AT3G21120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
7406326 .. 7407429
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21120.1

Sequence Viewer

Length: 1104 bp
ATGCATCTTCCGGAGGATTTGGTCCTGGAGATACTCTCTAAGGTTCCGGCTGTATCTCTGGCACGATTTCGATCGACTTGCAGAAGATGGAACGCTCTGGTCGTCGATGGAAGCTTTGCTAAGAAGCACTATGCGTACGGTCCAAGGCAGTATCCTATAGTTATTATGTTGATCGAGTTTAGGGTTTATTTAGTGAGTATAGATCTCCATGGAATTAACAATAACAACGGTGCCCCATCTGCGAAGCTAACAGGTCAATTCAGCCTAAAAGACCCTCTTTCTAATTCTTCAGAAGAAGTTGATATACGTAACGCCTTTCACTGCGACGGCTTATTGCTATGCTGTACCAAAGACAGGAGATTGGTTGTTTGGAATCCATGTTCAGGGGAAACCAAGTGGATCCAACCCAGAAATTCCTACAAGGAATCAGACTTATATGCCCTAGGTTACGATAACAGATCCTCCTCCTACAAAATCTTGAGGATGCATCCCGTTGGTAACCCATTTCACATTGAGTCCGAAGTCTATGACTTTGCTTCTCATTCGTGGAGAAGTGTTGGTGTGACTACCGACTTCCACATACAAACGAATGAGAGTTATGGCATGAATGTCAAGGGAACTACTTACTGGTTTGCTCTTAGTAAAGACTGGTGGTCATCTGACGATCGTCGTTTCTTACTAAGTTTTGATTTTTCAAGAGAGAGATTTCAATGTCTGCCTCTTCCGGCGGATGTTAAAAATCTACATCTTACTGTGGTTTTATCGGTGACTAGAGAAGAGCAACAACTATGTATGTTTGCTACTCTTGGCGCTGGTAATGTATACAAATTAGATGTATTCGTAGCAACTAAGACAGAGGAGACTACGGGAGAACTGACATGGACCAAGTTCCGTCGTTTTCACTCTAAGATTTGTATAAATGTCTCGGCCGACCATGAGAAGAAAGTTTTAGTGCCTCACCATATACTCCTACCCTACTACAACATCTTACACATTGTGGGAGAGGATATATACATAAGACAAGTGAATAAAGATGGAGATATCGGATGCCCAATTCTCCTTACTTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

367

Amino Acids

42.12

Weight (kDa)

