AT3G18980

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6546200 .. 6548092
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18980.1

Sequence Viewer

Length: 1248 bp
ATGACGATACCGGATCTCTGTAACGATTTGGTCGATGAGATACTCTGTCGCGTTCCGGCGAGGAATCTGAAACGGTTACGATCTACCAGCAAACGATGGAACCGTTTATTCAAAGATGATAGGAGATTCGCAAGAGAGCACATGCATAAAGCCCCAAAGGAGTATCTACCTCTCATGTTGACAAGCGAGTACAGGATCTGTCCGGTGAGCATCAATCTCCAAGGAGATGTTCCTTCTGTAGTGTTAAAGAGAGAGCTTAGCCTACCAGATCCGGATTATTCACATCAATTCGATATAGGTCGAGTCTTTCACTGCGACGGCTTATTGGTATGCAACCACGTAGGCAAGAATCCCCGATACGGATCTAAAATCGTGGTTTGGAACCCGCTGACTGGTCAAACCAGGTGGATCGAAGCCGGCTATCGTTGGAAGGAATACGAAGTCAGATTTGTTCTCGGATACTGCTACCAGCAAGACGAGAACAATTCCTGCAGTAAAAAAATCTACAAAATTTTGTGTTTTTATCCTAATGGCCAAGATACAGAAATCTACGAGCTTAACTACTCTGATAGGTGGACAAGGACGATTCCTGATGGTGATCTCACTCCAGGCTGGACCTTGATATACTCAGAGCAGACCGTGTCTATGAATGGAAATCTTTACTTGTTTGCTTCGGAGAAATCAAAACCCCATCTTGGCGTGTCCTTGCTCAGATTTGATTTCTCAACAGAGAAATCATCTCTATGTGTGACTCTTCCCTATCAGCGTCCAAGGTATGAAATTTTGAGTATTTCCGCCGTTAGAGGAGGAGAGAATCTTTCTCTGTTGTTGCAGCTCGATTTTGAATCTAAGACTGAGATATGGGTGACGAATAAGATTGATGACACCACCACCAAAGGAGCAGCAGTCTCTTGGACCAAGGTCCTAGCATTTGATTTAAGCCCTGATCTTCAATTATTTTCGGAGGAGGTAAATTTTTTGCTTGACGAGGATAAGAAAGTCGCTGTGTGTTGTGAGAGATGGTTGGAACCGCAAGAGCACCACAGGTACCAGTGCAGGAGAGAGTACAAGATCACCGACAAGATATACATTCTCGGGGAGGATAATAAAGTCGATGAAGTAGGTTCTGGAGAGGGAGAGGCTACAGATTCACTTGAAGGAATTTCGCAAGTTATTCTCAATTACGCTCCAAGTTTGGTCCAAATCGAGCAAGCCGGAGGAGGCAAAACAAAAAGAGGTGACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

415

Amino Acids

47.89

Weight (kDa)

