AT3G17560
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6006762 .. 6008003
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17560.1

Sequence Viewer

Length: 1242 bp
ATGAGGTCAGAAATCACAAGAGAAACAAAGTTGCTCTTCGATCTTCCACAGGATGTGATAGAAGAGATATTCTCTAAGGTTCCGGTGACATGTCTAAGAAGAATACGATCTACTTGCAAAAGATTGTACGCTTTACTCAAAGATCGTGGATTCATCAGAAAACATTTTGCTAAATCAGCAAGGCAGTACCATGCTCTTATGCTAAAGAATTTTAGGTTTTATTCAGTGAGCTTCAATCCTAATGGAACTGAGATGGACGTGGCTTCCTTGTTTAATGGTGAACGTAGCCTAATCGACCCCTATAGTAGTTCAGAAGCTATTATATCTCAAGCCTTTCACTGTGATGGTTTATTGCTATGCACCACCAAGGAAAACCGATTAGTGGTTTTGAACCCGTTTTCAGGGCAAACCAAATGGTTGCAACCACAAAATCGTTGTAAGATAGATGAGGCCTATGTTCTTGGATACGACAACAGTGACTTGTGCCATAGCTACAAAATCTTGAGTTTTCCGGATCTATACGAACAAGAATTGGAAACTATCAAGAATGCAGGGAGGGATCTTGATGTCACTCCCGAAGGCGACTTAGAATTGAAAACCGATGATTTTAGCTCTAATTCATGGAGGAGAAATCTTGGTGTCACTCCCCACGGCGGCTTAGGATTGAAAATATATGATTTTAGCTCTAATTCATGGAAGAAACTTGATGTCATCACTCCCGAAGGTTGCTTAAAATCTTATGGTGTGTCACTGAAGGGAAATGCTTATTGGGTGTACATGTCTAAACGAAGAGGAGTCAACGACTACTCTCTACTTAGTTTTGATTTTTCAACAGAGAGTTTTCAACATTTGTGTGTTCCCTTTCATCAGGAAGCAGATTGTTTTGGTACTATGGCTCTCTCAGTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTTGCGAGACTCTAAAGGTGGAAATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAAAAAGTTCTTAACAGTGGATTTAGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCGCATGAGTTTCTTCATCGACGAGGAGAAGAAAGTTGCCGTGTGTTGTGACAGAGATAACAAGGTACACGTTGTTGGAGAAGATGAATACAGAGTATCTTCTGGTTTTTATTTTCTAGATTTTGAAGGCATAACATGTTGCCTGACTGTCTTTGGTTATGTTCCAAGATTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006355 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016236 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0019867 GO:0022607 GO:0022613 GO:0022618 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032502 GO:0032543 GO:0034248 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0061668 GO:0061919 GO:0065003 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903108 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04130 ko04310 map04130 map04310
Pfam Domains
Protein Families
mTERF

Protein Analysis

413

Amino Acids

47.67

Weight (kDa)

