AT3G17480

F-box LRR-repeat kelch-repeat protein At1g11620

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
5983196 .. 5984320
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17480.1

Sequence Viewer

Length: 1125 bp
ATGATGACATTACAATCTTCTCCCATGTCCGTTCTTACCGAAGATTTGGTAGAGGATATACTCTCTAGGGTTCCAGCGACATCTCTAGTTCGATTACGATCTACTTGCAAACAGTGGAACGCAATATTAAATGATCGTAGATTCATCAAGAAGCACTTTGATACAGCAGAAAAGGAGTATTTGGATATGTTGTTAAGGAGTCTTAGGGTTTCTTCGATGAGTGTCAATCTCCATGGACTTCATGACAACATTGATCCTTCTATAGAGCTAAAGCGTGAACTTAACCTAAAAGGTCTCCTTTGTAATTCAGGTAAAGTCGAGAGTTTTGAAGTCTTTCACTGTAACGGGTTATTGCTATTCACCAACACTAGCACTATCGTGGTTTGGAACCCTTGTACGGGTCAAACCAAGTGGATCCAAACTGAAAGTGCTAACACTAGATACCATAAGTATGCTCTCGGATACGAAAACAAAAATTTGTGCCGTGATTACAAAATCCTAAGGTTCTTGGATGATGGAACTAATTTTGAGTTGGAAATCTACGAGTTTAATTCGAGTTCATGGAGGGTTCTTGATAGTGTCGAAATAGACTTCGAACTAGACATAGGTAGCCAAGGCATGTCAGTAAAGGGGAATACTTATTGGATCGTTATAGATGATCATGAAGTAGATGGAGAATTAGTCAATTGTTTCTTAACAAGTTTTGATTTTACAAGAGAAAGATTTGGGCCACATGTGTGCCTTCCGTTTCAAACTAGTTGGTATAGCGATGTGATCTCACTATCTTCTGTAAGAGAAGAGCGGCTTTCAGTCTTGTTTCATGAAGAAGATTCTTTAACGATGGAGATATGGGTGACAAATGATATCACTGACACCATTGTCACGTCTTGGAGCAAATTTTTAAGAGTTGACTTATACACTCATCGGTTTTATAATGGTGTAACTTTTTTCATTGACGAGGAGAATAAAGCCGCCGTGTTTAGTGAGGATGTACCCGATGATAGTGATGACATACACAGCATTGTATACATTATTGGACAAGATAGATTGAGAATTGTGGATCTTGAAGATGGACCATTTTGGCCACAAATGTTCTGTTATGTTCCAAGTTTAGTTCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

374

Amino Acids

43.44

Weight (kDa)

