AT3G19410

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6729585 .. 6730706
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19410.1

Sequence Viewer

Length: 1122 bp
ATGACGATACCCGAGCTGCCAAAGGATTTGATAGAGGAGATACTCTGTTACGTTCCGGCGACATATCTGAAACGATTACGTTCTACTTGCAAAGGATGGAACCGTTTATTCAAAGATGATCGAAGATTCGCCAAAAAGCATTATGACAAAGCCGCAAAGCAGTTTCTACCCCTCATGTCAACCAACGAAGAGCTTTGTGCGATGAGCGTCAATCTCCATGGAACGATACCATCTTTAGAGGTAAAAGATAAGCCTTGGCTATTCGTTTCAGATTCTAAGCATTGTGATATCGAAATATCTCGAATCTTTCACAGTGGCGGCTTGTTGTTATGCTTCTCCCGAGACGGCGAAATTTCAATCATAGTTTGGAACCCGTTAACTAGTGAAACCAGGTTGATTCGAACCCGGAATCGTCGCGATAAAGGACGCAACTTTGTTCTTGGATACTATCAAGAAGACAAAAAAACCTACTACAAAATCTTGAGCTTTTATCTTGATAGCAAAGATTTCGAAATCTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTTGTCCTTGCTATACTCTGATCAATGCGTGTCTTTGAAGGGAAATACATACATGTTTGCTATAGATGACTTAAGTGTATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTGTACCTCTTCCCTATAAAAGTCGTTCTTTTGAAGCTATTAGTCTTTCCGTGGTTAGAGAAGAGAAGCTCTCTGTGTTATTACAGCGAGATAAAAGTTCGAAAACTGAGATATGGGTGACAAATGTGATTGATGAAACCACCACCAAAGTGATGGTGGTGTCGTGGAGCAAGGTCTTATCATTGGATTTGAGCCCTGATCTTAAAATTAGGTATGGAGAAAGTTTCTTGCTGGACGAAGAGAAGAAAGTGATCATGATTTTTAATAACCGGATGGAAGAAGAGAACAAATCCGAAGACAAACTATACATTATTGGGGACGACGATAATAAAGCCACACAAGTATATACAATCCATGGATATGGACCAGCTGTTTTTAACTATTTTCCAAGTTTGGTTCAAATCGAGCAAAGCTCTAGGCAAGAGGAAAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

373

Amino Acids

43.4

Weight (kDa)

