AT2G14710

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
6298679 .. 6300150
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14710.1

Sequence Viewer

Length: 1089 bp
ATGGCGCATCTGAAAAACCTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCTAAATCTCTCGTTCGCTTCAGAACCGTATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGTTCATCAACAACCACAAGATGACGTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCATCGATCCCGTGATAGTGGTACGTGAGTTACCCTTAGGTATTCCAGGTTTAGAATCTTTGGAACTTAATAACTTGGTTGATTGCAATGAGTTGTTGGTATGTGTTAAGAACAATGGTGCGGTTGTTTGGAACCCTTGGTTGGGACAGAGTAGATGGATCCAGCCGAGTTTAAACCATTCTCCTATGGTATTCGACGGCATTGTATACGACAATAAGAAGTACAAGATGGTTGCTTTTTCTGGCTTGTGGAAAATCTATGACTTTTCCTCCGATGTGTGGATAGACCACAAGTCAAAATCTACTAATAGTAACACAAACGTGATTAATGTTCAAACTGCTGTATGCTTGAATGGAAATTTGTATTGGGTTTGTTTTCGTGAAAAGACTGATCCCTTGTGCTACCACATTCATAAATTCGGTTTCTCGAACAGCATATGGGTGAGATTTTGTAACCTACCTTTTGGGAGAAACCATGATGGGGATGCTCTTGTCCTTGGTGTCTTTAGAGGAGATCGGTTTTCGTTGCTAAAGCAATGCATGGTGACAAAGAAGATTGAGGTTTTTGTGACCGAGAACAAGATTAACCATGAGAATGGTGATGACGTGGTTTGGAAGAATTTCATGACTTTTTCAAGTCCTAACTTGCCTGATTTAGTAGAGACGGTAAAATTCTCTAATCCAAGTTACTTCATCGAAGGTAAAAGGCTTGTGGTGTGCTCTCGTGACAACACTGGTCACGCTTGGATCTATATACTGGGGGATAGTAAGTTGATCAGTAAAACTCGTATAGAGTGTGTGGTTGATCCTTGGCCTTTGCACTGTACCTTTGTTCCCAGTTTGGTACCGGTTCCTGCTCCATGCCGAAGAGAAGAACAAGCAGAATTACAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

362

Amino Acids

41.66

Weight (kDa)

