AT1G51290

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
19012173 .. 19013306
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51290.1

Sequence Viewer

Length: 1134 bp
ATGGTCTCGGTGAACCTTCCATGGGAATTAGTGGAGGAGATCCTATATAGGGTTCCACCTCAATCTCTTGCTCGATTCAGGACCGTATGTAAGCAATGGAATTCTCTTTTTGACGACAACAAGTTTGTGAACGACCACTTGGTTCGATCACGACCACAATTCATGTTCCGAACAGATTCTAAGATGTATTCGGTAGCCGTTAATTTCAGTGGTCCATGGATAGAGGTCCATGAGTTAACCTTAGACATTCCTGGTTTGAATTGTGAGATGCCAATATGGCTATACAACTATGTTGATTGTGATGGCTTGTTGTTTTGTACTAGCTACAAGTTTAAAGGGGTCTTGATTTGGAACCCCTGGTTGAAACAAACTAGATTATTCGCATCCAATCATCATTATCCAACGAAATATGTCATAGGTTATGATAATAAGAAACGATACAAGGTGCTTGATTATGAATTTGAACCATCATCAAAATTGACGATTTATGAGATTGGGTTATATTCAAAGAAAGTTAAAGATTTGGAGTCTGATAGTTCTTGGTCAGTTGTCCAATCCAATAGTGTATCTCTGAATGGAACTTTATATTGGGCTGGTGTAGATGTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAGAGACTAACAACTTTTTGTCGCCTACCTTTGAAGTACAATGAAGACAATATTCTAGCCCTTGCGGTTTTTAGGAAAGATCGGTTTTCGTTGTTAAAACTATGCAATAAAACATCAAAGATAAAGATTTGGTTGACAAAGAATAGTATAAATAATAGGGAGATAGGATTAGTAGAGGACGTGGTGTGGATAAAACTCATGACAGTGTTAATACCTGATTTCCCTAAATTGCCATTTCGTTGGTATAATCGTCCTGACCTAACTTACTTCCTTGACAACGATGATGCTAAGAGGCTCGTTATCTGTTGTTATGATGAAACTCAACAAGTTTACATCTACATCGTAAGAAGAAATATTGTAAAAAAAATCAAAATAGATCTCTTTGAGGATCTACTTGATCAATCTAGTCCTCATCTCCGTACTTATATCCCCAGTTTGGTTCGGCCTACCCAGGTCAAAGAGGACAATAACAAACTATATGTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

377

Amino Acids

44.62

Weight (kDa)

