AT1G12170

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Reverse (-)
4128607 .. 4129701
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12170.1

Sequence Viewer

Length: 1095 bp
ATGATGCATGTAATCCTTCCATGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCTCTATCTCTAACCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAATCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAGTTCCTCTTATGGACCGATTCCAAGATGTATTCAGTAAGCGTCAATCTCAACGATGATCAAAAGATAGATATGCGTGAGCTACCCTTAGATATTCCTTATTTGAATAATTTTATGCGTACCTACTTTACTCCTTGTGACGGCTTATTGTTTTGTGACTCGTGGTCATGGAGAAAGAAAGCTGCGATTTGGAACCCGTGGTTGAGACAAACTAAATGGATAGAGTACTCTAAGGAAAAAACTTTCACGTTTCGTGGCATAGGATACGATAGTGGTAGACCTGACAAAGGTCACAAGATAATTGGGTCAAGTATTTATAATAAGCGAAAACTCATTGAAGATCCATTATACCGAAGTGTTGAAATCTACACGTTCGAAACTAATGGGTGGAAGAGTATGAATACCTTTTCTGAAGAAGGAGAGATCCGCCCATTAAGTGATGTGTCTTTGAATGGAAATTTATATTGGGTTGTTAGCAATGGCGAGACACATGAGTGTTTTATCGAAAGTTTCGATTTTTCGAAAGAGATATATAAATGTTTTTGCACTCTACCGTGGAATTATAATTCTTTCCATGTTCCAGTCCTCTCAACTTTTAGGAAAGATCGACTTTCAGTGTTAAAAAGAAAGAGAATGGCCGAAACAAATAATATTGAGATTTGGGTGACAAAAAACAAGATTAATGACGATGGGGAGCCTGTAGCGTGGATAAAGTTCATGACAGTTTCAATAGCTATTTCTAGTAACTCTTCTCCAAGTTTCTTCATCGATAATGTCTACCAAAAGAGTTTTATCATGTGTTGTGAGGATGAAAATAACAAGCTTTGCGTTTATATTGTGAGGGGCAATGCGTTGACGAAGATTCAAATTGTAGGTGTTGATGCTAAAAATTATATTAATCATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

364

Amino Acids

42.83

Weight (kDa)

