AT5G41500

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Forward (+)
16604002 .. 16605213
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41500.1

Sequence Viewer

Length: 1212 bp
ATGGCGACAACGATCTCTAATCTTCCGAGGGAGTTGATAGAGGAGATTCTTTCTAGGGTTCCCTTGAGAGCCATGAAAGCAATGAGATTAACTTGCAAAAGTTGGAACAATTTATCTAAAAGTGAGAGTTTTATGAAGATGCACATTGGTAAAGCTGCAACAAGAGAAGAGAAGACCATGATGGTTGCGGTGATGCCTCACACTCTTGCTTTAGTGAGCGTTGTCGTCGACGGCGTTAATCCATCTACAGAGCTTAAAGGTCAGTTTAGTTTCCTTGACAAGGAATTCTTTATATATCGAGTCATCCACTATGAGGGTTTGCTGTTATGTATTTTGAAAGACGCTACTAGGATTGTGGTTTGGAATCCGTATTTGGGGCAAGAAAGGTGGATCCAAATCAGATATTCTCACCGTCCACATGGTGTAGACCATTTCAAATATGCTGTTGGATACGCCGACAAGGTATCTTGTCGTAGCGTTAAATTACTGAGGTTTTTAGATTATTTCCACAAAGCATCCGATAAACCATTTTTTTGGTATGAAATCTACGATTTTGACTCTTGTTTATGGACAACTCTTGATATCACTCCACATTGGGGTATATCTTGGACTTACCCTAGAGTTTCCCTTAAGGGAAACACTTACTGGCCTGCTAGAGAAATGAACACAAAAGGTTTCCAAGATCACATAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTACCTCTACCTAGGGCTCAAGGATGTCATGTGAGTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGTTTTACTTAAGCACCGGCTGCACCACGATTCATACGAATATGAGTTTGAGATATGGATTACGACTAAGATTGACGTCGAAATGGTGTCGTGGAGCAAGTTCTTGAGAATGGATATGAGACCTAAGATAAAGCTTCCACTTAGTTTCTACGTTGACGAAGAGAAGAAAGTTTTCATGGGTTTTGATCATGGGGAATATCCCAAGTTATTTCTTAACATCATTGGAGAGACTGGATTCTTAAGAAAATTGGATCTCGGAGTACATGAAGGCCACCGTTCGCCATGCTCTTATGTTCCAAGTTTGGTCCAAATCAAGCATCCTGCAGGAGACAAAATGATAAAACAAAGTAGTTTAGAAGACCGTCGATTTGCTCAAAACAGTTTGAGACTTGCTGCAATTGAAAAGCTCATCAATTAG

Protein Analysis

403

Amino Acids

47.13

Weight (kDa)

