AT1G62270
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
23004499 .. 23005650
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62270.1

Sequence Viewer

Length: 1152 bp
ATGACGACGTTAAAAACTTCGTCCTTCTCCAGTCTTCCCTGGGATTTAGTAGAGGATATACTCGCTAGGGTTCCGGCTACGTCTCTAAAACGATTACGATCTACTTGCAAACAATGGAACTTTTTATTCAATGATCAGATATTCACCAAGATGCACTTTGATAAAGCAGAAAAGCAGTTTCTGGTTCTCATATTGCGGTTGTATACGGTTTGTTCAATGAGCCTTGATCTGCGTGGACTTCACGATAATATTGATCCATCTATAGAGGTTAAAGGTGAACTTAGCCTAATTGATCCACATTGTAGTTCAAGGAAAACTTTCGTAAGTAAAGTCTTTCACTGCAACGGCTTATTGTTATGCACAACCATGACCGGACTTGTGGTTTGGAATCCGTGTACGGATCAAACCAGGTGGATCAAAACCGAAGTTCCTCACAATAGAAACGATAAGTACGCTCTCGGATACGGAAACTACAAATCATGCTATAATTACAAAATCATGAAGTTCTTGGATCTTGAATCTTTTGATTTGGAAATCTACGAGGTTAACTCTAATTCATGGAGGGTTCTTGGTACCGTCACTCCAGACTTCACAATACCACTAGATGCCGAAGGTGTGTCTTTAAGGGGGAATTCTTACTGGATCGCTTCACATAAAAGAGAAGAAATAGAGGAAGAAGAAGAAGAAGAAAATGAGTACTTCATCAACGATTTCTTAATAAGTTTTGACTTTACTACAGAAAGATTTGGTCCACGTGTGTCTCTTCCGTTTAAGTGTGAATCTTCTTGGGATACTATCTCCTTATCTTGTGTACGAGAAGAGCGGCTTTCACTGTTTTTTCAGGACGACGGTACATTAAAGATGGAGATATGGATGACAAATAATATCACTGAGACCAAAACCACAACTATGTCTTGGAGCCCTTTTCTTAAGATTGATTTGTACACTTACGGTCATCGGTTTGGGAATGAAGTAAGTTTTTTAGTTGACGAGGAGAATAAAGTGATTGTGTGTTGTGATGAGGAGGAAGATGACATCAACGATACTGTATACATTATTGGAGAGAATGAATATTGGAGAAAAGAGGATATTGTACAAAGATCATATCGGCCACGTATGTTCAGTTATGTTCCTAGTTTGGTTCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006355 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016236 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0019867 GO:0022607 GO:0022613 GO:0022618 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032502 GO:0032543 GO:0034248 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0061668 GO:0061919 GO:0065003 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903108 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04130 ko04310 map04130 map04310
Pfam Domains
Protein Families
mTERF

Protein Analysis

383

Amino Acids

44.94

Weight (kDa)