8.76

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 42 3.7e-08 F-box domain
FBA_1 PF07734 53 - 363 3.1e-80 F-box associated beta propeller domain
FBA_3 PF08268 81 - 354 2.7e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 474, 720
AccI GTMKAC 2 cut(s) 433, 933
AciI CCGC 2 cut(s) 56, 583
AclWI GGATC 3 cut(s) 491, 574, 1075
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 2 cut(s) 277, 383
AfiI CCNNNNNNNGG 3 cut(s) 22, 296, 443
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 8 cut(s) 79, 112, 262, 494, 518, 607, 885, 1022
AhdI GACNNNNNGTC 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
AleI CACNNNNGTG 1 cut(s) 649
AluBI AGCT 4 cut(s) 238, 338, 890, 979
AluI AGCT 4 cut(s) 238, 338, 890, 979
Alw26I GTCTC 2 cut(s) 355, 635
AlwI GGATC 3 cut(s) 491, 574, 1075
AoxI GGCC 1 cut(s) 792
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 613
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AseI ATTAAT 2 cut(s) 837, 1053
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 832
AsuII TTCGAA 2 cut(s) 531, 677
AvaII GGWCC 1 cut(s) 171
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
BauI CACGAG 1 cut(s) 316
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 839
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciVI GTATCC 1 cut(s) 413
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 355, 635
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 1 cut(s) 855
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 171
BmeRI GACNNNNNGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 350, 852
BmrI ACTGGG 2 cut(s) 1068, 1079
BmsI GCATC 1 cut(s) 1027
BmuI ACTGGG 2 cut(s) 1068, 1079
BoxI GACNNNNGTC 1 cut(s) 444
Bpu14I TTCGAA 2 cut(s) 531, 677
Bsa29I ATCGAT 1 cut(s) 924
BsaJI CCNNGG 3 cut(s) 20, 353, 710
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 296, 443
Bse1I ACTGG 3 cut(s) 737, 1074, 1085
Bse3DI GCAATG 2 cut(s) 640, 1009
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 3 cut(s) 20, 353, 710
BseGI GGATG 1 cut(s) 970
BseLI CCNNNNNNNGG 3 cut(s) 22, 296, 443
BseMI GCAATG 2 cut(s) 640, 1009
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 3 cut(s) 737, 1074, 1085
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 1 cut(s) 794
BshVI ATCGAT 1 cut(s) 924
BslI CCNNNNNNNGG 3 cut(s) 22, 296, 443
BsmAI GTCTC 2 cut(s) 355, 635
BsnI GGCC 1 cut(s) 794
Bsp119I TTCGAA 2 cut(s) 531, 677
Bsp143I GATC 5 cut(s) 214, 496, 579, 760, 1080
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 2 cut(s) 56, 583
BspANI GGCC 1 cut(s) 794
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 924
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 2 cut(s) 350, 852
BspPI GGATC 3 cut(s) 491, 574, 1075
BspT104I TTCGAA 2 cut(s) 531, 677
BsrDI GCAATG 2 cut(s) 640, 1009
BsrI ACTGG 3 cut(s) 737, 1074, 1085
BssECI CCNNGG 3 cut(s) 20, 353, 710
BssMI GATC 5 cut(s) 214, 496, 579, 760, 1080
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 711, 880
Bst6I CTCTTC 3 cut(s) 30, 542, 910
BstBI TTCGAA 2 cut(s) 531, 677
BstDEI CTNAG 3 cut(s) 156, 244, 387
BstDSI CCRYGG 3 cut(s) 20, 353, 710
BstENI CCTNNNNNAGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 970
BstKTI GATC 5 cut(s) 217, 499, 582, 763, 1083
BstMAI GTCTC 2 cut(s) 355, 635
BstMBI GATC 5 cut(s) 214, 496, 579, 760, 1080
BstNSI RCATGY 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 444
BstSFI CTRYAG 1 cut(s) 855
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 496, 579
BstYI RGATCY 2 cut(s) 496, 579
Bsu15I ATCGAT 1 cut(s) 924
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 794
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 3 cut(s) 20, 353, 710
BtsCI GGATG 1 cut(s) 970
BtsIMutI CAGTG 1 cut(s) 777
CciI TCATGA 1 cut(s) 873
Cfr13I GGNCC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 276, 382
CviAII CATG 7 cut(s) 8, 21, 324, 647, 731, 874, 952
CviJI RGCY 7 cut(s) 238, 300, 338, 794, 853, 890, 979
CviKI_1 RGCY 7 cut(s) 238, 300, 338, 794, 853, 890, 979
CviQI GTAC 2 cut(s) 276, 382
DdeI CTNAG 3 cut(s) 156, 244, 387
DpnI GATC 5 cut(s) 216, 498, 581, 762, 1082
DpnII GATC 5 cut(s) 214, 496, 579, 760, 1080