8.98

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 45 1.8e-09 F-box domain
F-box-like PF12937 5 - 44 5.8e-06 F-box-like
FBA_1 PF07734 61 - 369 4.7e-95 F-box associated beta propeller domain
FBA_3 PF08268 98 - 298 5.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 873
AccI GTMKAC 2 cut(s) 228, 426
AciI CCGC 2 cut(s) 188, 725
AclWI GGATC 3 cut(s) 385, 398, 1053
AcsI RAATTY 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 870
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 1056
AfiI CCNNNNNNNGG 4 cut(s) 280, 313, 374, 596
AflII CTTAAG 3 cut(s) 629, 803, 1033
AgsI TTSAA 3 cut(s) 337, 436, 1196
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 5 cut(s) 155, 253, 790, 928, 1201
AluI AGCT 5 cut(s) 155, 253, 790, 928, 1201
Alw26I GTCTC 4 cut(s) 907, 1016, 1116, 1174
AlwI GGATC 3 cut(s) 385, 398, 1053
AoxI GGCC 2 cut(s) 647, 1063
ApeKI GCWGC 3 cut(s) 155, 814, 1187
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 1145, 1177
Asp700I GAANNNNTTC 1 cut(s) 965
AspA2I CCTAGG 1 cut(s) 740
AspS9I GGNCC 2 cut(s) 722, 1099
AsuHPI GGTGA 2 cut(s) 202, 401
AvaII GGWCC 2 cut(s) 722, 1099
AvrII CCTAGG 1 cut(s) 740
BamHI GGATCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 748
BbsI GAAGAC 2 cut(s) 179, 1158
BbvI GCAGC 3 cut(s) 142, 801, 1174
BccI CCATC 2 cut(s) 175, 250
BceAI ACGGC 1 cut(s) 247
BciVI GTATCC 1 cut(s) 443
BclI TGATCA 1 cut(s) 979
BcoDI GTCTC 4 cut(s) 907, 1016, 1116, 1174
BfaI CTAG 5 cut(s) 54, 348, 618, 654, 741
BfmI CTRYAG 2 cut(s) 246, 1116
BfrI CTTAAG 3 cut(s) 629, 803, 1033
BfuI GTATCC 1 cut(s) 443
BisI GCNGC 3 cut(s) 156, 815, 1188
BlnI CCTAGG 1 cut(s) 740
BlsI GCNGC 3 cut(s) 157, 816, 1189
Bme18I GGWCC 2 cut(s) 722, 1099
BmgT120I GGNCC 2 cut(s) 722, 1099
BmiI GGNNCC 2 cut(s) 60, 392
BmsI GCATC 4 cut(s) 129, 183, 524, 1120
BpiI GAAGAC 2 cut(s) 179, 1158
BpuEI CTTGAG 3 cut(s) 85, 732, 919
BsaBI GATNNNNATC 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 870
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 2 cut(s) 26, 740
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 313, 374, 596
Bse118I RCCGGY 1 cut(s) 810
Bse1I ACTGG 2 cut(s) 650, 1030
Bse3DI GCAATG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 26, 740
BseGI GGATG 4 cut(s) 303, 515, 758, 1111
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 4 cut(s) 280, 313, 374, 596
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 2 cut(s) 650, 1030
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 142, 801, 1174
BsgI GTGCAG 1 cut(s) 800
BshFI GGCC 2 cut(s) 649, 1065
BsiSI CCGG 1 cut(s) 811
BslI CCNNNNNNNGG 4 cut(s) 280, 313, 374, 596
BsmAI GTCTC 4 cut(s) 907, 1016, 1116, 1174
BsnI GGCC 2 cut(s) 649, 1065
Bso31I GGTCTC 1 cut(s) 907
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 5 cut(s) 12, 390, 682, 979, 1045
BspACI CCGC 2 cut(s) 188, 725
BspANI GGCC 2 cut(s) 649, 1065
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 60, 392
BspMAI CTGCAG 1 cut(s) 1120
BspPI GGATC 3 cut(s) 385, 398, 1053
BspTI CTTAAG 3 cut(s) 629, 803, 1033
BspTNI GGTCTC 1 cut(s) 907
BsrDI GCAATG 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 810
BsrI ACTGG 2 cut(s) 650, 1030