8.56

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 1.2e-11 F-box domain
F-box-like PF12937 5 - 40 3.4e-07 F-box-like
FBA_1 PF07734 53 - 348 6.1e-76 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 399
AciI CCGC 1 cut(s) 314
AclWI GGATC 6 cut(s) 194, 346, 359, 578, 947, 992
AcsI RAATTY 4 cut(s) 550, 608, 811, 863
AcuI CTGAAG 1 cut(s) 64
AfaI GTAC 4 cut(s) 216, 416, 1018, 1038
AfiI CCNNNNNNNGG 5 cut(s) 25, 334, 335, 471, 673
AgeI ACCGGT 1 cut(s) 1039
AgsI TTSAA 4 cut(s) 38, 527, 544, 828
AhdI GACNNNNNGTC 1 cut(s) 484
AjiI CACGTC 1 cut(s) 799
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 4 cut(s) 317, 349, 541, 573
AleI CACNNNNGTG 1 cut(s) 512
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 6 cut(s) 194, 346, 359, 578, 947, 992
AoxI GGCC 1 cut(s) 1004
ApoI RAATTY 4 cut(s) 550, 608, 811, 863
AseI ATTAAT 1 cut(s) 519
AsiGI ACCGGT 1 cut(s) 1039
Asp700I GAANNNNTTC 1 cut(s) 812
Asp718I GGTACC 1 cut(s) 1036
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 3 cut(s) 646, 748, 803
AxyI CCTNAGG 1 cut(s) 229
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
BamHI GGATCC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 1036
BauI CACGAG 2 cut(s) 51, 915
Bbv12I GWGCWC 1 cut(s) 914
BccI CCATC 3 cut(s) 342, 415, 665
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 1 cut(s) 966
BcoDI GTCTC 1 cut(s) 848
Bme1390I CCNGG 1 cut(s) 240
BmeRI GACNNNNNGTC 1 cut(s) 484
BmgBI CACGTC 1 cut(s) 799
BmiI GGNNCC 4 cut(s) 326, 353, 1038, 1044
BmrFI CCNGG 1 cut(s) 240
BmrI ACTGGG 2 cut(s) 959, 1023
BmsI GCATC 3 cut(s) 16, 204, 667
BmuI ACTGGG 2 cut(s) 959, 1023
BplI GAGNNNNNCTC 2 cut(s) 32, 64
Bsa29I ATCGAT 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 218
BsaJI CCNNGG 4 cut(s) 23, 329, 688, 1001
BsaWI WCCGGW 1 cut(s) 1039
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 334, 335, 471, 673
Bse118I RCCGGY 1 cut(s) 1039
Bse1I ACTGG 3 cut(s) 931, 954, 1029
Bse21I CCTNAGG 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 286, 734
BseBI CCWGG 1 cut(s) 240
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 4 cut(s) 23, 329, 688, 1001
BseGI GGATG 1 cut(s) 682
BseLI CCNNNNNNNGG 5 cut(s) 25, 334, 335, 471, 673
BseMI GCAATG 2 cut(s) 286, 734
BseNI ACTGG 3 cut(s) 931, 954, 1029
BseRI GAGGAG 1 cut(s) 717
BshFI GGCC 1 cut(s) 1006
BshNI GGYRCC 1 cut(s) 1036
BshTI ACCGGT 1 cut(s) 1039
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 914
BsiSI CCGG 1 cut(s) 1040
BslFI GGGAC 2 cut(s) 41, 351
BslI CCNNNNNNNGG 5 cut(s) 25, 334, 335, 471, 673
BsmAI GTCTC 1 cut(s) 848
BsmBI CGTCTC 1 cut(s) 848
BsmFI GGGAC 2 cut(s) 41, 351
BsnI GGCC 1 cut(s) 1006
Bsp1286I GDGCHC 1 cut(s) 914
Bsp143I GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 1006
BspDI ATCGAT 1 cut(s) 198
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 4 cut(s) 326, 353, 1038, 1044
BspPI GGATC 6 cut(s) 194, 346, 359, 578, 947, 992
BspT107I GGYRCC 1 cut(s) 1036
BsrDI GCAATG 2 cut(s) 286, 734
BsrFI RCCGGY 1 cut(s) 1039
BsrI ACTGG 3 cut(s) 931, 954, 1029
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 4 cut(s) 23, 329, 688, 1001
BssMI GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
BssNAI GTATAC 1 cut(s) 400
BssSI CACGAG 2 cut(s) 51, 915
BssT1I CCWWGG 4 cut(s) 23, 329, 688, 1001
Bst1107I GTATAC 1 cut(s) 400
Bst2BI CACGAG 2 cut(s) 51, 915
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 3 cut(s) 88, 859, 1016
Bst6I CTCTTC 2 cut(s) 33, 1054
BstBAI YACGTR 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 163, 229
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 682
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 7 cut(s) 202, 354, 586, 709, 942, 969, 1000
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 351, 939
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 2 cut(s) 351, 939
BstZ17I GTATAC 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 229
BsuRI GGCC 1 cut(s) 1006
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 1 cut(s) 682
BtsIMutI CAGTG 2 cut(s) 924, 1012
CciI TCATGA 1 cut(s) 816
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 1039
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 4 cut(s) 215, 415, 1017, 1037
CspAI ACCGGT 1 cut(s) 1039
CviAII CATG 6 cut(s) 24, 668, 733, 782, 817, 1053
CviJI RGCY 4 cut(s) 358, 438, 901, 1006