7.63

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 36 5.4e-10 F-box domain
F-box-like PF12937 2 - 42 4.5e-09 F-box-like
FBA_1 PF07734 54 - 363 2.8e-85 F-box associated beta propeller domain
FBA_3 PF08268 104 - 249 2.1e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 822
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 1 cut(s) 728
AclWI GGATC 3 cut(s) 394, 407, 453
AcoI YGGCCR 1 cut(s) 927
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 997
AfaI GTAC 2 cut(s) 137, 346
AfiI CCNNNNNNNGG 2 cut(s) 354, 383
AgsI TTSAA 3 cut(s) 696, 710, 1085
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 1 cut(s) 24
AloI GAACNNNNNNTCC 2 cut(s) 364, 396
AluBI AGCT 2 cut(s) 114, 247
AluI AGCT 2 cut(s) 114, 247
Alw26I GTCTC 2 cut(s) 854, 928
AlwI GGATC 3 cut(s) 394, 407, 453
Aor13HI TCCGGA 1 cut(s) 10
AoxI GGCC 1 cut(s) 927
ApoI RAATTY 1 cut(s) 412
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 1 cut(s) 812
AspS9I GGNCC 3 cut(s) 22, 140, 882
AsuHPI GGTGA 2 cut(s) 778, 950
AvaII GGWCC 3 cut(s) 22, 140, 882
AvrII CCTAGG 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 288, 320
BccI CCATC 4 cut(s) 81, 101, 244, 1028
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 854, 928
BfaI CTAG 3 cut(s) 443, 771, 1102
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 813
BfuI GTATCC 1 cut(s) 162
BglII AGATCT 1 cut(s) 202
BlnI CCTAGG 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 3 cut(s) 22, 140, 882
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgT120I GGNCC 3 cut(s) 22, 140, 882
BmiI GGNNCC 3 cut(s) 45, 232, 401
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 4 cut(s) 13, 474, 496, 1037
BoxI GACNNNNGTC 1 cut(s) 666
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 499
BsaAI YACGTR 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 143, 208, 442
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 383
Bse1I ACTGG 2 cut(s) 632, 653
Bse8I GATNNNNATC 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 10
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 3 cut(s) 143, 208, 442
BseGI GGATG 4 cut(s) 487, 489, 736, 1052
BseJI GATNNNNATC 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 354, 383
BseNI ACTGG 2 cut(s) 632, 653
BseRI GAGGAG 2 cut(s) 454, 872
BseSI GKGCMC 1 cut(s) 235
BseX3I CGGCCG 1 cut(s) 927
Bsh1285I CGRYCG 3 cut(s) 74, 667, 930
BshFI GGCC 1 cut(s) 929
BshNI GGYRCC 1 cut(s) 230
BsiEI CGRYCG 3 cut(s) 74, 667, 930
BsiSI CCGG 3 cut(s) 11, 47, 725
BsiWI CGTACG 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 354, 383
BsmAI GTCTC 2 cut(s) 854, 928
BsnI GGCC 1 cut(s) 929
Bsp1286I GDGCHC 1 cut(s) 235
Bsp13I TCCGGA 1 cut(s) 10
Bsp143I GATC 6 cut(s) 71, 171, 202, 399, 458, 664
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 728
BspANI GGCC 1 cut(s) 929
BspEI TCCGGA 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 45, 232, 401
BspPI GGATC 3 cut(s) 394, 407, 453
BspQI GCTCTTC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 2 cut(s) 632, 653
BssECI CCNNGG 3 cut(s) 143, 208, 442
BssMI GATC 6 cut(s) 71, 171, 202, 399, 458, 664
BssNAI GTATAC 1 cut(s) 823
BssT1I CCWWGG 3 cut(s) 143, 208, 442
Bst1107I GTATAC 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 3 cut(s) 140, 230, 754
Bst6I CTCTTC 2 cut(s) 726, 771
BstBAI YACGTR 1 cut(s) 308
BstDEI CTNAG 6 cut(s) 39, 120, 638, 680, 849, 906
BstDSI CCRYGG 1 cut(s) 208
BstEII GGTNACC 1 cut(s) 497
BstF5I GGATG 4 cut(s) 487, 489, 736, 1052
BstH2I RGCGCY 1 cut(s) 813
BstHHI GCGC 1 cut(s) 812
BstKTI GATC 6 cut(s) 74, 174, 205, 402, 461, 667
BstMAI GTCTC 2 cut(s) 854, 928
BstMBI GATC 6 cut(s) 71, 171, 202, 399, 458, 664
BstMCI CGRYCG 3 cut(s) 74, 667, 930
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 26
BstPAI GACNNNNGTC 1 cut(s) 666
BstPI GGTNACC 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 235
BstSNI TACGTA 1 cut(s) 308
BstX2I RGATCY 3 cut(s) 202, 399, 458
BstYI RGATCY 3 cut(s) 202, 399, 458
BstZ17I GTATAC 1 cut(s) 823
BstZI CGGCCG 1 cut(s) 927
BsuI GTATCC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 929
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 4 cut(s) 487, 489, 736, 1052
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 319
CfoI GCGC 1 cut(s) 812
Cfr13I GGNCC 3 cut(s) 22, 140, 882
Csp6I GTAC 2 cut(s) 136, 345
CviAII CATG 5 cut(s) 209, 378, 604, 879, 935
CviJI RGCY 6 cut(s) 50, 114, 247, 264, 330, 929
CviKI_1 RGCY 6 cut(s) 50, 114, 247, 264, 330, 929
CviQI GTAC 2 cut(s) 136, 345
DdeI CTNAG 6 cut(s) 39, 120, 638, 680, 849, 906
DpnI GATC 6 cut(s) 73, 173, 204, 401, 460, 666
DpnII GATC 6 cut(s) 71, 171, 202, 399, 458, 664
DraIII CACNNNGTG 1 cut(s) 997
