AT3G24580

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8969162 .. 8970298
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24580.1

Sequence Viewer

Length: 1137 bp
ATGACGAAGATGTCTAATCTCCCTAATGATTTGGCGGAAGAGGTGCTCTCTAGGGTTTCGTTAACATCTCTGAGAAACGTCCGACTTACTTGTAAAGATTGGAATACTTTATCTAAAGGTGAGAGCTTTGCAAAGAATCACCTTGGTTATCAAGCAATAGTAGCAGCGAAGGAAAAAGAGTTTATGATGGTCCTGATGATGGATTTTAGGGTTTATTTGATTCGAGTCAACGTTCACAATGACATTGAGTCGTGTATTAAGCCTGAAGGTGAGCTTATTAGCTTGGGCGATGAAGTCGATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGCTATGCATCACGGAAGATAACGAAGATAACGCTAAGGTCGTTCTTTGGAACCCGTATTGGGGGCAAACACGGTGGATCGAGTCTACAAATAATTTCCACAAATTGGACATGTATACGTATGCTCTCGGATACAAGAAGAGCAGCAAATCAAGCCGCAGCTACAAAATCTTGAGATTTATTGATTTTTCTCCCACTTGTTCTGAGTTCAAAATCTACAATATCAACTCTGATTCATGGAAGGTTCTTGATGTGTCTCCAGACTGGAAGATAGATTCTTATATTCGTGGCGTGTCTCTCAAGGGAAATACATACTGGATTGCTAGAGAGAGGCACGGATACGGCCATACTTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGATTTAGGTCGCGTTTACCTCTGCCGAGTCAGCCGTGTGTTTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTTGCTGTTTTATTTCAGTGCTCAAGTACATTGGAGATGCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGGTGTTGTGGAACAGCAAGGTGTTCTTAGCTGTGGATATGCACTCACTTAAGTTTCAGTTTCAAGTTAGAGCTTCGAGTTTCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGATAAAGAAAAACGTTATTTAGCGTCCTCTCGCAACAAAGCTTACATCGTTGGAGTGGATGGAACCTGGGAACAAGTGGACCTTGGAATGTCTGTAGACAAATTTGTTTACCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTGCATTTTTGA

Protein Analysis

378

Amino Acids

43.8

Weight (kDa)