4.88

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 49 9e-09 F-box domain
FBA_1 PF07734 62 - 383 1.6e-99 F-box associated beta propeller domain
FBA_3 PF08268 99 - 296 4.2e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 1 cut(s) 572
AccBSI CCGCTC 1 cut(s) 823
AccI GTMKAC 2 cut(s) 203, 1050
AciI CCGC 2 cut(s) 196, 823
AclWI GGATC 6 cut(s) 248, 287, 408, 422, 519, 650
AcoI YGGCCR 1 cut(s) 1109
AcsI RAATTY 1 cut(s) 631
AcvI CACGTG 1 cut(s) 755
AfaI GTAC 8 cut(s) 397, 452, 574, 698, 813, 853, 944, 1095
AflII CTTAAG 1 cut(s) 929
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 5 cut(s) 130, 216, 309, 518, 1145
AjnI CCWGG 2 cut(s) 38, 407
Alw26I GTCTC 3 cut(s) 87, 765, 887
AlwI GGATC 6 cut(s) 248, 287, 408, 422, 519, 650
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 1 cut(s) 1109
ApoI RAATTY 1 cut(s) 631
ArsI GACNNNNNNTTYG 2 cut(s) 366, 398
Asp700I GAANNNNTTC 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 2 cut(s) 136, 287
AvaII GGWCC 1 cut(s) 749
BanI GGYRCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 923
BbrPI CACGTG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 26
BccI CCATC 2 cut(s) 265, 856
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 2 cut(s) 40, 409
BciVI GTATCC 2 cut(s) 455, 784
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 87, 765, 887
BfaI CTAG 4 cut(s) 66, 602, 1134, 1150
BfmI CTRYAG 2 cut(s) 261, 735
BfrI CTTAAG 1 cut(s) 929
BfuI GTATCC 2 cut(s) 455, 784
BisI GCNGC 1 cut(s) 824
BlsI GCNGC 1 cut(s) 825
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 2 cut(s) 40, 409
Bme18I GGWCC 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 3 cut(s) 72, 574, 920
BmrFI CCNGG 2 cut(s) 40, 409
BmsI GCATC 2 cut(s) 141, 595
BpiI GAAGAC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 2 cut(s) 13, 567
BsaAI YACGTR 2 cut(s) 755, 1115
BsaBI GATNNNNATC 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 2 cut(s) 38, 39
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bse1I ACTGG 2 cut(s) 30, 644
Bse8I GATNNNNATC 1 cut(s) 97
BseBI CCWGG 2 cut(s) 40, 409
BseDI CCNNGG 2 cut(s) 38, 39
BseGI GGATG 1 cut(s) 879
BseJI GATNNNNATC 1 cut(s) 97
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 2 cut(s) 30, 644
BseRI GAGGAG 2 cut(s) 1007, 1037
BshFI GGCC 1 cut(s) 1111
BshNI GGYRCC 1 cut(s) 572
BsiSI CCGG 2 cut(s) 74, 372
BsmAI GTCTC 3 cut(s) 87, 765, 887
BsmBI CGTCTC 1 cut(s) 87
BsnI GGCC 1 cut(s) 1111
Bso31I GGTCTC 1 cut(s) 887
Bsp1286I GDGCHC 1 cut(s) 923
Bsp1407I TGTACA 2 cut(s) 942, 1093
BspACI CCGC 2 cut(s) 196, 823
BspANI GGCC 1 cut(s) 1111
BspCNI CTCAG 1 cut(s) 883
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 72, 574, 920
BspPI GGATC 6 cut(s) 248, 287, 408, 422, 519, 650
BspQI GCTCTTC 1 cut(s) 813
BspT107I GGYRCC 1 cut(s) 572
BspTI CTTAAG 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 887
BsrBI CCGCTC 1 cut(s) 823
BsrGI TGTACA 2 cut(s) 942, 1093
BsrI ACTGG 2 cut(s) 30, 644
BssECI CCNNGG 2 cut(s) 38, 39
BssNAI GTATAC 2 cut(s) 204, 1051
Bst1107I GTATAC 2 cut(s) 204, 1051
Bst2UI CCWGG 2 cut(s) 40, 409
Bst4CI ACNGT 6 cut(s) 208, 577, 834, 851, 953, 1048
Bst6I CTCTTC 2 cut(s) 768, 813
BstAFI CTTAAG 1 cut(s) 929
BstAUI TGTACA 2 cut(s) 942, 1093
BstBAI YACGTR 2 cut(s) 755, 1115
BstDEI CTNAG 2 cut(s) 281, 891
BstF5I GGATG 1 cut(s) 879
BstMAI GTCTC 3 cut(s) 87, 765, 887
BstNI CCWGG 2 cut(s) 40, 409
BstSCI CCNGG 2 cut(s) 38, 407
BstSFI CTRYAG 2 cut(s) 261, 735
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BstZ17I GTATAC 2 cut(s) 204, 1051
BsuI GTATCC 2 cut(s) 455, 784
BsuRI GGCC 1 cut(s) 1111
BtsCI GGATG 1 cut(s) 879
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 3 cut(s) 337, 830, 888
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 749
CsiI ACCWGGT 1 cut(s) 407
Csp6I GTAC 8 cut(s) 396, 451, 573, 697, 812, 852, 943, 1094
CspCI CAANNNNNGTGG 2 cut(s) 392, 427
CviAII CATG 4 cut(s) 367, 480, 499, 558
CviJI RGCY 7 cut(s) 77, 222, 285, 348, 826, 921, 1111
CviKI_1 RGCY 7 cut(s) 77, 222, 285, 348, 826, 921, 1111
CviQI GTAC 8 cut(s) 396, 451, 573, 697, 812, 852, 943, 1094
DdeI CTNAG 2 cut(s) 281, 891
EaeI YGGCCR 1 cut(s) 1109
Eam1104I CTCTTC 2 cut(s) 768, 813
EarI CTCTTC 2 cut(s) 768, 813
Eco24I GRGCYC 1 cut(s) 923
