AT3G16555

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
5633426 .. 5634542
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16555.1

Sequence Viewer

Length: 1050 bp
ATGGTTCTGCTTCCATGGGAGCTGGAGGAAGATATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCAATTCAGATCGGTTTGCAAACGATGGAATGCTCTTTTTGATGTTAAAAGTTTCAACAAGGACCAGTTCGCTCGTGCTCGTCCTCAGTTCATCTTCATTACCGATTCCAAGATTTATTCGATAGAGATCATCGGTCTCGACGGCGTTGATCCAACGATTAAGTTACATGTGCTAGACTCCTCTGGTATCCCTTACCGTGAATGGAAATTTGCTTACTTAACCATCACTGCTTGCGATGGCCGATGGATTAAATGGATCGAGTACGAGAATAAAGGTTTCAATGTATGTGGCGTAGGATACGATAATACTAGGCCTGAGAAGGTTTACAAAATCTTGGAGTATTTAGAGTGTCGCCGTGAAGAGAGCTCGAACGCATGCTACCAGAGAGTTGCGATCTACGAGTGTGCCTCTCATGCGTTCAAGTTTATTGATACTTCTAACAAGGTCTGGTTCATAAGCGATGTTCAACGATACAGTGTGTGCTTGAACGGAAATCTCTATTGGCTTTCTTTTGATGACTTTCGCATCCTATGCTTTGATTTCTCGAGGGAGATAGTCAAACCCTTTTGTCTCCTTCCGTGTCGGAAGTTTGATAAATGCGATTTACTTGCCCTCCAAGTTTTCAAGGGAGATAGGTTATCCTTGTTAAATCAATGTTGTAAGACAAGGACGATTGAGATTTGGGTTACGAAGAAGAAGATTGATTCTAGTAACAACAATGGATCAGACGAAGTTGTGTGGATTAGCTTGTTGACTTTGCCACCAAATAACTTGCCAAACTTATTTATTGTGTGTTATGGCATTAGTTACTTCATCTATGACAAGACCACCTTAATCATTTATTGTGAAGACGAGAACACTTCAGCGGCTTGCATCTATATCATCAGGGGGGATTTGTTCAAGAAGTTTGAAATTGATTCCTCTGCTTTCTTTTGTTATCACTGTGTTTATGCTCCCAATTTTATCCCTCTTCCTTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

349

Amino Acids

40.89

Weight (kDa)