4.74

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 50 1.5e-08 F-box domain
F-box-like PF12937 15 - 51 1.9e-06 F-box-like
FBA_1 PF07734 63 - 374 1.3e-95 F-box associated beta propeller domain
FBA_3 PF08268 110 - 299 9.6e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 933
AasI GACNNNNNNGTC 1 cut(s) 878
AccBSI CCGCTC 1 cut(s) 802
AccI GTMKAC 1 cut(s) 1026
AciI CCGC 2 cut(s) 802, 972
AclWI GGATC 5 cut(s) 248, 409, 422, 653, 1068
AcoI YGGCCR 1 cut(s) 1082
AcsI RAATTY 2 cut(s) 475, 896
AfaI GTAC 2 cut(s) 397, 993
AfiI CCNNNNNNNGG 2 cut(s) 397, 398
AflIII ACRYGT 1 cut(s) 733
AgsI TTSAA 4 cut(s) 329, 752, 1067, 1118
AhlI ACTAGT 1 cut(s) 755
AjiI CACGTC 1 cut(s) 885
AleI CACNNNNGTG 2 cut(s) 377, 736
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 5 cut(s) 248, 409, 422, 653, 1068
AoxI GGCC 2 cut(s) 728, 1082
ApoI RAATTY 2 cut(s) 475, 896
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 728, 1073
AsuHPI GGTGA 2 cut(s) 352, 865
AsuII TTCGAA 1 cut(s) 594
AvaII GGWCC 1 cut(s) 1073
AxyI CCTNAGG 1 cut(s) 500
BalI TGGCCA 1 cut(s) 1084
BamHI GGATCC 1 cut(s) 414
BccI CCATC 4 cut(s) 509, 665, 835, 1064
BceAI ACGGC 2 cut(s) 468, 959
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciVI GTATCC 1 cut(s) 455
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 7 cut(s) 66, 86, 369, 438, 599, 756, 1123
BfmI CTRYAG 1 cut(s) 261
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 2 cut(s) 803, 972
BlsI GCNGC 2 cut(s) 804, 973
Bme18I GGWCC 1 cut(s) 1073
BmgBI CACGTC 1 cut(s) 885
BmgT120I GGNCC 2 cut(s) 728, 1073
BmiI GGNNCC 3 cut(s) 72, 389, 416
Bpu14I TTCGAA 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 232, 613
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 398
Bse21I CCTNAGG 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 232, 613
BseGI GGATG 2 cut(s) 517, 994
BseJI GATNNNNATC 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 397, 398
BseRI GAGGAG 1 cut(s) 974
BshFI GGCC 2 cut(s) 730, 1084
BslI CCNNNNNNNGG 2 cut(s) 397, 398
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 2 cut(s) 730, 1084
Bso31I GGTCTC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 594
Bsp143I GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 802, 972
BspANI GGCC 2 cut(s) 730, 1084
BspHI TCATGA 3 cut(s) 241, 661, 820
BspLI GGNNCC 3 cut(s) 72, 389, 416
BspPI GGATC 5 cut(s) 248, 409, 422, 653, 1068
BspQI GCTCTTC 1 cut(s) 792
BspT104I TTCGAA 1 cut(s) 594
BspTNI GGTCTC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 802
BssECI CCNNGG 2 cut(s) 232, 613
BssMI GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
BssNAI GTATAC 1 cut(s) 1027
BssT1I CCWWGG 2 cut(s) 232, 613
Bst1107I GTATAC 1 cut(s) 1027
Bst4CI ACNGT 2 cut(s) 114, 341
Bst6I CTCTTC 1 cut(s) 792
BstBI TTCGAA 1 cut(s) 594
BstDEI CTNAG 2 cut(s) 203, 500
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 517, 994
BstKTI GATC 8 cut(s) 101, 136, 256, 417, 648, 661, 777, 1063
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
BstNSI RCATGY 2 cut(s) 622, 737
BstSFI CTRYAG 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 414, 1060
BstYI RGATCY 2 cut(s) 414, 1060
BstZ17I GTATAC 1 cut(s) 1027
Bsu36I CCTNAGG 1 cut(s) 500
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 2 cut(s) 730, 1084
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 783
BtrI CACGTC 1 cut(s) 885
BtsCI GGATG 2 cut(s) 517, 994
BtsIMutI CAGTG 3 cut(s) 119, 337, 867
CciI TCATGA 3 cut(s) 241, 661, 820
Cfr13I GGNCC 2 cut(s) 728, 1073
Csp6I GTAC 2 cut(s) 396, 992
CspCI CAANNNNNGTGG 2 cut(s) 392, 427
CviAII CATG 8 cut(s) 25, 233, 242, 561, 619, 662, 734, 821
CviJI RGCY 6 cut(s) 268, 612, 730, 805, 971, 1084
CviKI_1 RGCY 6 cut(s) 268, 612, 730, 805, 971, 1084
CviQI GTAC 2 cut(s) 396, 992
DdeI CTNAG 2 cut(s) 203, 500
DpnI GATC 8 cut(s) 100, 135, 255, 416, 647, 660, 776, 1062
DpnII GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
DrdI GACNNNNNNGTC 1 cut(s) 878
DseDI GACNNNNNNGTC 1 cut(s) 878
EaeI YGGCCR 1 cut(s) 1082
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco130I CCWWGG 2 cut(s) 232, 613
Eco31I GGTCTC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 1 cut(s) 1073
Eco81I CCTNAGG 1 cut(s) 500
EcoRV GATATC 1 cut(s) 865
EcoT14I CCWWGG 2 cut(s) 232, 613