5.76

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 43 3.8e-08 F-box domain
FBA_1 PF07734 59 - 402 4.3e-80 F-box associated beta propeller domain
FBA_3 PF08268 106 - 258 4.8e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1047
AccB1I GGYRCC 1 cut(s) 1047
AccII CGCG 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 3 cut(s) 386, 795, 1031
AclWI GGATC 5 cut(s) 21, 203, 263, 370, 416
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 4 cut(s) 510, 780, 973, 1161
AfaI GTAC 3 cut(s) 191, 1049, 1067
AfiI CCNNNNNNNGG 3 cut(s) 359, 392, 695
AgsI TTSAA 4 cut(s) 112, 845, 953, 1157
AjnI CCWGG 2 cut(s) 401, 607
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 3 cut(s) 256, 556, 835
AluI AGCT 3 cut(s) 256, 556, 835
Alw21I GWGCWC 2 cut(s) 141, 1041
Alw26I GTCTC 1 cut(s) 913
AlwI GGATC 5 cut(s) 21, 203, 263, 370, 416
AlwNI CAGNNNCTG 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 1094
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 2 cut(s) 832, 902
ApoI RAATTY 4 cut(s) 510, 780, 973, 1161
Asp718I GGTACC 1 cut(s) 1047
AspS9I GGNCC 4 cut(s) 615, 915, 922, 1198
AsuHPI GGTGA 4 cut(s) 217, 608, 877, 1066
AvaI CYCGRG 1 cut(s) 1094
AvaII GGWCC 4 cut(s) 615, 915, 922, 1198
BalI TGGCCA 1 cut(s) 534
BanI GGYRCC 1 cut(s) 1047
Bbv12I GWGCWC 2 cut(s) 141, 1041
BbvI GCAGC 2 cut(s) 844, 914
BccI CCATC 4 cut(s) 90, 587, 699, 1014
BceAI ACGGC 2 cut(s) 334, 782
BciT130I CCWGG 2 cut(s) 403, 609
BciVI GTATCC 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 913
BfaI CTAG 1 cut(s) 926
BfmI CTRYAG 3 cut(s) 237, 490, 1143
BfuI GTATCC 1 cut(s) 452
BisI GCNGC 2 cut(s) 833, 903
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 2 cut(s) 834, 904
Bme1390I CCNGG 2 cut(s) 403, 609
Bme18I GGWCC 4 cut(s) 615, 915, 922, 1198
BmeT110I CYCGRG 1 cut(s) 1094
BmgT120I GGNCC 4 cut(s) 615, 915, 922, 1198
BmiI GGNNCC 4 cut(s) 101, 383, 1029, 1049
BmrFI CCNGG 2 cut(s) 403, 609
BmsI GCATC 1 cut(s) 219
BoxI GACNNNNGTC 1 cut(s) 920
BpmI CTGGAG 2 cut(s) 591, 1149
Bpu1102I GCTNAGC 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 340
BsaBI GATNNNNATC 2 cut(s) 361, 597
BsaJI CCNNGG 3 cut(s) 220, 770, 918
BsaWI WCCGGW 3 cut(s) 10, 202, 271
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 392, 695
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 2 cut(s) 397, 1051
Bse8I GATNNNNATC 2 cut(s) 361, 597
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 2 cut(s) 403, 609
BseDI CCNNGG 3 cut(s) 220, 770, 918
BseJI GATNNNNATC 2 cut(s) 361, 597
BseLI CCNNNNNNNGG 3 cut(s) 359, 392, 695
BseMII CTCAG 3 cut(s) 642, 724, 846
BseNI ACTGG 2 cut(s) 397, 1051
BseRI GAGGAG 4 cut(s) 819, 822, 980, 1233
BseXI GCAGC 2 cut(s) 844, 914
BsgI GTGCAG 1 cut(s) 1075
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 534
BshNI GGYRCC 1 cut(s) 1047
BsiHKAI GWGCWC 2 cut(s) 141, 1041
BsiHKCI CYCGRG 1 cut(s) 1094
BsiSI CCGG 6 cut(s) 11, 56, 203, 272, 417, 1215
BslI CCNNNNNNNGG 3 cut(s) 359, 392, 695
BsmAI GTCTC 1 cut(s) 913
BsnI GGCC 1 cut(s) 534
BsoBI CYCGRG 1 cut(s) 1094
Bsp1286I GDGCHC 2 cut(s) 141, 1041
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
Bsp1720I GCTNAGC 1 cut(s) 257
BspACI CCGC 3 cut(s) 386, 795, 1031
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 3 cut(s) 641, 723, 847
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 4 cut(s) 101, 383, 1029, 1049