6.04

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 53 3.2e-08 F-box domain
F-box-like PF12937 13 - 51 7e-06 F-box-like
FBA_1 PF07734 65 - 217 1.9e-31 F-box associated beta propeller domain
FBA_1 PF07734 222 - 413 1.7e-53 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 511
AciI CCGC 1 cut(s) 654
AclWI GGATC 2 cut(s) 522, 567
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 5 cut(s) 128, 188, 776, 889, 1131
AfiI CCNNNNNNNGG 3 cut(s) 382, 401, 653
AflIII ACRYGT 4 cut(s) 89, 777, 1132, 1199
AgsI TTSAA 7 cut(s) 235, 391, 595, 667, 831, 845, 1190
AjiI CACGTC 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 751, 783
AluBI AGCT 5 cut(s) 231, 317, 492, 612, 684
AluI AGCT 5 cut(s) 231, 317, 492, 612, 684
Alw26I GTCTC 1 cut(s) 941
AlwI GGATC 2 cut(s) 522, 567
Aor13HI TCCGGA 1 cut(s) 511
AoxI GGCC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 1010
AsuHPI GGTGA 2 cut(s) 97, 290
BccI CCATC 2 cut(s) 247, 338
BceAI ACGGC 2 cut(s) 667, 1088
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciVI GTATCC 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 941
BfaI CTAG 1 cut(s) 1181
BfmI CTRYAG 1 cut(s) 301
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 1 cut(s) 655
BlsI GCNGC 1 cut(s) 656
BmgBI CACGTC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu10I CCTNAGC 1 cut(s) 658
BpuEI CTTGAG 2 cut(s) 312, 523
BsaJI CCNNGG 2 cut(s) 366, 649
BsaWI WCCGGW 2 cut(s) 82, 511
BsaXI ACNNNNNCTCC 2 cut(s) 1032, 1062
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 401, 653
BseAI TCCGGA 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 366, 649
BseGI GGATG 2 cut(s) 58, 975
BseLI CCNNNNNNNGG 3 cut(s) 382, 401, 653
BseMII CTCAG 2 cut(s) 240, 915
BseRI GAGGAG 3 cut(s) 640, 807, 1103
BshFI GGCC 1 cut(s) 452
BsiSI CCGG 2 cut(s) 83, 512
BslI CCNNNNNNNGG 3 cut(s) 382, 401, 653
BsmAI GTCTC 1 cut(s) 941
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 1 cut(s) 452
Bsp13I TCCGGA 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 5 cut(s) 40, 107, 142, 514, 559
BspACI CCGC 1 cut(s) 654
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 2 cut(s) 241, 914
BspEI TCCGGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 2 cut(s) 522, 567
BspQI GCTCTTC 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 774
BssECI CCNNGG 2 cut(s) 366, 649
BssMI GATC 5 cut(s) 40, 107, 142, 514, 559
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 4 cut(s) 341, 476, 1021, 1213
Bst6I CTCTTC 3 cut(s) 41, 57, 784
BstAUI TGTACA 1 cut(s) 774
BstDEI CTNAG 7 cut(s) 75, 95, 249, 586, 658, 815, 901
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 2 cut(s) 58, 975
BstKTI GATC 5 cut(s) 43, 110, 145, 517, 562
BstMAI GTCTC 1 cut(s) 941
BstMBI GATC 5 cut(s) 40, 107, 142, 514, 559
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 3 cut(s) 93, 781, 1203
BstSFI CTRYAG 1 cut(s) 301
BstX2I RGATCY 2 cut(s) 514, 559
BstYI RGATCY 2 cut(s) 514, 559
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 649
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 58, 975
BtsIMutI CAGTG 5 cut(s) 231, 337, 481, 749, 1026
Csp6I GTAC 5 cut(s) 127, 187, 775, 888, 1130
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 8 cut(s) 90, 191, 621, 693, 778, 1002, 1069, 1200
CviQI GTAC 5 cut(s) 127, 187, 775, 888, 1130
DdeI CTNAG 7 cut(s) 75, 95, 249, 586, 658, 815, 901
DpnI GATC 5 cut(s) 42, 109, 144, 516, 561
DpnII GATC 5 cut(s) 40, 107, 142, 514, 559
Eam1104I CTCTTC 3 cut(s) 41, 57, 784
EarI CTCTTC 3 cut(s) 41, 57, 784
Eco130I CCWWGG 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 773
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 8 cut(s) 93, 194, 624, 696, 781, 1005, 1072, 1203
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 906, 938