8.88

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 42 1.9e-10 F-box domain
F-box-like PF12937 5 - 40 2.2e-06 F-box-like
FBA_1 PF07734 54 - 363 5e-70 F-box associated beta propeller domain
FBA_3 PF08268 95 - 344 1e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1132
AciI CCGC 1 cut(s) 710
AclWI GGATC 2 cut(s) 34, 1041
AcsI RAATTY 2 cut(s) 100, 458
AcuI CTGAAG 1 cut(s) 616
AfaI GTAC 3 cut(s) 319, 683, 1066
AfiI CCNNNNNNNGG 3 cut(s) 22, 49, 1081
AgsI TTSAA 6 cut(s) 259, 364, 464, 507, 642, 679
AjiI CACGTC 1 cut(s) 826
AjnI CCWGG 3 cut(s) 250, 356, 1095
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 571, 603
AluBI AGCT 2 cut(s) 324, 630
AluI AGCT 2 cut(s) 324, 630
Alw26I GTCTC 2 cut(s) 10, 643
AlwI GGATC 2 cut(s) 34, 1041
AoxI GGCC 1 cut(s) 1088
ApoI RAATTY 2 cut(s) 100, 458
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
Asp700I GAANNNNTTC 1 cut(s) 175
AspS9I GGNCC 3 cut(s) 81, 212, 226
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 3 cut(s) 81, 212, 226
BbsI GAAGAC 1 cut(s) 696
BccI CCATC 2 cut(s) 296, 475
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 3 cut(s) 252, 358, 1097
BclI TGATCA 1 cut(s) 1042
BcoDI GTCTC 2 cut(s) 10, 643
BfaI CTAG 4 cut(s) 321, 372, 701, 1050
BglI GCCNNNNNGGC 1 cut(s) 277
BglII AGATCT 1 cut(s) 1021
Bme1390I CCNGG 3 cut(s) 252, 358, 1097
Bme18I GGWCC 3 cut(s) 81, 212, 226
BmgBI CACGTC 1 cut(s) 826
BmgT120I GGNCC 3 cut(s) 81, 212, 226
BmiI GGNNCC 2 cut(s) 54, 353
BmrFI CCNGG 3 cut(s) 252, 358, 1097
BmrI ACTGGG 1 cut(s) 1071
BmsI GCATC 3 cut(s) 258, 392, 919
BmuI ACTGGG 1 cut(s) 1071
BpiI GAAGAC 1 cut(s) 696
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 4 cut(s) 20, 215, 356, 1095
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 49, 1081
Bse1I ACTGG 1 cut(s) 1077
Bse3DI GCAATG 1 cut(s) 101
BseBI CCWGG 3 cut(s) 252, 358, 1097
BseDI CCNNGG 4 cut(s) 20, 215, 356, 1095
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 3 cut(s) 22, 49, 1081
BseMI GCAATG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 1077
BseRI GAGGAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 1090
BslI CCNNNNNNNGG 3 cut(s) 22, 49, 1081
BsmAI GTCTC 2 cut(s) 10, 643
BsnI GGCC 1 cut(s) 1090
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
Bsp19I CCATGG 2 cut(s) 20, 215
BspACI CCGC 1 cut(s) 710
BspANI GGCC 1 cut(s) 1090
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 2 cut(s) 54, 353
BspPI GGATC 2 cut(s) 34, 1041
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 1 cut(s) 1077
BssECI CCNNGG 4 cut(s) 20, 215, 356, 1095
BssMI GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
BssT1I CCWWGG 2 cut(s) 20, 215
Bst2UI CCWGG 3 cut(s) 252, 358, 1097
Bst4CI ACNGT 2 cut(s) 85, 850
BstDEI CTNAG 3 cut(s) 180, 241, 933
BstDSI CCRYGG 2 cut(s) 20, 215
BstF5I GGATG 1 cut(s) 383
BstKTI GATC 6 cut(s) 42, 149, 727, 1024, 1036, 1045
BstMAI GTCTC 2 cut(s) 10, 643
BstMBI GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 3 cut(s) 252, 358, 1097
BstSCI CCNGG 3 cut(s) 250, 356, 1095
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 3 cut(s) 39, 1021, 1033
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 3 cut(s) 39, 1021, 1033
BsuRI GGCC 1 cut(s) 1090
BtgI CCRYGG 2 cut(s) 20, 215
BtrI CACGTC 1 cut(s) 826
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 214, 855
CciI TCATGA 1 cut(s) 843
Cfr13I GGNCC 3 cut(s) 81, 212, 226
Csp6I GTAC 3 cut(s) 318, 682, 1065
CviAII CATG 5 cut(s) 21, 163, 216, 230, 844
CviJI RGCY 9 cut(s) 197, 280, 306, 324, 593, 630, 704, 940, 1090
CviKI_1 RGCY 9 cut(s) 197, 280, 306, 324, 593, 630, 704, 940, 1090
CviQI GTAC 3 cut(s) 318, 682, 1065
DdeI CTNAG 3 cut(s) 180, 241, 933
DpnI GATC 6 cut(s) 41, 148, 726, 1023, 1035, 1044
DpnII GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
