RCATGY 1 cut(s) 716
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.