Eco31I GGTCTC 1 cut(s) 887
Eco47I GGWCC 1 cut(s) 749
Eco72I CACGTG 1 cut(s) 755
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 2 cut(s) 38, 407
EcoT38I GRGCYC 1 cut(s) 923
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 4 cut(s) 370, 483, 502, 561
FalI AAGNNNNNCTT 8 cut(s) 140, 172, 264, 296, 301, 333, 810, 842
FatI CATG 4 cut(s) 366, 479, 498, 557
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 2 cut(s) 203, 1050
Fnu4HI GCNGC 1 cut(s) 824
FokI GGATG 1 cut(s) 886
FriOI GRGCYC 1 cut(s) 923
Fsp4HI GCNGC 1 cut(s) 824
FspBI CTAG 4 cut(s) 66, 602, 1134, 1150
GluI GCNGC 1 cut(s) 824
GsuI CTGGAG 2 cut(s) 13, 567
HaeIII GGCC 1 cut(s) 1111
HapII CCGG 2 cut(s) 74, 372
Hin1II CATG 4 cut(s) 370, 483, 502, 561
HincII GTYRAC 2 cut(s) 547, 988
HindII GTYRAC 2 cut(s) 547, 988
HinfI GANTC 3 cut(s) 388, 518, 779
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 2 cut(s) 74, 372
HphI GGTGA 2 cut(s) 136, 287
Hpy188I TCNGA 2 cut(s) 138, 461
Hpy188III TCNNGA 5 cut(s) 242, 499, 515, 584, 842
Hpy99I CGWCG 2 cut(s) 10, 851
HpyAV CCTTC 2 cut(s) 34, 605
HpyCH4III ACNGT 6 cut(s) 208, 577, 834, 851, 953, 1048
HpyCH4IV ACGT 4 cut(s) 8, 80, 754, 1114
HpyCH4V TGCA 4 cut(s) 108, 154, 342, 360
HpyF3I CTNAG 2 cut(s) 281, 891
HpySE526I ACGT 4 cut(s) 8, 80, 754, 1114
Hsp92II CATG 4 cut(s) 370, 483, 502, 561
KpnI GGTACC 1 cut(s) 576
Ksp22I TGATCA 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 547
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 1 cut(s) 918
LweI GCATC 2 cut(s) 141, 595
MabI ACCWGGT 1 cut(s) 407
MaeI CTAG 4 cut(s) 66, 602, 1134, 1150
MaeII ACGT 4 cut(s) 8, 80, 754, 1114
MaeIII GTNAC 1 cut(s) 577
MbiI CCGCTC 1 cut(s) 823
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 923
MluCI AATT 4 cut(s) 288, 487, 553, 631
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 8 cut(s) 11, 270, 546, 623, 716, 771, 857, 930
MslI CAYNNNNRTG 3 cut(s) 149, 365, 908
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 2 cut(s) 74, 372
MspR9I CCNGG 2 cut(s) 40, 409
MvaI CCWGG 2 cut(s) 40, 409
NlaIII CATG 4 cut(s) 370, 483, 502, 561
NlaIV GGNNCC 3 cut(s) 72, 574, 920
NmuCI GTSAC 1 cut(s) 577
PagI TCATGA 1 cut(s) 498
PasI CCCWGGG 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 813
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 3 cut(s) 388, 518, 779
PkrI GCNGC 1 cut(s) 825
PmaCI CACGTG 1 cut(s) 755
PmlI CACGTG 1 cut(s) 755
Ppu21I YACGTR 2 cut(s) 755, 1115
Psp6I CCWGG 2 cut(s) 38, 407
PspCI CACGTG 1 cut(s) 755
PspGI CCWGG 2 cut(s) 38, 407
PspN4I GGNNCC 3 cut(s) 72, 574, 920
PspPI GGNCC 1 cut(s) 749
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 8 cut(s) 397, 452, 574, 698, 813, 853, 944, 1095
RsaNI GTAC 8 cut(s) 396, 451, 573, 697, 812, 852, 943, 1094
RseI CAYNNNNRTG 3 cut(s) 149, 365, 908
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 8 cut(s) 11, 270, 546, 623, 716, 771, 857, 930
SatI GCNGC 1 cut(s) 824
Sau96I GGNCC 1 cut(s) 749
ScaI AGTACT 1 cut(s) 698
ScrFI CCNGG 2 cut(s) 40, 409
SduI GDGCHC 1 cut(s) 923
SetI ASST 9 cut(s) 11, 83, 270, 277, 413, 546, 616, 757, 1117
SexAI ACCWGGT 1 cut(s) 407
SfaNI GCATC 2 cut(s) 141, 595
SfcI CTRYAG 2 cut(s) 261, 735
SinI GGWCC 1 cut(s) 749
SmiMI CAYNNNNRTG 3 cut(s) 149, 365, 908
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
Sse9I AATT 4 cut(s) 288, 487, 553, 631
SsiI CCGC 2 cut(s) 196, 823
SspI AATATT 2 cut(s) 250, 1073
SspMI CTAG 4 cut(s) 66, 602, 1134, 1150
StyD4I CCNGG 2 cut(s) 38, 407
TaaI ACNGT 6 cut(s) 208, 577, 834, 851, 953, 1048
TaiI ACGT 4 cut(s) 11, 83, 757, 1117
TasI AATT 4 cut(s) 288, 487, 553, 631
TatI WGTACW 3 cut(s) 696, 942, 1093
TauI GCSGC 1 cut(s) 826
TfiI GAWTC 3 cut(s) 388, 518, 779
Tru1I TTAA 8 cut(s) 11, 270, 546, 623, 716, 771, 857, 930
Tru9I TTAA 8 cut(s) 11, 270, 546, 623, 716, 771, 857, 930
TscAI CASTG 3 cut(s) 344, 837, 895
TseFI GTSAC 1 cut(s) 577
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 5 cut(s) 515, 546, 691, 984, 1083
TspGWI ACGGA 4 cut(s) 381, 413, 480, 756
TspRI CASTG 3 cut(s) 344, 837, 895
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 2 cut(s) 203, 1050
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 4 cut(s) 66, 602, 1134, 1150
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.