AT3G18320

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
6289039 .. 6290401
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18320.1

Sequence Viewer

Length: 573 bp
ATGGAGTACTTTAGAAAATGTTTGTCTTTGAAGGGAAACACTTACTGGTTGGGTATAGATAGAAGACGAAGGCCACCGGACCTTCGCATAACCTTGATCAAATTTGATTTTGGAACAGAGAAATTTGGTTATGTTCCTCTGCCTCCCCCCTGTCAAGTGCATGGTTTTGAGGCTTCTAGGCTTTCCGCTGTGGGAGACGAGAAGCTTTCACTGTTACTAGTGGGAGATTCTACATCAAATACTGAGTTATGGGTGACAAGTAAGATTGGTGAGGCCAATGTGGTGTCGTGGAGCAAGGTGTTATCATTGTATCCAAAGCCTAACGTTGGTTTTTGGCATGGCCTAAGTTTCTTGCTAGACGAGGAGAAGAAAGTCTTGTTGTGTTGTAAGAGTAAGGGATGGATGAAGGAAGAAGACGAAGACAATGTTTACATTGTTGGGGAGGATACTAAATTCATACTACTGAATTTTGGAGTTCAGACAATTGGAGGATATTCGCCAATTATTGTTAATTATGTTCCAAGTTTGGGTCAGATCGAGCTAGCTGGAAGCAAAAGGAAAAGAGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

190

Amino Acids

21.56

Weight (kDa)

8.27

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 179 1.4e-40 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclI AACGTT 1 cut(s) 324
AcsI RAATTY 4 cut(s) 101, 122, 452, 466
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 326, 527
AgsI TTSAA 1 cut(s) 31
AhlI ACTAGT 1 cut(s) 217
AluBI AGCT 3 cut(s) 205, 541, 545
AluI AGCT 3 cut(s) 205, 541, 545
Alw26I GTCTC 1 cut(s) 189
AoxI GGCC 3 cut(s) 71, 273, 340
ApoI RAATTY 4 cut(s) 101, 122, 452, 466
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 265, 281
AsuNHI GCTAGC 1 cut(s) 541
AvaII GGWCC 1 cut(s) 79
BbsI GAAGAC 3 cut(s) 70, 420, 426
BccI CCATC 1 cut(s) 393
BciVI GTATCC 2 cut(s) 321, 439
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 4 cut(s) 177, 218, 356, 542
BfuI GTATCC 2 cut(s) 321, 439
BmcAI AGTACT 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmtI GCTAGC 1 cut(s) 545
BpiI GAAGAC 3 cut(s) 70, 420, 426
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 527
Bse1I ACTGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 404, 408
BseLI CCNNNNNNNGG 2 cut(s) 326, 527
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 377
BshFI GGCC 3 cut(s) 73, 275, 342
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 326, 527
BsmAI GTCTC 1 cut(s) 189
BsmBI CGTCTC 1 cut(s) 189
BsnI GGCC 3 cut(s) 73, 275, 342
Bsp143I GATC 2 cut(s) 96, 534
BspACI CCGC 1 cut(s) 186
BspANI GGCC 3 cut(s) 73, 275, 342
BspCNI CTCAG 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 545
BsrI ACTGG 1 cut(s) 50
BssMI GATC 2 cut(s) 96, 534
Bst4CI ACNGT 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 2 cut(s) 243, 344
BstF5I GGATG 2 cut(s) 404, 408
BstKTI GATC 2 cut(s) 99, 537
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 96, 534
BstV2I GAAGAC 3 cut(s) 70, 420, 426
BsuI GTATCC 2 cut(s) 321, 439
BsuRI GGCC 3 cut(s) 73, 275, 342
BtsCI GGATG 2 cut(s) 404, 408
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 543
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 161, 338
CviJI RGCY 9 cut(s) 73, 173, 181, 205, 275, 319, 342, 541, 545
CviKI_1 RGCY 9 cut(s) 73, 173, 181, 205, 275, 319, 342, 541, 545
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 243, 344
DpnI GATC 2 cut(s) 98, 536
DpnII GATC 2 cut(s) 96, 534
Eco47I GGWCC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 2 cut(s) 164, 341
FaiI YATR 8 cut(s) 56, 89, 132, 162, 250, 339, 458, 516
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 2 cut(s) 160, 337
FbaI TGATCA 1 cut(s) 96
FokI GGATG 2 cut(s) 411, 415
FspBI CTAG 4 cut(s) 177, 218, 356, 542
HaeIII GGCC 3 cut(s) 73, 275, 342
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 164, 341
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 77
HphI GGTGA 2 cut(s) 265, 281
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 2 cut(s) 480, 534
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 4 cut(s) 25, 63, 92, 400
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 243, 344
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 164, 341
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 534
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 4 cut(s) 31, 90, 163, 531
MaeI CTAG 4 cut(s) 177, 218, 356, 542
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 213, 253
MalI GATC 2 cut(s) 98, 536
MboI GATC 2 cut(s) 96, 534
MboII GAAGA 5 cut(s) 75, 379, 422, 425, 431
MfeI CAATTG 1 cut(s) 483
MluCI AATT 7 cut(s) 101, 122, 452, 466, 483, 501, 511
MnlI CCTC 7 cut(s) 147, 153, 163, 265, 355, 436, 482
MseI TTAA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 483
NdeII GATC 2 cut(s) 96, 534
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 2 cut(s) 164, 341
NmuCI GTSAC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 227
Psp1406I AACGTT 1 cut(s) 324
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 510
Sau3AI GATC 2 cut(s) 96, 534
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 8
SetI ASST 7 cut(s) 84, 95, 207, 300, 327, 543, 547
SinI GGWCC 1 cut(s) 79
SpeI ACTAGT 1 cut(s) 217
Sse9I AATT 7 cut(s) 101, 122, 452, 466, 483, 501, 511
SsiI CCGC 1 cut(s) 186
SspMI CTAG 4 cut(s) 177, 218, 356, 542
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 537
TasI AATT 7 cut(s) 101, 122, 452, 466, 483, 501, 511
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 419, 445
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 4 cut(s) 101, 122, 452, 466
XspI CTAG 4 cut(s) 177, 218, 356, 542
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.