BssAI RCCGGY 1 cut(s) 810
BssECI CCNNGG 2 cut(s) 26, 740
BssMI GATC 5 cut(s) 12, 390, 682, 979, 1045
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 740
Bst4CI ACNGT 4 cut(s) 413, 1070, 1157, 1175
Bst6I CTCTTC 3 cut(s) 162, 777, 948
BstACI GRCGYC 1 cut(s) 870
BstAFI CTTAAG 3 cut(s) 629, 803, 1033
BstAPI GCANNNNNTGC 1 cut(s) 814
BstC8I GCNNGC 2 cut(s) 651, 792
BstDEI CTNAG 4 cut(s) 488, 861, 918, 935
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 4 cut(s) 303, 515, 758, 1111
BstKTI GATC 5 cut(s) 15, 393, 685, 982, 1048
BstMAI GTCTC 4 cut(s) 907, 1016, 1116, 1174
BstMBI GATC 5 cut(s) 12, 390, 682, 979, 1045
BstMWI GCNNNNNNNGC 2 cut(s) 77, 814
BstSFI CTRYAG 2 cut(s) 246, 1116
BstV1I GCAGC 3 cut(s) 142, 801, 1174
BstV2I GAAGAC 2 cut(s) 179, 1158
BstX2I RGATCY 2 cut(s) 390, 1045
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 2 cut(s) 390, 1045
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 2 cut(s) 649, 1065
BtsCI GGATG 4 cut(s) 303, 515, 758, 1111
Cac8I GCNNGC 2 cut(s) 651, 792
Cfr10I RCCGGY 1 cut(s) 810
Cfr13I GGNCC 2 cut(s) 722, 1099
CseI GACGC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 1055
CspCI CAANNNNNGTGG 2 cut(s) 368, 403
CviAII CATG 8 cut(s) 73, 178, 419, 758, 970, 983, 1058, 1077
CviQI GTAC 1 cut(s) 1055
DdeI CTNAG 4 cut(s) 488, 861, 918, 935
DpnI GATC 5 cut(s) 14, 392, 684, 981, 1047
DpnII GATC 5 cut(s) 12, 390, 682, 979, 1045
DraIII CACNNNGTG 1 cut(s) 422
Eam1104I CTCTTC 3 cut(s) 162, 777, 948
EarI CTCTTC 3 cut(s) 162, 777, 948
Eco130I CCWWGG 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 907
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 722, 1099
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 284
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 740
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 740
FaeI CATG 8 cut(s) 76, 181, 422, 761, 973, 986, 1061, 1080
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 774, 806
FatI CATG 8 cut(s) 72, 177, 418, 757, 969, 982, 1057, 1076
FbaI TGATCA 1 cut(s) 979
FblI GTMKAC 2 cut(s) 228, 426
Fnu4HI GCNGC 3 cut(s) 156, 815, 1188
FokI GGATG 4 cut(s) 290, 502, 765, 1098
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 3 cut(s) 156, 815, 1188
FspBI CTAG 5 cut(s) 54, 348, 618, 654, 741
GluI GCNGC 3 cut(s) 156, 815, 1188
HaeIII GGCC 2 cut(s) 649, 1065
HapII CCGG 1 cut(s) 811
HgaI GACGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 870
Hin1II CATG 8 cut(s) 76, 181, 422, 761, 973, 986, 1061, 1080
HincII GTYRAC 2 cut(s) 229, 949
HindII GTYRAC 2 cut(s) 229, 949
HindIII AAGCTT 2 cut(s) 788, 926
HinfI GANTC 6 cut(s) 46, 300, 364, 557, 824, 1029
HpaII CCGG 1 cut(s) 811
HphI GGTGA 2 cut(s) 202, 401
Hpy166II GTNNAC 4 cut(s) 229, 416, 427, 949
Hpy188I TCNGA 4 cut(s) 27, 401, 520, 1052
Hpy188III TCNNGA 2 cut(s) 578, 898
Hpy8I GTNNAC 4 cut(s) 229, 416, 427, 949
Hpy99I CGWCG 4 cut(s) 230, 233, 875, 1161
HpyAV CCTTC 1 cut(s) 1055
HpyCH4III ACNGT 4 cut(s) 413, 1070, 1157, 1175
HpyCH4IV ACGT 2 cut(s) 870, 945
HpyCH4V TGCA 7 cut(s) 96, 142, 158, 794, 817, 1118, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 814
HpyF3I CTNAG 4 cut(s) 488, 861, 918, 935