CviKI_1 RGCY 4 cut(s) 358, 438, 901, 1006
CviQI GTAC 4 cut(s) 215, 415, 1017, 1037
DdeI CTNAG 2 cut(s) 163, 229
DpnI GATC 7 cut(s) 201, 353, 585, 708, 941, 968, 999
DpnII GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
DraI TTTAAA 1 cut(s) 366
DriI GACNNNNNGTC 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 33, 1054
Eam1105I GACNNNNNGTC 1 cut(s) 484
EarI CTCTTC 2 cut(s) 33, 1054
Eco130I CCWWGG 4 cut(s) 23, 329, 688, 1001
Eco57I CTGAAG 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 4 cut(s) 23, 329, 688, 1001
EcoT22I ATGCAT 1 cut(s) 734
ErhI CCWWGG 4 cut(s) 23, 329, 688, 1001
Esp3I CGTCTC 1 cut(s) 848
FaeI CATG 6 cut(s) 27, 671, 736, 785, 820, 1056
FaqI GGGAC 2 cut(s) 41, 351
FatI CATG 6 cut(s) 23, 667, 732, 781, 816, 1052
FauNDI CATATG 1 cut(s) 629
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 399
FokI GGATG 1 cut(s) 689
GlaI GCGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 1006
HapII CCGG 1 cut(s) 1040
HhaI GCGC 1 cut(s) 7
Hin1II CATG 6 cut(s) 27, 671, 736, 785, 820, 1056
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 3 cut(s) 646, 748, 803
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 3 cut(s) 12, 83, 466
Hpy188III TCNNGA 4 cut(s) 572, 619, 817, 917
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 2 cut(s) 119, 392
HpyAV CCTTC 2 cut(s) 29, 884
HpyCH4III ACNGT 3 cut(s) 88, 859, 1016
HpyCH4IV ACGT 5 cut(s) 125, 149, 217, 513, 798
HpyCH4V TGCA 3 cut(s) 279, 732, 1012
HpyF3I CTNAG 2 cut(s) 163, 229
HpySE526I ACGT 5 cut(s) 125, 149, 217, 513, 798
Hsp92II CATG 6 cut(s) 27, 671, 736, 785, 820, 1056
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 1040
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
LmnI GCTCC 1 cut(s) 1054
LweI GCATC 3 cut(s) 16, 204, 667
MaeII ACGT 5 cut(s) 125, 149, 217, 513, 798
MaeIII GTNAC 8 cut(s) 222, 503, 644, 736, 760, 878, 917, 929
MalI GATC 7 cut(s) 201, 353, 585, 708, 941, 968, 999
MboI GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
MboII GAAGA 5 cut(s) 50, 757, 820, 1071, 1076
MflI RGATCY 2 cut(s) 351, 939
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 5 cut(s) 550, 608, 811, 863, 1076
MnlI CCTC 3 cut(s) 472, 695, 745
Mph1103I ATGCAT 1 cut(s) 734
MroXI GAANNNNTTC 1 cut(s) 812
MseI TTAA 5 cut(s) 261, 300, 365, 519, 777
MslI CAYNNNNRTG 3 cut(s) 512, 632, 786
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 1 cut(s) 240
MssI GTTTAAAC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 23
NdeI CATATG 1 cut(s) 629
NdeII GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
NlaIII CATG 6 cut(s) 27, 671, 736, 785, 820, 1056
NlaIV GGNNCC 4 cut(s) 326, 353, 1038, 1044
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 4 cut(s) 736, 760, 917, 929
NsiI ATGCAT 1 cut(s) 734
OliI CACNNNNGTG 1 cut(s) 512
PagI TCATGA 1 cut(s) 816
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 812
PfeI GAWTC 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 1039
PmeI GTTTAAAC 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 218
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 4 cut(s) 326, 353, 1038, 1044
PsuI RGATCY 2 cut(s) 351, 939
RsaI GTAC 4 cut(s) 216, 416, 1018, 1038
RsaNI GTAC 4 cut(s) 215, 415, 1017, 1037
RseI CAYNNNNRTG 3 cut(s) 512, 632, 786
SaqAI TTAA 5 cut(s) 261, 300, 365, 519, 777
Sau3AI GATC 7 cut(s) 199, 351, 583, 706, 939, 966, 997
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 3 cut(s) 16, 204, 667
SmiMI CAYNNNNRTG 3 cut(s) 512, 632, 786
Sse9I AATT 5 cut(s) 550, 608, 811, 863, 1076
SsiI CCGC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 4 cut(s) 23, 329, 688, 1001
TaaI ACNGT 3 cut(s) 88, 859, 1016
TaiI ACGT 5 cut(s) 128, 152, 220, 516, 801
TaqI TCGA 6 cut(s) 92, 114, 198, 387, 620, 888
TaqII GACCGA 1 cut(s) 779
TasI AATT 5 cut(s) 550, 608, 811, 863, 1076
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 5 cut(s) 261, 300, 365, 519, 777
Tru9I TTAA 5 cut(s) 261, 300, 365, 519, 777
TscAI CASTG 2 cut(s) 931, 1019
TseFI GTSAC 4 cut(s) 736, 760, 917, 929
Tsp45I GTSAC 4 cut(s) 736, 760, 917, 929
TspDTI ATGAA 4 cut(s) 118, 593, 805, 874
TspRI CASTG 2 cut(s) 931, 1019
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 4 cut(s) 550, 608, 811, 863
XmiI GTMKAC 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 812
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.