BspMAI CTGCAG 1 cut(s) 494
BspPI GGATC 5 cut(s) 21, 203, 263, 370, 416
BspT107I GGYRCC 1 cut(s) 1047
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 2 cut(s) 397, 1051
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 3 cut(s) 220, 770, 918
BssMI GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
BssT1I CCWWGG 3 cut(s) 220, 770, 918
Bst2UI CCWGG 2 cut(s) 403, 609
Bst4CI ACNGT 3 cut(s) 75, 104, 640
Bst6I CTCTTC 1 cut(s) 759
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 418, 1212
BstDEI CTNAG 5 cut(s) 257, 628, 710, 849, 855
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 9 cut(s) 16, 83, 198, 271, 365, 411, 601, 949, 1074
BstMAI GTCTC 1 cut(s) 913
BstMBI GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
BstNI CCWGG 2 cut(s) 403, 609
BstNSI RCATGY 1 cut(s) 145
BstPAI GACNNNNGTC 1 cut(s) 920
BstSCI CCNGG 2 cut(s) 401, 607
BstSFI CTRYAG 3 cut(s) 237, 490, 1143
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 844, 914
BstX2I RGATCY 4 cut(s) 13, 195, 268, 362
BstYI RGATCY 4 cut(s) 13, 195, 268, 362
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 310, 1058
Cac8I GCNNGC 2 cut(s) 418, 1212
CaiI CAGNNNCTG 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 4 cut(s) 615, 915, 922, 1198
CseI GACGC 1 cut(s) 755
CsiI ACCWGGT 1 cut(s) 401
Csp6I GTAC 3 cut(s) 190, 1048, 1066
CspCI CAANNNNNGTGG 2 cut(s) 386, 421
CviAII CATG 2 cut(s) 142, 175
CviQI GTAC 3 cut(s) 190, 1048, 1066
DdeI CTNAG 5 cut(s) 257, 628, 710, 849, 855
DpnI GATC 9 cut(s) 15, 82, 197, 270, 364, 410, 600, 948, 1073
DpnII GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 759
EarI CTCTTC 1 cut(s) 759
EciI GGCGGA 1 cut(s) 784
Eco130I CCWWGG 3 cut(s) 220, 770, 918
Eco47I GGWCC 4 cut(s) 615, 915, 922, 1198
Eco88I CYCGRG 1 cut(s) 1094
EcoO109I RGGNCCY 1 cut(s) 922
EcoRII CCWGG 2 cut(s) 401, 607
EcoT14I CCWWGG 3 cut(s) 220, 770, 918
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 3 cut(s) 220, 770, 918
FaeI CATG 2 cut(s) 145, 178
FatI CATG 2 cut(s) 141, 174
FauI CCCGC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 833, 903
Fsp4HI GCNGC 2 cut(s) 833, 903
FspBI CTAG 1 cut(s) 926
GluI GCNGC 2 cut(s) 833, 903
GsuI CTGGAG 2 cut(s) 591, 1149
HaeIII GGCC 1 cut(s) 534
HapII CCGG 6 cut(s) 11, 56, 203, 272, 417, 1215
HgaI GACGC 1 cut(s) 755
Hin1II CATG 2 cut(s) 145, 178
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 9 cut(s) 64, 126, 303, 349, 586, 751, 814, 845, 1148
HpaII CCGG 6 cut(s) 11, 56, 203, 272, 417, 1215
HphI GGTGA 4 cut(s) 217, 608, 877, 1066
Hpy166II GTNNAC 2 cut(s) 180, 576
Hpy188I TCNGA 8 cut(s) 69, 446, 458, 568, 631, 676, 713, 964
Hpy188III TCNNGA 3 cut(s) 272, 590, 1128
Hpy8I GTNNAC 2 cut(s) 180, 576
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 243, 424, 1151
HpyCH4III ACNGT 3 cut(s) 75, 104, 640
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 5 cut(s) 145, 333, 492, 832, 1056
HpyF3I CTNAG 5 cut(s) 257, 628, 710, 849, 855
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 2 cut(s) 145, 178
Kpn2I TCCGGA 1 cut(s) 271
KpnI GGTACC 1 cut(s) 1051
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Kzo9I GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
LmnI GCTCC 2 cut(s) 899, 1192
Lsp1109I GCAGC 2 cut(s) 844, 914
LweI GCATC 1 cut(s) 219
MabI ACCWGGT 1 cut(s) 401
MaeI CTAG 1 cut(s) 926
