AT3G51171

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
19010805 .. 19012008
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51171.1

Sequence Viewer

Length: 771 bp
ATGGTTCCGCTTCCATGGGAGCTAGAGGAAGATATACTGTCTCGACTTGCAGCCCAATCTCTTGTTCGATTCAGATCCGTTTGCAAACGATGGAATTATCTTTTCGATGAAAAGAGTTTCATCAAAAACCACTTCGCTCGTGCTTGTCCTCAGTTCATCTTCATGACCGATTCCAATATTTATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTAAGTTACGTGTGCTAGACTCCTCTGGTATCCCTTACCGTGACTGGAAATTTGCTTACATAACCATCACTGCTTGCGATGGGTTCTTGTTTTGTAACTCTTGGGCTAGTCCTAAGGGGACAGCTTTTTGGAATCCGTGGTTGAAACAGGTTAAATGGATCGAGTACGAGGATAAAGGTTTCAATGTCTGTGGCTTAGGATACGATAATACTAGAGACGGAAAGGTTTACAAAATCTTGGGGTATTTAATGTGTCGCCCTGAAGATGGGAGCTCTTACGTATACCACCAGAGAGTTGCGATCTACGACTGTGCCTCTCACGCGTTCAAGTTTATTGAAATATCGAACAAGGACTGGTTCCTAACCGATGTTACACGATTCAGTGTGTCTTTGAACGGAAATCTCTATTGGCTTTCTCCTATTCCCAACACTGATGACTTTCTCATCCAATGTTTTGATTTCTCTAGGGAGATATGCAAACCCTTTTGTCTTCTTCCTTGTCGGAAGTTTGATGCTTTCGATTTACTTGTAAGTTTTCAGGGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

256

Amino Acids

29.92

Weight (kDa)