5.75

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 43 2.5e-09 F-box domain
F-box-like PF12937 3 - 42 6.5e-06 F-box-like
FBA_1 PF07734 58 - 363 9.9e-84 F-box associated beta propeller domain
FBA_3 PF08268 90 - 270 5.4e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 417
AciI CCGC 2 cut(s) 153, 318
AcsI RAATTY 1 cut(s) 351
AfaI GTAC 1 cut(s) 690
AflII CTTAAG 1 cut(s) 637
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 6 cut(s) 112, 357, 604, 669, 719, 1085
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 2 cut(s) 389, 562
AleI CACNNNNGTG 1 cut(s) 833
AluBI AGCT 7 cut(s) 16, 193, 486, 722, 754, 1055, 1098
AluI AGCT 7 cut(s) 16, 193, 486, 722, 754, 1055, 1098
Alw26I GTCTC 2 cut(s) 336, 668
Ama87I CYCGRG 2 cut(s) 11, 339
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 1049
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 1 cut(s) 814
AsuII TTCGAA 3 cut(s) 400, 510, 785
AvaI CYCGRG 2 cut(s) 11, 339
AvaII GGWCC 1 cut(s) 1049
BanII GRGCYC 1 cut(s) 881
BbsI GAAGAC 2 cut(s) 462, 987
BbvI GCAGC 1 cut(s) 3
BccI CCATC 4 cut(s) 90, 238, 832, 952
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 2 cut(s) 391, 564
BciVI GTATCC 2 cut(s) 437, 655
BclI TGATCA 2 cut(s) 586, 936
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 336, 668
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 381, 1101
BfmI CTRYAG 1 cut(s) 627
BfrI CTTAAG 1 cut(s) 637
BfuI GTATCC 2 cut(s) 437, 655
BisI GCNGC 3 cut(s) 17, 153, 319
BlsI GCNGC 3 cut(s) 18, 154, 320
Bme1390I CCNGG 3 cut(s) 391, 406, 564
Bme18I GGWCC 1 cut(s) 1049
BmeT110I CYCGRG 2 cut(s) 11, 339
BmgT120I GGNCC 1 cut(s) 1049
BmiI GGNNCC 2 cut(s) 101, 371
BmrFI CCNGG 3 cut(s) 391, 406, 564
BpiI GAAGAC 2 cut(s) 462, 987
BplI GAGNNNNNCTC 6 cut(s) 512, 544, 740, 772, 1082, 1114
Bpu14I TTCGAA 3 cut(s) 400, 510, 785
BpuEI CTTGAG 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 406
BsaJI CCNNGG 4 cut(s) 217, 254, 735, 1039
BsaWI WCCGGW 1 cut(s) 954
BseBI CCWGG 2 cut(s) 391, 564
BseDI CCNNGG 4 cut(s) 217, 254, 735, 1039
BseGI GGATG 2 cut(s) 101, 963
BseMII CTCAG 1 cut(s) 783
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 3
Bsh1236I CGCG 1 cut(s) 417
BsiHKCI CYCGRG 2 cut(s) 11, 339
BsiSI CCGG 3 cut(s) 56, 406, 955
BslFI GGGAC 1 cut(s) 1016
BsmAI GTCTC 2 cut(s) 336, 668
BsmBI CGTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 1016
BsoBI CYCGRG 2 cut(s) 11, 339
Bsp119I TTCGAA 3 cut(s) 400, 510, 785
Bsp1286I GDGCHC 1 cut(s) 881
Bsp143I GATC 4 cut(s) 118, 586, 883, 936
Bsp19I CCATGG 2 cut(s) 217, 1039
Bsp68I TCGCGA 1 cut(s) 417
BspACI CCGC 2 cut(s) 153, 318
BspCNI CTCAG 1 cut(s) 784
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 939
BspLI GGNNCC 2 cut(s) 101, 371
BspQI GCTCTTC 1 cut(s) 183
BspT104I TTCGAA 3 cut(s) 400, 510, 785
BspTI CTTAAG 1 cut(s) 637
BssECI CCNNGG 4 cut(s) 217, 254, 735, 1039
BssMI GATC 4 cut(s) 118, 586, 883, 936