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 5 cut(s) 20, 75, 748, 865, 1238
MalI GATC 9 cut(s) 15, 82, 197, 270, 364, 410, 600, 948, 1073
MboI GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
MboII GAAGA 2 cut(s) 746, 941
MflI RGATCY 4 cut(s) 13, 195, 268, 362
MhlI GDGCHC 2 cut(s) 141, 1041
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 8 cut(s) 287, 484, 510, 780, 953, 973, 1161, 1180
MluNI TGGCCA 1 cut(s) 534
MlyI GAGTC 2 cut(s) 312, 745
MmeI TCCRAC 2 cut(s) 407, 1005
Mox20I TGGCCA 1 cut(s) 534
Mph1103I ATGCAT 1 cut(s) 147
MroI TCCGGA 1 cut(s) 271
MroNI GCCGGC 1 cut(s) 416
MscI TGGCCA 1 cut(s) 534
MseI TTAA 3 cut(s) 245, 558, 938
MslI CAYNNNNRTG 1 cut(s) 742
Msp20I TGGCCA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 6 cut(s) 11, 56, 203, 272, 417, 1215
MspR9I CCNGG 2 cut(s) 403, 609
MvaI CCWGG 2 cut(s) 403, 609
MvnI CGCG 1 cut(s) 51
NaeI GCCGGC 1 cut(s) 418
NdeII GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
NgoMIV GCCGGC 1 cut(s) 416
NlaIII CATG 2 cut(s) 145, 178
NlaIV GGNNCC 4 cut(s) 101, 383, 1029, 1049
NmuCI GTSAC 3 cut(s) 748, 865, 1238
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 1 cut(s) 145
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 100
PdiI GCCGGC 1 cut(s) 418
PfeI GAWTC 7 cut(s) 64, 126, 349, 586, 814, 845, 1148
PflFI GACNNNGTC 1 cut(s) 640
PkrI GCNGC 2 cut(s) 834, 904
PleI GAGTC 2 cut(s) 311, 745
PpsI GAGTC 2 cut(s) 311, 745
Ppu21I YACGTR 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 922
PshAI GACNNNNGTC 1 cut(s) 920
Psp5II RGGWCCY 1 cut(s) 922
Psp6I CCWGG 2 cut(s) 401, 607
PspGI CCWGG 2 cut(s) 401, 607
PspN4I GGNNCC 4 cut(s) 101, 383, 1029, 1049
PspPI GGNCC 4 cut(s) 615, 915, 922, 1198
PspPPI RGGWCCY 1 cut(s) 922
PstI CTGCAG 1 cut(s) 494
PstNI CAGNNNCTG 1 cut(s) 198
PsuI RGATCY 4 cut(s) 13, 195, 268, 362
PsyI GACNNNGTC 1 cut(s) 640
RsaI GTAC 3 cut(s) 191, 1049, 1067
RsaNI GTAC 3 cut(s) 190, 1048, 1066
RseI CAYNNNNRTG 1 cut(s) 742
SaqAI TTAA 3 cut(s) 245, 558, 938
SatI GCNGC 2 cut(s) 833, 903
Sau3AI GATC 9 cut(s) 13, 80, 195, 268, 362, 408, 598, 946, 1071
Sau96I GGNCC 4 cut(s) 615, 915, 922, 1198
SchI GAGTC 2 cut(s) 312, 745
ScrFI CCNGG 2 cut(s) 403, 609
SduI GDGCHC 2 cut(s) 141, 1041
SexAI ACCWGGT 1 cut(s) 401
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 3 cut(s) 237, 490, 1143
SinI GGWCC 4 cut(s) 615, 915, 922, 1198
SmiMI CAYNNNNRTG 1 cut(s) 742
Sse9I AATT 8 cut(s) 287, 484, 510, 780, 953, 973, 1161, 1180
SsiI CCGC 3 cut(s) 386, 795, 1031
SspMI CTAG 1 cut(s) 926
StyD4I CCNGG 2 cut(s) 401, 607
StyI CCWWGG 3 cut(s) 220, 770, 918
TaaI ACNGT 3 cut(s) 75, 104, 640
TaiI ACGT 1 cut(s) 342
TaqI TCGA 7 cut(s) 33, 291, 301, 411, 837, 1113, 1206
TasI AATT 8 cut(s) 287, 484, 510, 780, 953, 973, 1161, 1180
TatI WGTACW 2 cut(s) 189, 1065
TfiI GAWTC 7 cut(s) 64, 126, 349, 586, 814, 845, 1148
Tru1I TTAA 3 cut(s) 245, 558, 938
Tru9I TTAA 3 cut(s) 245, 558, 938
TscAI CASTG 2 cut(s) 317, 1058
TseFI GTSAC 3 cut(s) 748, 865, 1238
TseI GCWGC 2 cut(s) 832, 902
Tsp45I GTSAC 3 cut(s) 748, 865, 1238
TspDTI ATGAA 3 cut(s) 662, 792, 1131
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 317, 1058
Tth111I GACNNNGTC 1 cut(s) 640
VpaK11BI GGWCC 4 cut(s) 615, 915, 922, 1198
XapI RAATTY 4 cut(s) 510, 780, 973, 1161
XceI RCATGY 1 cut(s) 145
XspI CTAG 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.