HpySE526I ACGT 2 cut(s) 870, 945
Hsp92I GRCGYC 1 cut(s) 870
Hsp92II CATG 8 cut(s) 76, 181, 422, 761, 973, 986, 1061, 1080
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 5 cut(s) 12, 390, 682, 979, 1045
LmnI GCTCC 1 cut(s) 888
LpnPI CCDG 6 cut(s) 631, 663, 824, 1011, 1104, 1128
Lsp1109I GCAGC 3 cut(s) 142, 801, 1174
LweI GCATC 4 cut(s) 129, 183, 524, 1120
MaeI CTAG 5 cut(s) 54, 348, 618, 654, 741
MaeII ACGT 2 cut(s) 870, 945
MalI GATC 5 cut(s) 14, 392, 684, 981, 1047
MboI GATC 5 cut(s) 12, 390, 682, 979, 1045
MboII GAAGA 8 cut(s) 14, 148, 179, 184, 794, 965, 970, 1163
MfeI CAATTG 1 cut(s) 1191
MflI RGATCY 2 cut(s) 390, 1045
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 6 cut(s) 109, 284, 482, 1040, 1191, 1207
MlyI GAGTC 2 cut(s) 309, 551
MmeI TCCRAC 2 cut(s) 83, 427
MnlI CCTC 6 cut(s) 21, 34, 207, 307, 483, 744
MroXI GAANNNNTTC 1 cut(s) 965
MseI TTAA 9 cut(s) 89, 237, 255, 480, 630, 777, 804, 1008, 1034
MspCI CTTAAG 3 cut(s) 629, 803, 1033
MspI CCGG 1 cut(s) 811
MunI CAATTG 1 cut(s) 1191
MwoI GCNNNNNNNGC 2 cut(s) 77, 814
NdeII GATC 5 cut(s) 12, 390, 682, 979, 1045
NlaIII CATG 8 cut(s) 76, 181, 422, 761, 973, 986, 1061, 1080
NlaIV GGNNCC 2 cut(s) 60, 392
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 828
PdmI GAANNNNTTC 1 cut(s) 965
PfeI GAWTC 4 cut(s) 46, 364, 824, 1029
PkrI GCNGC 3 cut(s) 157, 816, 1189
PleI GAGTC 2 cut(s) 308, 551
PpsI GAGTC 2 cut(s) 308, 551
PspN4I GGNNCC 2 cut(s) 60, 392
PspPI GGNCC 2 cut(s) 722, 1099
PstI CTGCAG 1 cut(s) 1120
PsuI RGATCY 2 cut(s) 390, 1045
RsaI GTAC 1 cut(s) 1056
RsaNI GTAC 1 cut(s) 1055
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 9 cut(s) 89, 237, 255, 480, 630, 777, 804, 1008, 1034
SatI GCNGC 3 cut(s) 156, 815, 1188
Sau3AI GATC 5 cut(s) 12, 390, 682, 979, 1045
Sau96I GGNCC 2 cut(s) 722, 1099
SbfI CCTGCAGG 1 cut(s) 1120
SchI GAGTC 2 cut(s) 309, 551
SdaI CCTGCAGG 1 cut(s) 1120
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 4 cut(s) 129, 183, 524, 1120
SfcI CTRYAG 2 cut(s) 246, 1116
SgrDI CGTCGACG 1 cut(s) 227
SinI GGWCC 2 cut(s) 722, 1099
SmlI CTYRAG 6 cut(s) 64, 629, 747, 803, 898, 1033
SmoI CTYRAG 6 cut(s) 64, 629, 747, 803, 898, 1033
Sse8387I CCTGCAGG 1 cut(s) 1120
Sse9I AATT 6 cut(s) 109, 284, 482, 1040, 1191, 1207
SsiI CCGC 2 cut(s) 188, 725
SspMI CTAG 5 cut(s) 54, 348, 618, 654, 741
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 4 cut(s) 413, 1070, 1157, 1175
TaiI ACGT 2 cut(s) 873, 948
TaqI TCGA 4 cut(s) 228, 298, 873, 1159
TasI AATT 6 cut(s) 109, 284, 482, 1040, 1191, 1207
TatI WGTACW 1 cut(s) 1054
TfiI GAWTC 4 cut(s) 46, 364, 824, 1029
Tru1I TTAA 9 cut(s) 89, 237, 255, 480, 630, 777, 804, 1008, 1034
Tru9I TTAA 9 cut(s) 89, 237, 255, 480, 630, 777, 804, 1008, 1034
TseI GCWGC 3 cut(s) 155, 814, 1187
TspDTI ATGAA 7 cut(s) 89, 149, 555, 677, 816, 958, 1074
TspGWI ACGGA 1 cut(s) 357
Vha464I CTTAAG 3 cut(s) 629, 803, 1033
VpaK11BI GGWCC 2 cut(s) 722, 1099
XagI CCTNNNNNAGG 1 cut(s) 278
XapI RAATTY 1 cut(s) 284
XmaJI CCTAGG 1 cut(s) 740
XmiI GTMKAC 2 cut(s) 228, 426
XmnI GAANNNNTTC 1 cut(s) 965
XspI CTAG 5 cut(s) 54, 348, 618, 654, 741
ZraI GACGTC 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.