6.72

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 1.6e-08 F-box domain
F-box-like PF12937 4 - 42 2.7e-06 F-box-like
FBA_1 PF07734 62 - 377 6.8e-110 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 3 cut(s) 416, 446, 1080
AccII CGCG 1 cut(s) 724
AciI CCGC 3 cut(s) 35, 487, 866
AclI AACGTT 2 cut(s) 231, 997
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 1 cut(s) 1085
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 820
AfiI CCNNNNNNNGG 4 cut(s) 199, 391, 392, 436
AflII CTTAAG 1 cut(s) 914
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 2 cut(s) 541, 929
AhdI GACNNNNNGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 1049
AleI CACNNNNGTG 1 cut(s) 1102
AluBI AGCT 8 cut(s) 126, 274, 282, 492, 793, 896, 938, 1025
AluI AGCT 8 cut(s) 126, 274, 282, 492, 793, 896, 938, 1025
Alw21I GWGCWC 3 cut(s) 48, 815, 1109
Alw26I GTCTC 2 cut(s) 591, 630
AlwI GGATC 1 cut(s) 416
AoxI GGCC 1 cut(s) 673
ApeKI GCWGC 4 cut(s) 164, 474, 489, 790
ApoI RAATTY 1 cut(s) 1085
AspS9I GGNCC 2 cut(s) 190, 1063
AsuHPI GGTGA 3 cut(s) 131, 131, 281
AvaII GGWCC 2 cut(s) 190, 1063
BanII GRGCYC 1 cut(s) 861
Bbv12I GWGCWC 3 cut(s) 48, 815, 1109
BbvI GCAGC 4 cut(s) 176, 486, 501, 802
BccI CCATC 3 cut(s) 181, 193, 1037
BceAI ACGGC 2 cut(s) 688, 730
BciT130I CCWGG 1 cut(s) 1051
BciVI GTATCC 2 cut(s) 455, 662
BcoDI GTCTC 2 cut(s) 591, 630
BfaI CTAG 3 cut(s) 51, 654, 774
BfmI CTRYAG 1 cut(s) 1077
BfrI CTTAAG 1 cut(s) 914
BfuI GTATCC 2 cut(s) 455, 662
BglII AGATCT 1 cut(s) 834
BisI GCNGC 5 cut(s) 165, 475, 487, 490, 791
BlsI GCNGC 5 cut(s) 166, 476, 488, 491, 792
Bme1390I CCNGG 1 cut(s) 1051
Bme18I GGWCC 2 cut(s) 190, 1063
BmeRI GACNNNNNGTC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 190, 1063
BmiI GGNNCC 2 cut(s) 383, 1048
BmrFI CCNGG 1 cut(s) 1051
BmsI GCATC 2 cut(s) 348, 819
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 366
BpuEI CTTGAG 4 cut(s) 291, 523, 614, 799
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 833
BsaJI CCNNGG 3 cut(s) 142, 1050, 1066
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 391, 392, 436
Bse1I ACTGG 2 cut(s) 599, 650
Bse8I GATNNNNATC 1 cut(s) 833
BseBI CCWGG 1 cut(s) 1051
BseDI CCNNGG 3 cut(s) 142, 1050, 1066
BseGI GGATG 1 cut(s) 1048
BseJI GATNNNNATC 1 cut(s) 833
BseLI CCNNNNNNNGG 4 cut(s) 199, 391, 392, 436
BseMII CTCAG 2 cut(s) 62, 525
BseNI ACTGG 2 cut(s) 599, 650
BseRI GAGGAG 1 cut(s) 974
BseXI GCAGC 4 cut(s) 176, 486, 501, 802
Bsh1236I CGCG 1 cut(s) 724
BshFI GGCC 1 cut(s) 675
BsiHKAI GWGCWC 3 cut(s) 48, 815, 1109
BslI CCNNNNNNNGG 4 cut(s) 199, 391, 392, 436
BsmAI GTCTC 2 cut(s) 591, 630
BsnI GGCC 1 cut(s) 675
Bsp1286I GDGCHC 4 cut(s) 48, 815, 861, 1109
Bsp143I GATC 2 cut(s) 408, 834
BspACI CCGC 3 cut(s) 35, 487, 866
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 2 cut(s) 63, 526
BspFNI CGCG 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 383, 1048
BspPI GGATC 1 cut(s) 416
BspQI GCTCTTC 2 cut(s) 464, 780
BspTI CTTAAG 1 cut(s) 914
BsrI ACTGG 2 cut(s) 599, 650
BssECI CCNNGG 3 cut(s) 142, 1050, 1066
BssMI GATC 2 cut(s) 408, 834
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 142, 1066