BssT1I CCWWGG 3 cut(s) 217, 254, 1039
Bst2UI CCWGG 2 cut(s) 391, 564
Bst4CI ACNGT 2 cut(s) 104, 314
Bst6I CTCTTC 5 cut(s) 183, 699, 741, 918, 960
BstAFI CTTAAG 1 cut(s) 637
BstBI TTCGAA 3 cut(s) 400, 510, 785
BstDEI CTNAG 2 cut(s) 276, 792
BstDSI CCRYGG 3 cut(s) 217, 735, 1039
BstF5I GGATG 2 cut(s) 101, 963
BstFNI CGCG 1 cut(s) 417
BstKTI GATC 4 cut(s) 121, 589, 886, 939
BstMAI GTCTC 2 cut(s) 336, 668
BstMBI GATC 4 cut(s) 118, 586, 883, 936
BstNI CCWGG 2 cut(s) 391, 564
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 3 cut(s) 389, 404, 562
BstSFI CTRYAG 1 cut(s) 627
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 3
BstV2I GAAGAC 2 cut(s) 462, 987
BstXI CCANNNNNNTGG 2 cut(s) 838, 1046
BsuI GTATCC 2 cut(s) 437, 655
BtgI CCRYGG 3 cut(s) 217, 735, 1039
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 2 cut(s) 101, 963
BtsIMutI CAGTG 1 cut(s) 319
BtuMI TCGCGA 1 cut(s) 417
CciI TCATGA 1 cut(s) 939
Cfr13I GGNCC 1 cut(s) 1049
CseI GACGC 2 cut(s) 196, 435
CsiI ACCWGGT 1 cut(s) 389
Csp6I GTAC 1 cut(s) 689
CviAII CATG 6 cut(s) 175, 218, 537, 619, 940, 1040
CviQI GTAC 1 cut(s) 689
DdeI CTNAG 2 cut(s) 276, 792
DpnI GATC 4 cut(s) 120, 588, 885, 938
DpnII GATC 4 cut(s) 118, 586, 883, 936
Eam1104I CTCTTC 5 cut(s) 183, 699, 741, 918, 960
EarI CTCTTC 5 cut(s) 183, 699, 741, 918, 960
Eco130I CCWWGG 3 cut(s) 217, 254, 1039
Eco24I GRGCYC 1 cut(s) 881
Eco32I GATATC 2 cut(s) 289, 556
Eco47I GGWCC 1 cut(s) 1049
Eco88I CYCGRG 2 cut(s) 11, 339
EcoRII CCWGG 2 cut(s) 389, 562
EcoRV GATATC 2 cut(s) 289, 556
EcoT14I CCWWGG 3 cut(s) 217, 254, 1039
EcoT38I GRGCYC 1 cut(s) 881
ErhI CCWWGG 3 cut(s) 217, 254, 1039
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 6 cut(s) 178, 221, 540, 622, 943, 1043
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 1 cut(s) 1016
FatI CATG 6 cut(s) 174, 217, 536, 618, 939, 1039
FbaI TGATCA 2 cut(s) 586, 936
Fnu4HI GCNGC 3 cut(s) 17, 153, 319
FokI GGATG 2 cut(s) 108, 970
FriOI GRGCYC 1 cut(s) 881
Fsp4HI GCNGC 3 cut(s) 17, 153, 319
FspBI CTAG 2 cut(s) 381, 1101
GluI GCNGC 3 cut(s) 17, 153, 319
HapII CCGG 3 cut(s) 56, 406, 955
HgaI GACGC 2 cut(s) 196, 435
Hin1II CATG 6 cut(s) 178, 221, 540, 622, 943, 1043
HincII GTYRAC 2 cut(s) 180, 378
HindII GTYRAC 2 cut(s) 180, 378
HinfI GANTC 6 cut(s) 126, 272, 303, 397, 409, 533
HpaI GTTAAC 1 cut(s) 378
HpaII CCGG 3 cut(s) 56, 406, 955
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 2 cut(s) 180, 378
Hpy188I TCNGA 5 cut(s) 69, 271, 532, 586, 979
Hpy188III TCNNGA 7 cut(s) 300, 339, 416, 452, 481, 494, 940
Hpy8I GTNNAC 2 cut(s) 180, 378
Hpy99I CGWCG 2 cut(s) 417, 1010
HpyAV CCTTC 1 cut(s) 598
HpyCH4III ACNGT 2 cut(s) 104, 314
HpyCH4IV ACGT 2 cut(s) 51, 79
HpyCH4V TGCA 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 276, 792
HpySE526I ACGT 2 cut(s) 51, 79
Hsp92II CATG 6 cut(s) 178, 221, 540, 622, 943, 1043
Ksp22I TGATCA 2 cut(s) 586, 936