FatI CATG 8 cut(s) 89, 190, 620, 692, 777, 1001, 1068, 1199
Fnu4HI GCNGC 1 cut(s) 655
FokI GGATG 2 cut(s) 65, 982
Fsp4HI GCNGC 1 cut(s) 655
FspBI CTAG 1 cut(s) 1181
GluI GCNGC 1 cut(s) 655
HaeIII GGCC 1 cut(s) 452
HapII CCGG 2 cut(s) 83, 512
Hin1II CATG 8 cut(s) 93, 194, 624, 696, 781, 1005, 1072, 1203
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 3 cut(s) 150, 795, 949
HpaII CCGG 2 cut(s) 83, 512
HphI GGTGA 2 cut(s) 97, 290
Hpy166II GTNNAC 4 cut(s) 281, 775, 799, 1132
Hpy188I TCNGA 4 cut(s) 10, 158, 313, 939
Hpy188III TCNNGA 8 cut(s) 502, 512, 544, 563, 575, 719, 869, 1181
Hpy8I GTNNAC 4 cut(s) 281, 775, 799, 1132
Hpy99I CGWCG 1 cut(s) 1088
HpyAV CCTTC 4 cut(s) 572, 716, 748, 1184
HpyCH4III ACNGT 4 cut(s) 341, 476, 1021, 1213
HpyCH4IV ACGT 3 cut(s) 258, 283, 1134
HpyCH4V TGCA 4 cut(s) 117, 360, 421, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 7 cut(s) 75, 95, 249, 586, 658, 815, 901
HpySE526I ACGT 3 cut(s) 258, 283, 1134
Hsp92II CATG 8 cut(s) 93, 194, 624, 696, 781, 1005, 1072, 1203
Kpn2I TCCGGA 1 cut(s) 511
Kzo9I GATC 5 cut(s) 40, 107, 142, 514, 559
LguI GCTCTTC 1 cut(s) 41
LpnPI CCDG 8 cut(s) 35, 96, 387, 525, 537, 854, 1152, 1220
MaeI CTAG 1 cut(s) 1181
MaeII ACGT 3 cut(s) 258, 283, 1134
MaeIII GTNAC 6 cut(s) 85, 476, 568, 640, 747, 1112
MalI GATC 5 cut(s) 42, 109, 144, 516, 561
MboI GATC 5 cut(s) 40, 107, 142, 514, 559
MflI RGATCY 2 cut(s) 514, 559
MluCI AATT 5 cut(s) 208, 530, 590, 616, 688
MlyI GAGTC 2 cut(s) 804, 943
MmeI TCCRAC 1 cut(s) 1120
MnlI CCTC 7 cut(s) 442, 549, 618, 785, 1044, 1053, 1081
MroI TCCGGA 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 1010
MseI TTAA 3 cut(s) 273, 731, 1016
MslI CAYNNNNRTG 2 cut(s) 342, 852
MspI CCGG 2 cut(s) 83, 512
Mva1269I GAATGC 1 cut(s) 553
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 5 cut(s) 40, 107, 142, 514, 559
NlaIII CATG 8 cut(s) 93, 194, 624, 696, 781, 1005, 1072, 1203
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 6 cut(s) 85, 476, 568, 640, 747, 1112
NspI RCATGY 3 cut(s) 93, 781, 1203
PceI AGGCCT 1 cut(s) 452
PciI ACATGT 3 cut(s) 89, 777, 1199
PciSI GCTCTTC 1 cut(s) 41
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 656
PleI GAGTC 2 cut(s) 803, 943
PpsI GAGTC 2 cut(s) 803, 943
PscI ACATGT 3 cut(s) 89, 777, 1199
PspN4I GGNNCC 1 cut(s) 81
PsrI GAACNNNNNNTAC 2 cut(s) 1023, 1055
PsuI RGATCY 2 cut(s) 514, 559
RsaI GTAC 5 cut(s) 128, 188, 776, 889, 1131
RsaNI GTAC 5 cut(s) 127, 187, 775, 888, 1130
RseI CAYNNNNRTG 2 cut(s) 342, 852
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 273, 731, 1016
SatI GCNGC 1 cut(s) 655
Sau3AI GATC 5 cut(s) 40, 107, 142, 514, 559
SchI GAGTC 2 cut(s) 804, 943
SfcI CTRYAG 1 cut(s) 301
SmiMI CAYNNNNRTG 2 cut(s) 342, 852
SmlI CTYRAG 2 cut(s) 327, 502
SmoI CTYRAG 2 cut(s) 327, 502
Sse9I AATT 5 cut(s) 208, 530, 590, 616, 688
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 1 cut(s) 654
SspMI CTAG 1 cut(s) 1181
StuI AGGCCT 1 cut(s) 452
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 4 cut(s) 341, 476, 1021, 1213
TaiI ACGT 3 cut(s) 261, 286, 1137
TaqI TCGA 3 cut(s) 39, 294, 1083
TasI AATT 5 cut(s) 208, 530, 590, 616, 688
TatI WGTACW 1 cut(s) 774
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 3 cut(s) 273, 731, 1016
Tru9I TTAA 3 cut(s) 273, 731, 1016
TscAI CASTG 5 cut(s) 231, 344, 481, 756, 1026
TseFI GTSAC 6 cut(s) 85, 476, 568, 640, 747, 1112
Tsp45I GTSAC 6 cut(s) 85, 476, 568, 640, 747, 1112
TspDTI ATGAA 6 cut(s) 142, 609, 681, 854, 1069, 1164
TspRI CASTG 5 cut(s) 231, 344, 481, 756, 1026
XapI RAATTY 1 cut(s) 208
XbaI TCTAGA 1 cut(s) 1180
XceI RCATGY 3 cut(s) 93, 781, 1203
XmnI GAANNNNTTC 1 cut(s) 1010
XspI CTAG 1 cut(s) 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.