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 1051
Bst4CI ACNGT 3 cut(s) 326, 405, 763
Bst6I CTCTTC 4 cut(s) 33, 464, 780, 959
BstAFI CTTAAG 1 cut(s) 914
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 5 cut(s) 71, 366, 534, 685, 892
BstF5I GGATG 1 cut(s) 1048
BstFNI CGCG 1 cut(s) 724
BstKTI GATC 2 cut(s) 411, 837
BstMAI GTCTC 2 cut(s) 591, 630
BstMBI GATC 2 cut(s) 408, 834
BstMWI GCNNNNNNNGC 3 cut(s) 161, 483, 742
BstNI CCWGG 1 cut(s) 1051
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 1049
BstSFI CTRYAG 1 cut(s) 1077
BstSNI TACGTA 1 cut(s) 450
BstUI CGCG 1 cut(s) 724
BstV1I GCAGC 4 cut(s) 176, 486, 501, 802
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
BstZ17I GTATAC 1 cut(s) 447
BsuI GTATCC 2 cut(s) 455, 662
BsuRI GGCC 1 cut(s) 675
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 1048
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 316, 815
Cac8I GCNNGC 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 190, 1063
CseI GACGC 1 cut(s) 996
Csp6I GTAC 1 cut(s) 819
CspCI CAANNNNNGTGG 2 cut(s) 386, 421
CviAII CATG 2 cut(s) 442, 567
CviQI GTAC 1 cut(s) 819
DdeI CTNAG 5 cut(s) 71, 366, 534, 685, 892
DpnI GATC 2 cut(s) 410, 836
DpnII GATC 2 cut(s) 408, 834
DrdI GACNNNNNNGTC 1 cut(s) 10
DriI GACNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 673
Eam1104I CTCTTC 4 cut(s) 33, 464, 780, 959
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 4 cut(s) 33, 464, 780, 959
EciI GGCGGA 1 cut(s) 50
Eco105I TACGTA 1 cut(s) 450
Eco130I CCWWGG 2 cut(s) 142, 1066
Eco24I GRGCYC 1 cut(s) 861
Eco47I GGWCC 2 cut(s) 190, 1063
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 1049
EcoT14I CCWWGG 2 cut(s) 142, 1066
EcoT22I ATGCAT 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 2 cut(s) 142, 1066
FaeI CATG 2 cut(s) 445, 570
FalI AAGNNNNNCTT 8 cut(s) 258, 290, 777, 809, 875, 907, 1050, 1082
FatI CATG 2 cut(s) 441, 566
FblI GTMKAC 3 cut(s) 416, 446, 1080
Fnu4HI GCNGC 5 cut(s) 165, 475, 487, 490, 791
FokI GGATG 1 cut(s) 1055
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 5 cut(s) 165, 475, 487, 490, 791
FspBI CTAG 3 cut(s) 51, 654, 774
GluI GCNGC 5 cut(s) 165, 475, 487, 490, 791
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 675
HgaI GACGC 1 cut(s) 996
Hin1II CATG 2 cut(s) 445, 570
HincII GTYRAC 2 cut(s) 63, 229
HindII GTYRAC 2 cut(s) 63, 229
HindIII AAGCTT 1 cut(s) 1023
HinfI GANTC 9 cut(s) 136, 220, 225, 248, 413, 563, 605, 739, 766
HpaI GTTAAC 1 cut(s) 63
HphI GGTGA 3 cut(s) 131, 131, 281
Hpy166II GTNNAC 9 cut(s) 63, 229, 235, 417, 447, 728, 1063, 1081, 1093
Hpy188I TCNGA 5 cut(s) 72, 83, 461, 535, 562
Hpy188III TCNNGA 4 cut(s) 193, 502, 578, 590
Hpy8I GTNNAC 9 cut(s) 63, 229, 235, 417, 447, 728, 1063, 1081, 1093
Hpy99I CGWCG 2 cut(s) 326, 959
HpyAV CCTTC 3 cut(s) 163, 260, 565
HpyCH4III ACNGT 3 cut(s) 326, 405, 763
HpyCH4IV ACGT 4 cut(s) 78, 231, 449, 997
HpyCH4V TGCA 5 cut(s) 131, 339, 832, 907, 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 483, 742
HpyF3I CTNAG 5 cut(s) 71, 366, 534, 685, 892
HpySE526I ACGT 4 cut(s) 78, 231, 449, 997
Hsp92II CATG 2 cut(s) 445, 570
KspAI GTTAAC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 408, 834