DriI GACNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 3 cut(s) 30, 542, 910
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 3 cut(s) 30, 542, 910
EciI GGCGGA 2 cut(s) 45, 572
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 588
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 7 cut(s) 11, 24, 327, 650, 734, 877, 955
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 7 cut(s) 7, 20, 323, 646, 730, 873, 951
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 2 cut(s) 433, 933
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 977
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 897
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 794
HgaI GACGC 1 cut(s) 187
Hin1II CATG 7 cut(s) 11, 24, 327, 650, 734, 877, 955
HincII GTYRAC 2 cut(s) 130, 1011
HindII GTYRAC 2 cut(s) 130, 1011
HindIII AAGCTT 1 cut(s) 977
HinfI GANTC 4 cut(s) 75, 176, 314, 1018
HphI GGTGA 1 cut(s) 832
Hpy166II GTNNAC 4 cut(s) 130, 434, 934, 1011
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 1 cut(s) 874
Hpy8I GTNNAC 4 cut(s) 130, 434, 934, 1011
HpyAV CCTTC 2 cut(s) 26, 566
HpyCH4III ACNGT 2 cut(s) 711, 880
HpyCH4IV ACGT 2 cut(s) 404, 527
HpyCH4V TGCA 3 cut(s) 7, 90, 702
HpyF3I CTNAG 3 cut(s) 156, 244, 387
HpySE526I ACGT 2 cut(s) 404, 527
Hsp92II CATG 7 cut(s) 11, 24, 327, 650, 734, 877, 955
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 5 cut(s) 214, 496, 579, 760, 1080
LmnI GCTCC 1 cut(s) 850
LpnPI CCDG 4 cut(s) 450, 750, 867, 1087
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 1027
MaeI CTAG 1 cut(s) 897
MaeII ACGT 2 cut(s) 404, 527
MaeIII GTNAC 5 cut(s) 293, 311, 446, 820, 899
MalI GATC 5 cut(s) 216, 498, 581, 762, 1082
MboI GATC 5 cut(s) 214, 496, 579, 760, 1080
MboII GAAGA 7 cut(s) 47, 506, 559, 581, 897, 910, 1027
MflI RGATCY 2 cut(s) 496, 579
MluCI AATT 8 cut(s) 26, 265, 456, 613, 715, 721, 1023, 1045
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 6 cut(s) 69, 165, 173, 752, 955, 990
Mph1103I ATGCAT 1 cut(s) 9
MseI TTAA 4 cut(s) 590, 776, 837, 1053
MslI CAYNNNNRTG 1 cut(s) 649
NcoI CCATGG 1 cut(s) 20
NdeII GATC 5 cut(s) 214, 496, 579, 760, 1080
NlaIII CATG 7 cut(s) 11, 24, 327, 650, 734, 877, 955
NlaIV GGNNCC 2 cut(s) 350, 852
NmuCI GTSAC 4 cut(s) 293, 311, 446, 820
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 2 cut(s) 531, 677
OliI CACNNNNGTG 1 cut(s) 649
PagI TCATGA 1 cut(s) 873
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PfeI GAWTC 3 cut(s) 75, 176, 1018
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PshAI GACNNNNGTC 1 cut(s) 444
PshBI ATTAAT 2 cut(s) 837, 1053
PsiI TTATAA 2 cut(s) 474, 720
PspN4I GGNNCC 2 cut(s) 350, 852
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 2 cut(s) 496, 579
RsaI GTAC 2 cut(s) 277, 383
RsaNI GTAC 2 cut(s) 276, 382
RseI CAYNNNNRTG 1 cut(s) 649
SaqAI TTAA 4 cut(s) 590, 776, 837, 1053
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 5 cut(s) 214, 496, 579, 760, 1080
Sau96I GGNCC 1 cut(s) 171
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 1027
SfcI CTRYAG 1 cut(s) 855
SfuI TTCGAA 2 cut(s) 531, 677
SinI GGWCC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 649
Sse9I AATT 8 cut(s) 26, 265, 456, 613, 715, 721, 1023, 1045
SsiI CCGC 2 cut(s) 56, 583
SspI AATATT 1 cut(s) 808
SspMI CTAG 1 cut(s) 897
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 711, 880
TaiI ACGT 2 cut(s) 407, 530
TaqI TCGA 6 cut(s) 531, 660, 669, 677, 763, 924
TaqII GACCGA 1 cut(s) 188
TasI AATT 8 cut(s) 26, 265, 456, 613, 715, 721, 1023, 1045
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 3 cut(s) 75, 176, 1018
Tru1I TTAA 4 cut(s) 590, 776, 837, 1053
Tru9I TTAA 4 cut(s) 590, 776, 837, 1053
TscAI CASTG 1 cut(s) 777
TseFI GTSAC 4 cut(s) 293, 311, 446, 820
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 4 cut(s) 293, 311, 446, 820
TspDTI ATGAA 4 cut(s) 569, 862, 910, 981
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 171
VspI ATTAAT 2 cut(s) 837, 1053
XagI CCTNNNNNAGG 1 cut(s) 441
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 11
XmiI GTMKAC 2 cut(s) 433, 933
XspI CTAG 1 cut(s) 897
ZrmI AGTACT 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.