6.31

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 1e-07 F-box domain
F-box-like PF12937 4 - 42 2.5e-06 F-box-like
FBA_1 PF07734 51 - 246 3.3e-45 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 504
AccII CGCG 1 cut(s) 545
AciI CCGC 1 cut(s) 8
AclWI GGATC 3 cut(s) 69, 209, 389
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 488
AflIII ACRYGT 2 cut(s) 232, 543
AgsI TTSAA 5 cut(s) 367, 406, 550, 560, 616
AjuI GAANNNNNNNTTGG 4 cut(s) 48, 80, 613, 645
AluBI AGCT 3 cut(s) 22, 347, 495
AluI AGCT 3 cut(s) 22, 347, 495
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 3 cut(s) 45, 206, 432
AlwI GGATC 3 cut(s) 69, 209, 389
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AxyI CCTNAGG 1 cut(s) 336
BanII GRGCYC 1 cut(s) 497
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 62
BccI CCATC 4 cut(s) 84, 296, 296, 482
BceAI ACGGC 1 cut(s) 223
BciVI GTATCC 2 cut(s) 263, 416
BcoDI GTCTC 3 cut(s) 45, 206, 432
BfaI CTAG 5 cut(s) 23, 239, 330, 435, 687
BfuI GTATCC 2 cut(s) 263, 416
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 6, 581
BmsI GCATC 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 704
Bpu10I CCTNAGC 1 cut(s) 418
BsaAI YACGTR 2 cut(s) 233, 502
BsaBI GATNNNNATC 2 cut(s) 73, 191
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 14, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 272, 581
Bse21I CCTNAGG 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 73, 191
BseDI CCNNGG 2 cut(s) 14, 359
BseGI GGATG 1 cut(s) 666
BseJI GATNNNNATC 2 cut(s) 73, 191
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 272, 581
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 497
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 3 cut(s) 45, 206, 432
BsmBI CGTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 355
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 5 cut(s) 74, 192, 214, 381, 522
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 545
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 6, 581
BspPI GGATC 3 cut(s) 69, 209, 389
BspTNI GGTCTC 1 cut(s) 206
BsrI ACTGG 2 cut(s) 272, 581
BssECI CCNNGG 2 cut(s) 14, 359
BssMI GATC 5 cut(s) 74, 192, 214, 381, 522
BssNAI GTATAC 1 cut(s) 505
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 14
Bst1107I GTATAC 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 39, 263, 533
BstBAI YACGTR 2 cut(s) 233, 502
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 150, 336, 418
BstDSI CCRYGG 2 cut(s) 14, 359
BstF5I GGATG 1 cut(s) 666
BstFNI CGCG 1 cut(s) 545
BstKTI GATC 5 cut(s) 77, 195, 217, 384, 525
BstMAI GTCTC 3 cut(s) 45, 206, 432
BstMBI GATC 5 cut(s) 74, 192, 214, 381, 522
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstSNI TACGTA 1 cut(s) 502
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 704
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 505
Bsu36I CCTNAGG 1 cut(s) 336
BsuI GTATCC 2 cut(s) 263, 416
BtgI CCRYGG 2 cut(s) 14, 359
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 666
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 291, 610, 651
Cac8I GCNNGC 1 cut(s) 298
CciI TCATGA 1 cut(s) 162
Csp6I GTAC 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 15, 163
CviJI RGCY 7 cut(s) 22, 53, 329, 347, 417, 495, 634
CviKI_1 RGCY 7 cut(s) 22, 53, 329, 347, 417, 495, 634
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 3 cut(s) 150, 336, 418
DpnI GATC 5 cut(s) 76, 194, 216, 383, 524
DpnII GATC 5 cut(s) 74, 192, 214, 381, 522
Ecl136II GAGCTC 1 cut(s) 495
Eco105I TACGTA 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 504
Eco81I CCTNAGG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 2 cut(s) 18, 166
FaiI YATR 6 cut(s) 16, 35, 164, 284, 505, 697
FaqI GGGAC 1 cut(s) 355
FatI CATG 2 cut(s) 14, 162
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 5 cut(s) 23, 239, 330, 435, 687
GluI GCNGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 18, 166
HinfI GANTC 5 cut(s) 69, 170, 242, 355, 600
Hpy166II GTNNAC 2 cut(s) 451, 505
Hpy188I TCNGA 2 cut(s) 74, 726
Hpy188III TCNNGA 3 cut(s) 42, 163, 203
Hpy8I GTNNAC 2 cut(s) 451, 505
Hpy99I CGWCG 1 cut(s) 209
HpyCH4III ACNGT 3 cut(s) 39, 263, 533
HpyCH4IV ACGT 2 cut(s) 232, 501
HpyCH4V TGCA 3 cut(s) 50, 84, 699
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 3 cut(s) 150, 336, 418
HpySE526I ACGT 2 cut(s) 232, 501
Hsp92II CATG 2 cut(s) 18, 166
Kzo9I GATC 5 cut(s) 74, 192, 214, 381, 522
LmnI GCTCC 2 cut(s) 19, 492
LpnPI CCDG 7 cut(s) 234, 253, 356, 495, 524, 562, 746
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 724
MaeI CTAG 5 cut(s) 23, 239, 330, 435, 687
MaeII ACGT 2 cut(s) 232, 501
MaeIII GTNAC 4 cut(s) 228, 263, 317, 592
MalI GATC 5 cut(s) 76, 194, 216, 383, 524
MboI GATC 5 cut(s) 74, 192, 214, 381, 522
MboII GAAGA 5 cut(s) 41, 151, 497, 704, 707
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 2 cut(s) 94, 272
MluI ACGCGT 1 cut(s) 543
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 242, 704
MnlI CCTC 5 cut(s) 19, 159, 256, 385, 547
MseI TTAA 3 cut(s) 225, 375, 470
MslI CAYNNNNRTG 1 cut(s) 161
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 542
NcoI CCATGG 1 cut(s) 14
NdeII GATC 5 cut(s) 74, 192, 214, 381, 522
NlaIII CATG 2 cut(s) 18, 166
NlaIV GGNNCC 2 cut(s) 6, 581
NmuCI GTSAC 1 cut(s) 263
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 4 cut(s) 69, 170, 355, 600
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Ppu21I YACGTR 2 cut(s) 233, 502
Psp124BI GAGCTC 1 cut(s) 497
PspN4I GGNNCC 2 cut(s) 6, 581
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 497
SaqAI TTAA 3 cut(s) 225, 375, 470
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 5 cut(s) 74, 192, 214, 381, 522
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 497
SetI ASST 8 cut(s) 24, 235, 349, 375, 403, 450, 497, 504
SfaNI GCATC 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 161
SnaBI TACGTA 1 cut(s) 502
Sse9I AATT 2 cut(s) 94, 272
SsiI CCGC 1 cut(s) 8
SspI AATATT 1 cut(s) 178
SspMI CTAG 5 cut(s) 23, 239, 330, 435, 687
SstI GAGCTC 1 cut(s) 497
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 3 cut(s) 39, 263, 533
TaiI ACGT 2 cut(s) 235, 504
TaqI TCGA 8 cut(s) 43, 67, 105, 185, 204, 384, 566, 741
TaqII GACCGA 2 cut(s) 182, 188
TasI AATT 2 cut(s) 94, 272
TfiI GAWTC 4 cut(s) 69, 170, 355, 600
Tru1I TTAA 3 cut(s) 225, 375, 470
Tru9I TTAA 3 cut(s) 225, 375, 470
TscAI CASTG 3 cut(s) 298, 610, 658
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 4 cut(s) 109, 123, 145, 151
TspGWI ACGGA 4 cut(s) 67, 348, 456, 633
TspRI CASTG 3 cut(s) 298, 610, 658
XapI RAATTY 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 5 cut(s) 23, 239, 330, 435, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.