KspAI GTTAAC 1 cut(s) 378
Kzo9I GATC 4 cut(s) 118, 586, 883, 936
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 852
Lsp1109I GCAGC 1 cut(s) 3
MabI ACCWGGT 1 cut(s) 389
MaeI CTAG 2 cut(s) 381, 1101
MaeII ACGT 2 cut(s) 51, 79
MaeIII GTNAC 2 cut(s) 47, 802
MalI GATC 4 cut(s) 120, 588, 885, 938
MboI GATC 4 cut(s) 118, 586, 883, 936
MhlI GDGCHC 1 cut(s) 881
MluCI AATT 2 cut(s) 351, 891
MnlI CCTC 6 cut(s) 28, 182, 232, 534, 702, 1102
MseI TTAA 6 cut(s) 377, 525, 638, 888, 948, 1062
MslI CAYNNNNRTG 2 cut(s) 833, 1044
MspA1I CMGCKG 1 cut(s) 1055
MspCI CTTAAG 1 cut(s) 637
MspI CCGG 3 cut(s) 56, 406, 955
MspR9I CCNGG 3 cut(s) 391, 406, 564
MvaI CCWGG 2 cut(s) 391, 564
MvnI CGCG 1 cut(s) 417
NciI CCSGG 1 cut(s) 406
NcoI CCATGG 2 cut(s) 217, 1039
NdeII GATC 4 cut(s) 118, 586, 883, 936
NlaIII CATG 6 cut(s) 178, 221, 540, 622, 943, 1043
NlaIV GGNNCC 2 cut(s) 101, 371
NmuCI GTSAC 1 cut(s) 802
NruI TCGCGA 1 cut(s) 417
NspI RCATGY 1 cut(s) 622
NspV TTCGAA 3 cut(s) 400, 510, 785
OliI CACNNNNGTG 1 cut(s) 833
PagI TCATGA 1 cut(s) 939
PciI ACATGT 1 cut(s) 618
PciSI GCTCTTC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 6 cut(s) 126, 272, 303, 397, 409, 533
PkrI GCNGC 3 cut(s) 18, 154, 320
PscI ACATGT 1 cut(s) 618
Psp6I CCWGG 2 cut(s) 389, 562
PspGI CCWGG 2 cut(s) 389, 562
PspN4I GGNNCC 2 cut(s) 101, 371
PspPI GGNCC 1 cut(s) 1049
PvuII CAGCTG 1 cut(s) 1055
RruI TCGCGA 1 cut(s) 417
RsaI GTAC 1 cut(s) 690
RsaNI GTAC 1 cut(s) 689
RseI CAYNNNNRTG 2 cut(s) 833, 1044
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 6 cut(s) 377, 525, 638, 888, 948, 1062
SatI GCNGC 3 cut(s) 17, 153, 319
Sau3AI GATC 4 cut(s) 118, 586, 883, 936
Sau96I GGNCC 1 cut(s) 1049
ScrFI CCNGG 3 cut(s) 391, 406, 564
SduI GDGCHC 1 cut(s) 881
SexAI ACCWGGT 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 627
SfuI TTCGAA 3 cut(s) 400, 510, 785
SinI GGWCC 1 cut(s) 1049
SmiMI CAYNNNNRTG 2 cut(s) 833, 1044
SmlI CTYRAG 2 cut(s) 481, 637
SmoI CTYRAG 2 cut(s) 481, 637
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 2 cut(s) 351, 891
SsiI CCGC 2 cut(s) 153, 318
SspMI CTAG 2 cut(s) 381, 1101
StyD4I CCNGG 3 cut(s) 389, 404, 562
StyI CCWWGG 3 cut(s) 217, 254, 1039
TaaI ACNGT 2 cut(s) 104, 314
TaiI ACGT 2 cut(s) 54, 82
TaqI TCGA 8 cut(s) 121, 291, 301, 400, 510, 519, 785, 1089
TasI AATT 2 cut(s) 351, 891
TauI GCSGC 2 cut(s) 155, 321
TfiI GAWTC 6 cut(s) 126, 272, 303, 397, 409, 533
Tru1I TTAA 6 cut(s) 377, 525, 638, 888, 948, 1062
Tru9I TTAA 6 cut(s) 377, 525, 638, 888, 948, 1062
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 2 cut(s) 525, 834
TspGWI ACGGA 1 cut(s) 724
TspRI CASTG 1 cut(s) 319
Vha464I CTTAAG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 1049
XapI RAATTY 1 cut(s) 351
XceI RCATGY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 2 cut(s) 835, 838
XspI CTAG 2 cut(s) 381, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.