6.8

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 8.1e-09 F-box domain
F-box-like PF12937 4 - 35 9e-07 F-box-like
FBA_1 PF07734 105 - 345 1.4e-56 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 932
AclWI GGATC 3 cut(s) 209, 329, 796
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 9 cut(s) 68, 121, 346, 487, 533, 553, 691, 967, 977
AjuI GAANNNNNNNTTGG 2 cut(s) 550, 582
AluBI AGCT 3 cut(s) 22, 432, 813
AluI AGCT 3 cut(s) 22, 432, 813
Alw21I GWGCWC 2 cut(s) 145, 434
Alw26I GTCTC 3 cut(s) 45, 206, 641
AlwI GGATC 3 cut(s) 209, 329, 796
Ama87I CYCGRG 1 cut(s) 610
AoxI GGCC 2 cut(s) 304, 377
ApoI RAATTY 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 610
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 434
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 921
Bbv12I GWGCWC 2 cut(s) 145, 434
BccI CCATC 4 cut(s) 84, 296, 296, 303
BceAI ACGGC 2 cut(s) 223, 405
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BciVI GTATCC 2 cut(s) 263, 356
BcoDI GTCTC 3 cut(s) 45, 206, 641
BfaI CTAG 3 cut(s) 239, 375, 774
BfuI GTATCC 2 cut(s) 263, 356
BisI GCNGC 1 cut(s) 933
BlsI GCNGC 1 cut(s) 934
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 610
BmgT120I GGNCC 1 cut(s) 127
BmsI GCATC 2 cut(s) 600, 948
BpiI GAAGAC 1 cut(s) 921
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bse1I ACTGG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 591
BseJI GATNNNNATC 1 cut(s) 191
BseMII CTCAG 2 cut(s) 164, 372
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 235
BshFI GGCC 2 cut(s) 306, 379
BsiHKAI GWGCWC 2 cut(s) 145, 434
BsiHKCI CYCGRG 1 cut(s) 610
BsmAI GTCTC 3 cut(s) 45, 206, 641
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 2 cut(s) 306, 379
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 610
Bsp1286I GDGCHC 2 cut(s) 145, 434
Bsp143I GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 1 cut(s) 932
BspANI GGCC 2 cut(s) 306, 379
BspCNI CTCAG 2 cut(s) 163, 373
BspPI GGATC 3 cut(s) 209, 329, 796
BspTNI GGTCTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 39, 263, 542, 1010
Bst6I CTCTTC 2 cut(s) 420, 1041
BstAPI GCANNNNNTGC 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 298, 442, 937
BstDEI CTNAG 2 cut(s) 150, 381
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 591
BstKTI GATC 7 cut(s) 59, 77, 195, 217, 324, 462, 791
BstMAI GTCTC 3 cut(s) 45, 206, 641
BstMBI GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
BstMWI GCNNNNNNNGC 2 cut(s) 479, 597
BstNSI RCATGY 2 cut(s) 236, 444
BstV2I GAAGAC 1 cut(s) 921
BsuI GTATCC 2 cut(s) 263, 356
BsuRI GGCC 2 cut(s) 306, 379
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 2 cut(s) 315, 540
BtsCI GGATG 1 cut(s) 591
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 291, 547, 1006
Cac8I GCNNGC 3 cut(s) 298, 442, 937
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 328
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 4 cut(s) 15, 233, 441, 479
CviJI RGCY 8 cut(s) 22, 46, 306, 379, 432, 571, 813, 935
CviKI_1 RGCY 8 cut(s) 22, 46, 306, 379, 432, 571, 813, 935
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 150, 381
DpnI GATC 7 cut(s) 58, 76, 194, 216, 323, 461, 790
DpnII GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 420, 1041
EarI CTCTTC 2 cut(s) 420, 1041
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 434
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 610
EcoICRI GAGCTC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 4 cut(s) 18, 236, 444, 482
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FatI CATG 4 cut(s) 14, 232, 440, 478
Fnu4HI GCNGC 1 cut(s) 933
FokI GGATG 1 cut(s) 578
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 933
FspBI CTAG 3 cut(s) 239, 375, 774
GluI GCNGC 1 cut(s) 933
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 2 cut(s) 306, 379
Hin1II CATG 4 cut(s) 18, 236, 444, 482
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HinfI GANTC 4 cut(s) 170, 242, 770, 983
Hpy166II GTNNAC 2 cut(s) 391, 819
Hpy188I TCNGA 3 cut(s) 74, 651, 793
Hpy188III TCNNGA 3 cut(s) 203, 610, 967
Hpy8I GTNNAC 2 cut(s) 391, 819
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 379, 650
HpyCH4III ACNGT 4 cut(s) 39, 263, 542, 1010
HpyCH4V TGCA 2 cut(s) 84, 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 597
HpyF3I CTNAG 2 cut(s) 150, 381
Hsp92II CATG 4 cut(s) 18, 236, 444, 482
Kzo9I GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
LmnI GCTCC 2 cut(s) 19, 1024
LpnPI CCDG 7 cut(s) 8, 143, 234, 393, 461, 499, 937
LweI GCATC 2 cut(s) 600, 948
MaeI CTAG 3 cut(s) 239, 375, 774
MaeIII GTNAC 4 cut(s) 228, 751, 776, 872
MalI GATC 7 cut(s) 58, 76, 194, 216, 323, 461, 790
MboI GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
MboII GAAGA 8 cut(s) 41, 151, 437, 769, 772, 775, 926, 1028
MhlI GDGCHC 2 cut(s) 145, 434
MluCI AATT 4 cut(s) 68, 272, 978, 1024
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 242, 629
MnlI CCTC 9 cut(s) 19, 63, 159, 256, 484, 606, 689, 997, 1044
MseI TTAA 7 cut(s) 111, 225, 284, 315, 713, 899, 1043
MspA1I CMGCKG 1 cut(s) 932
Mva1269I GAATGC 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 479, 597
NcoI CCATGG 1 cut(s) 14
NdeII GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
NlaIII CATG 4 cut(s) 18, 236, 444, 482
NmeAIII GCCGAG 1 cut(s) 22
NspI RCATGY 2 cut(s) 236, 444
PaeI GCATGC 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 610
PceI AGGCCT 1 cut(s) 379
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 170, 770, 983
PkrI GCNGC 1 cut(s) 934
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PscI ACATGT 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 434
PspPI GGNCC 1 cut(s) 127
PsrI GAACNNNNNNTAC 2 cut(s) 428, 460
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 7 cut(s) 111, 225, 284, 315, 713, 899, 1043
SatI GCNGC 1 cut(s) 933
Sau3AI GATC 7 cut(s) 56, 74, 192, 214, 321, 459, 788
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 2 cut(s) 145, 434
SetI ASST 9 cut(s) 24, 55, 343, 390, 434, 513, 704, 815, 899
SfaNI GCATC 2 cut(s) 600, 948
Sfr274I CTCGAG 1 cut(s) 610
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 610
SmlI CTYRAG 1 cut(s) 610
SmoI CTYRAG 1 cut(s) 610
SphI GCATGC 1 cut(s) 444
Sse9I AATT 4 cut(s) 68, 272, 978, 1024
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 932
SspMI CTAG 3 cut(s) 239, 375, 774
SstI GAGCTC 1 cut(s) 434
StuI AGGCCT 1 cut(s) 379
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 4 cut(s) 39, 263, 542, 1010
TaqI TCGA 6 cut(s) 55, 185, 204, 324, 434, 611
TaqII GACCGA 1 cut(s) 188
TasI AATT 4 cut(s) 68, 272, 978, 1024
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 3 cut(s) 170, 770, 983
Tru1I TTAA 7 cut(s) 111, 225, 284, 315, 713, 899, 1043
Tru9I TTAA 7 cut(s) 111, 225, 284, 315, 713, 899, 1043
TscAI CASTG 3 cut(s) 298, 547, 1013
TspDTI ATGAA 4 cut(s) 145, 151, 508, 868
TspGWI ACGGA 2 cut(s) 570, 633
TspRI CASTG 3 cut(s) 298, 547, 1013
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 272
XceI RCATGY 2 cut(s) 236, 444
XhoI CTCGAG 1 cut(s) 610
XspI CTAG 3 cut(s) 239, 375, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.