LguI GCTCTTC 2 cut(s) 464, 780
LpnPI CCDG 8 cut(s) 206, 276, 580, 603, 631, 823, 1036, 1063
Lsp1109I GCAGC 4 cut(s) 176, 486, 501, 802
LweI GCATC 2 cut(s) 348, 819
MaeI CTAG 3 cut(s) 51, 654, 774
MaeII ACGT 4 cut(s) 78, 231, 449, 997
MaeIII GTNAC 1 cut(s) 841
MalI GATC 2 cut(s) 410, 836
MboI GATC 2 cut(s) 408, 834
MboII GAAGA 8 cut(s) 19, 50, 359, 368, 481, 610, 797, 976
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 4 cut(s) 48, 815, 861, 1109
MluCI AATT 4 cut(s) 424, 434, 852, 1085
MlyI GAGTC 5 cut(s) 234, 257, 422, 748, 775
MmeI TCCRAC 2 cut(s) 106, 1015
MnlI CCTC 5 cut(s) 34, 654, 741, 952, 1021
Mph1103I ATGCAT 1 cut(s) 341
MseI TTAA 3 cut(s) 62, 258, 915
MslI CAYNNNNRTG 1 cut(s) 1102
MspCI CTTAAG 1 cut(s) 914
MspR9I CCNGG 1 cut(s) 1051
MvaI CCWGG 1 cut(s) 1051
MvnI CGCG 1 cut(s) 724
MwoI GCNNNNNNNGC 3 cut(s) 161, 483, 742
NdeII GATC 2 cut(s) 408, 834
NlaIII CATG 2 cut(s) 445, 570
NlaIV GGNNCC 2 cut(s) 383, 1048
NmeAIII GCCGAG 1 cut(s) 762
NsiI ATGCAT 1 cut(s) 341
NspI RCATGY 1 cut(s) 445
OliI CACNNNNGTG 1 cut(s) 1102
PciI ACATGT 1 cut(s) 441
PciSI GCTCTTC 2 cut(s) 464, 780
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 4 cut(s) 136, 220, 563, 605
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 5 cut(s) 166, 476, 488, 491, 792
PleI GAGTC 5 cut(s) 233, 256, 421, 747, 774
PpsI GAGTC 5 cut(s) 233, 256, 421, 747, 774
Ppu21I YACGTR 1 cut(s) 450
PscI ACATGT 1 cut(s) 441
Psp1406I AACGTT 2 cut(s) 231, 997
Psp6I CCWGG 1 cut(s) 1049
PspGI CCWGG 1 cut(s) 1049
PspN4I GGNNCC 2 cut(s) 383, 1048
PspPI GGNCC 2 cut(s) 190, 1063
PsuI RGATCY 1 cut(s) 834
RsaI GTAC 1 cut(s) 820
RsaNI GTAC 1 cut(s) 819
RseI CAYNNNNRTG 1 cut(s) 1102
SapI GCTCTTC 2 cut(s) 464, 780
SaqAI TTAA 3 cut(s) 62, 258, 915
SatI GCNGC 5 cut(s) 165, 475, 487, 490, 791
Sau3AI GATC 2 cut(s) 408, 834
Sau96I GGNCC 2 cut(s) 190, 1063
SchI GAGTC 5 cut(s) 234, 257, 422, 748, 775
ScrFI CCNGG 1 cut(s) 1051
SduI GDGCHC 4 cut(s) 48, 815, 861, 1109
SfaNI GCATC 2 cut(s) 348, 819
SfcI CTRYAG 1 cut(s) 1077
SinI GGWCC 2 cut(s) 190, 1063
SmiMI CAYNNNNRTG 1 cut(s) 1102
SmlI CTYRAG 5 cut(s) 306, 502, 629, 814, 914
SmoI CTYRAG 5 cut(s) 306, 502, 629, 814, 914
SnaBI TACGTA 1 cut(s) 450
Sse9I AATT 4 cut(s) 424, 434, 852, 1085
SsiI CCGC 3 cut(s) 35, 487, 866
SspMI CTAG 3 cut(s) 51, 654, 774
StyD4I CCNGG 1 cut(s) 1049
StyI CCWWGG 2 cut(s) 142, 1066
TaaI ACNGT 3 cut(s) 326, 405, 763
TaiI ACGT 4 cut(s) 81, 234, 452, 1000
TaqI TCGA 5 cut(s) 223, 297, 411, 941, 954
TasI AATT 4 cut(s) 424, 434, 852, 1085
TatI WGTACW 1 cut(s) 818
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 4 cut(s) 136, 220, 563, 605
Tru1I TTAA 3 cut(s) 62, 258, 915
Tru9I TTAA 3 cut(s) 62, 258, 915
TscAI CASTG 2 cut(s) 323, 815
TseI GCWGC 4 cut(s) 164, 474, 489, 790
TspDTI ATGAA 2 cut(s) 306, 555
TspGWI ACGGA 2 cut(s) 359, 681
TspRI CASTG 2 cut(s) 323, 815
Van91I CCANNNNNTGG 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 914
VpaK11BI GGWCC 2 cut(s) 190, 1063
XapI RAATTY 1 cut(s) 1085
XceI RCATGY 1 cut(s) 445
XmiI GTMKAC 3 cut(s) 416, 446, 1080
XspI CTAG 3 cut(s) 51, 654, 774
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.