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 927
EagI CGGCCG 1 cut(s) 927
Eam1104I CTCTTC 2 cut(s) 726, 771
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 2 cut(s) 726, 771
EciI GGCGGA 1 cut(s) 743
EclXI CGGCCG 1 cut(s) 927
Eco105I TACGTA 1 cut(s) 308
Eco130I CCWWGG 3 cut(s) 143, 208, 442
Eco32I GATATC 1 cut(s) 1042
Eco47I GGWCC 3 cut(s) 22, 140, 882
Eco52I CGGCCG 1 cut(s) 927
Eco57I CTGAAG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 1042
EcoT14I CCWWGG 3 cut(s) 143, 208, 442
EcoT22I ATGCAT 2 cut(s) 6, 489
ErhI CCWWGG 3 cut(s) 143, 208, 442
FaeI CATG 5 cut(s) 212, 381, 607, 882, 938
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 5 cut(s) 208, 377, 603, 878, 934
FblI GTMKAC 1 cut(s) 822
FokI GGATG 4 cut(s) 474, 496, 743, 1059
FspBI CTAG 3 cut(s) 443, 771, 1102
GlaI GCGC 1 cut(s) 811
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 813
HaeIII GGCC 1 cut(s) 929
HapII CCGG 3 cut(s) 11, 47, 725
HhaI GCGC 1 cut(s) 812
Hin1II CATG 5 cut(s) 212, 381, 607, 882, 938
Hin6I GCGC 1 cut(s) 810
HinP1I GCGC 1 cut(s) 810
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 3 cut(s) 373, 425, 515
HpaII CCGG 3 cut(s) 11, 47, 725
HphI GGTGA 2 cut(s) 778, 950
Hpy166II GTNNAC 1 cut(s) 823
Hpy188I TCNGA 5 cut(s) 292, 430, 520, 661, 1046
Hpy188III TCNNGA 3 cut(s) 11, 478, 696
Hpy8I GTNNAC 1 cut(s) 823
Hpy99I CGWCG 4 cut(s) 107, 329, 672, 897
HpyCH4III ACNGT 3 cut(s) 140, 230, 754
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 3 cut(s) 4, 81, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 6 cut(s) 39, 120, 638, 680, 849, 906
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 5 cut(s) 212, 381, 607, 882, 938
HspAI GCGC 1 cut(s) 810
Kpn2I TCCGGA 1 cut(s) 10
Kzo9I GATC 6 cut(s) 71, 171, 202, 399, 458, 664
LguI GCTCTTC 1 cut(s) 771
LweI GCATC 4 cut(s) 13, 474, 496, 1037
MaeI CTAG 3 cut(s) 443, 771, 1102
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 5 cut(s) 308, 446, 497, 562, 766
MalI GATC 6 cut(s) 73, 173, 204, 401, 460, 666
MboI GATC 6 cut(s) 71, 171, 202, 399, 458, 664
MboII GAAGA 6 cut(s) 96, 279, 305, 713, 788, 952
MflI RGATCY 3 cut(s) 202, 399, 458
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 6 cut(s) 213, 257, 283, 412, 827, 1053
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 9 cut(s) 7, 285, 472, 474, 475, 729, 850, 966, 997
Mph1103I ATGCAT 2 cut(s) 6, 489
MroI TCCGGA 1 cut(s) 10
MseI TTAA 2 cut(s) 216, 735
MspI CCGG 3 cut(s) 11, 47, 725
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 239
NcoI CCATGG 1 cut(s) 208
NdeII GATC 6 cut(s) 71, 171, 202, 399, 458, 664
NlaIII CATG 5 cut(s) 212, 381, 607, 882, 938
NlaIV GGNNCC 3 cut(s) 45, 232, 401
NmeAIII GCCGAG 1 cut(s) 905
NmuCI GTSAC 2 cut(s) 562, 766
NsiI ATGCAT 2 cut(s) 6, 489
PciSI GCTCTTC 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 2 cut(s) 373, 425
Pfl23II CGTACG 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 24
Ple19I CGATCG 2 cut(s) 74, 667
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Ppu21I YACGTR 1 cut(s) 308
PshAI GACNNNNGTC 1 cut(s) 666
Psp6I CCWGG 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 24
PspLI CGTACG 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 45, 232, 401
PspPI GGNCC 3 cut(s) 22, 140, 882
PsuI RGATCY 3 cut(s) 202, 399, 458
PvuI CGATCG 2 cut(s) 74, 667
RsaI GTAC 2 cut(s) 137, 346
RsaNI GTAC 2 cut(s) 136, 345
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 2 cut(s) 216, 735
Sau3AI GATC 6 cut(s) 71, 171, 202, 399, 458, 664
Sau96I GGNCC 3 cut(s) 22, 140, 882
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 235
SetI ASST 7 cut(s) 45, 116, 249, 256, 310, 448, 1099
SfaNI GCATC 4 cut(s) 13, 474, 496, 1037
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 3 cut(s) 22, 140, 882
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
SnaBI TACGTA 1 cut(s) 308
Sse9I AATT 6 cut(s) 213, 257, 283, 412, 827, 1053
SsiI CCGC 1 cut(s) 728
SspMI CTAG 3 cut(s) 443, 771, 1102
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 3 cut(s) 143, 208, 442
TaaI ACNGT 3 cut(s) 140, 230, 754
TaiI ACGT 1 cut(s) 310
TaqI TCGA 4 cut(s) 70, 74, 105, 174
TasI AATT 6 cut(s) 213, 257, 283, 412, 827, 1053
TfiI GAWTC 2 cut(s) 373, 425
Tru1I TTAA 2 cut(s) 216, 735
Tru9I TTAA 2 cut(s) 216, 735
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 2 cut(s) 562, 766
Tsp45I GTSAC 2 cut(s) 562, 766
TspDTI ATGAA 1 cut(s) 620
TspGWI ACGGA 1 cut(s) 881
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 3 cut(s) 22, 140, 882
XapI RAATTY 1 cut(s) 412
XmaJI CCTAGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 3 cut(s) 443, 771, 1102
Zsp2I ATGCAT 2 cut(s) 6, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.