ErhI CCWWGG 2 cut(s) 232, 613
FaeI CATG 8 cut(s) 28, 236, 245, 564, 622, 665, 737, 824
FalI AAGNNNNNCTT 6 cut(s) 140, 172, 282, 314, 789, 821
FatI CATG 8 cut(s) 24, 232, 241, 560, 618, 661, 733, 820
FbaI TGATCA 1 cut(s) 658
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 2 cut(s) 803, 972
FokI GGATG 2 cut(s) 524, 1001
Fsp4HI GCNGC 2 cut(s) 803, 972
FspBI CTAG 7 cut(s) 66, 86, 369, 438, 599, 756, 1123
GluI GCNGC 2 cut(s) 803, 972
HaeIII GGCC 2 cut(s) 730, 1084
Hin1II CATG 8 cut(s) 28, 236, 245, 564, 622, 665, 737, 824
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HinfI GANTC 3 cut(s) 141, 199, 830
HphI GGTGA 2 cut(s) 352, 865
Hpy166II GTNNAC 3 cut(s) 278, 910, 1027
Hpy188I TCNGA 1 cut(s) 461
Hpy188III TCNNGA 7 cut(s) 148, 242, 319, 572, 662, 821, 1064
Hpy8I GTNNAC 3 cut(s) 278, 910, 1027
HpyAV CCTTC 2 cut(s) 267, 752
HpyCH4III ACNGT 2 cut(s) 114, 341
HpyCH4IV ACGT 1 cut(s) 884
HpyCH4V TGCA 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 203, 500
HpySE526I ACGT 1 cut(s) 884
Hsp92II CATG 8 cut(s) 28, 236, 245, 564, 622, 665, 737, 824
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 1 cut(s) 891
LpnPI CCDG 2 cut(s) 87, 294
MaeI CTAG 7 cut(s) 66, 86, 369, 438, 599, 756, 1123
MaeII ACGT 1 cut(s) 884
MaeIII GTNAC 4 cut(s) 341, 853, 880, 940
MalI GATC 8 cut(s) 100, 135, 255, 416, 647, 660, 776, 1062
MbiI CCGCTC 1 cut(s) 802
MboI GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
MboII GAAGA 8 cut(s) 9, 53, 204, 777, 809, 836, 839, 1079
MfeI CAATTG 1 cut(s) 685
MflI RGATCY 2 cut(s) 414, 1060
MlsI TGGCCA 1 cut(s) 1084
MluCI AATT 8 cut(s) 304, 475, 523, 550, 677, 685, 896, 1053
MluNI TGGCCA 1 cut(s) 1084
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 4 cut(s) 46, 558, 952, 979
Mox20I TGGCCA 1 cut(s) 1084
MroXI GAANNNNTTC 1 cut(s) 333
MscI TGGCCA 1 cut(s) 1084
MseI TTAA 7 cut(s) 128, 194, 282, 549, 695, 836, 902
MslI CAYNNNNRTG 3 cut(s) 377, 450, 736
Msp20I TGGCCA 1 cut(s) 1084
MunI CAATTG 1 cut(s) 685
NcoI CCATGG 1 cut(s) 232
NdeII GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
NlaIII CATG 8 cut(s) 28, 236, 245, 564, 622, 665, 737, 824
NlaIV GGNNCC 3 cut(s) 72, 389, 416
NmuCI GTSAC 2 cut(s) 853, 880
NspI RCATGY 2 cut(s) 622, 737
NspV TTCGAA 1 cut(s) 594
OliI CACNNNNGTG 2 cut(s) 377, 736
PagI TCATGA 3 cut(s) 241, 661, 820
PciI ACATGT 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 792
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 141, 830
PkrI GCNGC 2 cut(s) 804, 973
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PscI ACATGT 1 cut(s) 733
PsiI TTATAA 1 cut(s) 933
PspN4I GGNNCC 3 cut(s) 72, 389, 416
PspPI GGNCC 2 cut(s) 728, 1073
PsuI RGATCY 2 cut(s) 414, 1060
RsaI GTAC 2 cut(s) 397, 993
RsaNI GTAC 2 cut(s) 396, 992
RseI CAYNNNNRTG 3 cut(s) 377, 450, 736
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 7 cut(s) 128, 194, 282, 549, 695, 836, 902
SatI GCNGC 2 cut(s) 803, 972
Sau3AI GATC 8 cut(s) 98, 133, 253, 414, 645, 658, 774, 1060
Sau96I GGNCC 2 cut(s) 728, 1073
SchI GAGTC 1 cut(s) 208
SetI ASST 7 cut(s) 270, 288, 295, 313, 506, 610, 887
SfcI CTRYAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 594
SinI GGWCC 1 cut(s) 1073
SmiMI CAYNNNNRTG 3 cut(s) 377, 450, 736
SpeI ACTAGT 1 cut(s) 755
Sse9I AATT 8 cut(s) 304, 475, 523, 550, 677, 685, 896, 1053
SsiI CCGC 2 cut(s) 802, 972
SspI AATATT 1 cut(s) 126
SspMI CTAG 7 cut(s) 66, 86, 369, 438, 599, 756, 1123
StyI CCWWGG 2 cut(s) 232, 613
TaaI ACNGT 2 cut(s) 114, 341
TaiI ACGT 1 cut(s) 887
TaqI TCGA 6 cut(s) 91, 215, 318, 554, 582, 594
TasI AATT 8 cut(s) 304, 475, 523, 550, 677, 685, 896, 1053
TauI GCSGC 2 cut(s) 805, 974
TfiI GAWTC 2 cut(s) 141, 830
Tru1I TTAA 7 cut(s) 128, 194, 282, 549, 695, 836, 902
Tru9I TTAA 7 cut(s) 128, 194, 282, 549, 695, 836, 902
TscAI CASTG 3 cut(s) 119, 344, 874
TseFI GTSAC 2 cut(s) 853, 880
Tsp45I GTSAC 2 cut(s) 853, 880
TspDTI ATGAA 7 cut(s) 133, 230, 549, 678, 809, 837, 940
TspGWI ACGGA 2 cut(s) 19, 735
TspRI CASTG 3 cut(s) 119, 344, 874
VpaK11BI GGWCC 1 cut(s) 1073
XapI RAATTY 2 cut(s) 475, 896
XceI RCATGY 2 cut(s) 622, 737
XmiI GTMKAC 1 cut(s) 1026
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 7 cut(s) 66, 86, 369, 438, 599, 756, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.