DraI TTTAAA 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 20, 215
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 3 cut(s) 81, 212, 226
Eco57I CTGAAG 1 cut(s) 616
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 250, 356, 1095
EcoT14I CCWWGG 2 cut(s) 20, 215
ErhI CCWWGG 2 cut(s) 20, 215
FaeI CATG 5 cut(s) 24, 166, 219, 233, 847
FatI CATG 5 cut(s) 20, 162, 215, 229, 843
FbaI TGATCA 1 cut(s) 1042
FokI GGATG 1 cut(s) 370
FspBI CTAG 4 cut(s) 321, 372, 701, 1050
HaeIII GGCC 1 cut(s) 1090
Hin1II CATG 5 cut(s) 24, 166, 219, 233, 847
HincII GTYRAC 3 cut(s) 237, 607, 780
HindII GTYRAC 3 cut(s) 237, 607, 780
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 3 cut(s) 75, 176, 527
HpaI GTTAAC 2 cut(s) 237, 607
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 6 cut(s) 13, 130, 237, 607, 780, 976
Hpy188I TCNGA 3 cut(s) 170, 532, 573
Hpy188III TCNNGA 5 cut(s) 79, 150, 343, 844, 899
Hpy8I GTNNAC 6 cut(s) 13, 130, 237, 607, 780, 976
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 85, 850
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 1 cut(s) 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 3 cut(s) 180, 241, 933
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 5 cut(s) 24, 166, 219, 233, 847
Ksp22I TGATCA 1 cut(s) 1042
KspAI GTTAAC 2 cut(s) 237, 607
Kzo9I GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
LweI GCATC 3 cut(s) 258, 392, 919
MaeI CTAG 4 cut(s) 321, 372, 701, 1050
MaeII ACGT 1 cut(s) 825
MalI GATC 6 cut(s) 41, 148, 726, 1023, 1035, 1044
MboI GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
MboII GAAGA 2 cut(s) 701, 1005
MflI RGATCY 3 cut(s) 39, 1021, 1033
MluCI AATT 8 cut(s) 26, 100, 158, 202, 259, 458, 476, 872
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 8 cut(s) 28, 69, 217, 814, 930, 1024, 1065, 1099
MroXI GAANNNNTTC 1 cut(s) 175
MseI TTAA 7 cut(s) 201, 236, 333, 516, 606, 740, 854
MslI CAYNNNNRTG 1 cut(s) 848
MspR9I CCNGG 3 cut(s) 252, 358, 1097
MvaI CCWGG 3 cut(s) 252, 358, 1097
MwoI GCNNNNNNNGC 1 cut(s) 277
NcoI CCATGG 2 cut(s) 20, 215
NdeII GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
NlaIII CATG 5 cut(s) 24, 166, 219, 233, 847
NlaIV GGNNCC 2 cut(s) 54, 353
PagI TCATGA 1 cut(s) 843
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 75, 176
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PsiI TTATAA 1 cut(s) 1132
Psp6I CCWGG 3 cut(s) 250, 356, 1095
PspGI CCWGG 3 cut(s) 250, 356, 1095
PspN4I GGNNCC 2 cut(s) 54, 353
PspPI GGNCC 3 cut(s) 81, 212, 226
PsuI RGATCY 3 cut(s) 39, 1021, 1033
RsaI GTAC 3 cut(s) 319, 683, 1066
RsaNI GTAC 3 cut(s) 318, 682, 1065
RseI CAYNNNNRTG 1 cut(s) 848
SaqAI TTAA 7 cut(s) 201, 236, 333, 516, 606, 740, 854
Sau3AI GATC 6 cut(s) 39, 146, 724, 1021, 1033, 1042
Sau96I GGNCC 3 cut(s) 81, 212, 226
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 3 cut(s) 252, 358, 1097
SfaNI GCATC 3 cut(s) 258, 392, 919
SinI GGWCC 3 cut(s) 81, 212, 226
SmiMI CAYNNNNRTG 1 cut(s) 848
Sse9I AATT 8 cut(s) 26, 100, 158, 202, 259, 458, 476, 872
SsiI CCGC 1 cut(s) 710
SspI AATATT 2 cut(s) 697, 1000
SspMI CTAG 4 cut(s) 321, 372, 701, 1050
StyD4I CCNGG 3 cut(s) 250, 356, 1095
StyI CCWWGG 2 cut(s) 20, 215
TaaI ACNGT 2 cut(s) 85, 850
TaiI ACGT 1 cut(s) 828
TaqI TCGA 2 cut(s) 73, 145
TasI AATT 8 cut(s) 26, 100, 158, 202, 259, 458, 476, 872
TatI WGTACW 2 cut(s) 317, 681
TfiI GAWTC 2 cut(s) 75, 176
Tru1I TTAA 7 cut(s) 201, 236, 333, 516, 606, 740, 854
Tru9I TTAA 7 cut(s) 201, 236, 333, 516, 606, 740, 854
TscAI CASTG 2 cut(s) 214, 855
TspDTI ATGAA 5 cut(s) 151, 471, 610, 702, 975
TspGWI ACGGA 1 cut(s) 1052
TspRI CASTG 2 cut(s) 214, 855
VpaK11BI GGWCC 3 cut(s) 81, 212, 226
XapI RAATTY 2 cut(s) 100, 458
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 4 cut(s) 321, 372, 701, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.