AT3G19560

F-box LRR-repeat kelch-repeat protein At1g11620

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6793311 .. 6794802
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19560.1

Sequence Viewer

Length: 1086 bp
ATGTGTATGACTATGATGTCCGATATCTCGCAGGATTTGTTAGAGGAGATTCTCTCTAGGGTTCCAATAACATCTCTGAGAGCAGTGAAATCTACTTGCAAACGATGGAAGGATTTATTGAATGATCCGAGCTTTTCAAAGAAGTATGGTGGTAAACGAGACAACGAGTTTCTGGCGATCATGACGAGTGGTAGTAGGGCTTCTTTAATGAGCGTAAATCTCCATGGACCTCGTGACAATAAAGACTTGGAAGATCCTTTTATAAAGCAAATAGGTGAACTTAATCAAGACCAGATATTTAAAGTGTTTCATTGTGATGGTTTATTGTTATGCATCACCAATGAGGATAATACTAGGCTCGTGGTATGGAACCCGTATTTGGCACAAACCAGGTGCATCCAACCCATCGACAAATTCTACATATATGATTGGTATTGTTTGGGCTACGACAAGGACAAAAACCACAAAATTTTAGTGGTTTATTCCCCTATGTTTGGCCGCATTGAGTATGAAATCTACAGTTTTTTGTCTAAATCATGGATAGTTCTTAGTTTCCCTACCGATTGGCAGATATCGCGTGATGAATGTCTGTCTCTGAAAGGAAATACTTACTTTATTGCTTATAAAAAAATGGAAGTGGAAGAAGTAGGGTTTCAAGAATTTTTACTCTGTTTTGATTTTACAAATGAGAGATTTGGACCGCTTCTCCCTCTTCCATTCCAATGTTATAATCAAACTTCTCTAGTTCTATCTACTGTTCAAGAAGAGCAGCTTGCAGTGTTATGTAAGAGGTGTGATGCATATGAGACGAAGATATGGATTACAACAAAGATTGAGCCCAATGCAGTGTCGTGGAGCTACTTCTTAAAATTTGATTTCAAGGTTGATATATCTGGTGGCAGTTTCTTCGTTGACGTGGAAGAGAAAGTAGCAGTGCTTTTTTGTATAAACAGAGAAAAAGAAAAAGGCATCAACAACAAGACATACATGATTGGAGAGGATGGATACTACAAAGAAGTGGATCTCGGAGAATCTAACTGGTGTCCATCTATGTGCTCTTATGTTCCAAGTTGTGTGCAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

361

Amino Acids

42.01

Weight (kDa)

5.11

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 47 5.3e-08 F-box domain
FBA_1 PF07734 59 - 361 7.3e-101 F-box associated beta propeller domain
FBA_3 PF08268 96 - 276 1.6e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 263, 624, 729
AasI GACNNNNNNGTC 1 cut(s) 16
AccII CGCG 1 cut(s) 577
AciI CCGC 2 cut(s) 499, 701
AclWI GGATC 3 cut(s) 119, 248, 1029
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 4 cut(s) 413, 468, 659, 869
AfiI CCNNNNNNNGG 2 cut(s) 379, 494
AgsI TTSAA 5 cut(s) 121, 138, 656, 761, 880
AjiI CACGTC 1 cut(s) 916
AjnI CCWGG 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 3 cut(s) 132, 772, 858
AluI AGCT 3 cut(s) 132, 772, 858
Alw21I GWGCWC 1 cut(s) 1058
Alw26I GTCTC 3 cut(s) 153, 597, 800
AlwI GGATC 3 cut(s) 119, 248, 1029
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 1 cut(s) 769
ApoI RAATTY 4 cut(s) 413, 468, 659, 869
AspS9I GGNCC 2 cut(s) 227, 698
AsuHPI GGTGA 2 cut(s) 287, 328
AvaII GGWCC 2 cut(s) 227, 698
BanII GRGCYC 1 cut(s) 840
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BauI CACGAG 2 cut(s) 231, 359
Bbv12I GWGCWC 1 cut(s) 1058
BbvI GCAGC 1 cut(s) 781
BccI CCATC 5 cut(s) 99, 311, 413, 995, 1054
BcgI CGANNNNNNTGC 2 cut(s) 889, 923
BciT130I CCWGG 1 cut(s) 391
BciVI GTATCC 1 cut(s) 998
BcoDI GTCTC 3 cut(s) 153, 597, 800
BfaI CTAG 3 cut(s) 57, 354, 743
BfmI CTRYAG 1 cut(s) 517
BfuI GTATCC 1 cut(s) 998
BisI GCNGC 2 cut(s) 499, 770
BlsI GCNGC 2 cut(s) 500, 771
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 2 cut(s) 227, 698
BmgBI CACGTC 1 cut(s) 916
BmgT120I GGNCC 2 cut(s) 227, 698
BmiI GGNNCC 2 cut(s) 63, 371
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 4 cut(s) 342, 405, 787, 978
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 494
Bse1I ACTGG 1 cut(s) 1043
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 396, 1006
BseLI CCNNNNNNNGG 2 cut(s) 379, 494
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 1043
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 781
Bsh1236I CGCG 1 cut(s) 577
BshFI GGCC 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 1058
BslI CCNNNNNNNGG 2 cut(s) 379, 494
BsmAI GTCTC 3 cut(s) 153, 597, 800
BsmBI CGTCTC 1 cut(s) 800
BsnI GGCC 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 840, 1058
Bsp143I GATC 4 cut(s) 124, 177, 253, 1021
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 2 cut(s) 499, 701
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 577
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 63, 371
BspPI GGATC 3 cut(s) 119, 248, 1029
BspQI GCTCTTC 1 cut(s) 759
BsrI ACTGG 1 cut(s) 1043
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 124, 177, 253, 1021
BssSI CACGAG 2 cut(s) 231, 359
BssT1I CCWWGG 1 cut(s) 223
Bst2BI CACGAG 2 cut(s) 231, 359
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 2 cut(s) 521, 757
Bst6I CTCTTC 3 cut(s) 717, 759, 915
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 2 cut(s) 77, 548
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 396, 1006
BstFNI CGCG 1 cut(s) 577
BstKTI GATC 4 cut(s) 127, 180, 256, 1024
BstMAI GTCTC 3 cut(s) 153, 597, 800
BstMBI GATC 4 cut(s) 124, 177, 253, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 517
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 781
BstX2I RGATCY 2 cut(s) 253, 1021
BstYI RGATCY 2 cut(s) 253, 1021
BsuI GTATCC 1 cut(s) 998
BsuRI GGCC 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 223
BtrI CACGTC 1 cut(s) 916
BtsCI GGATG 2 cut(s) 396, 1006
BtsI GCAGTG 4 cut(s) 90, 783, 852, 939
BtsIMutI CAGTG 4 cut(s) 90, 783, 852, 939
Cac8I GCNNGC 1 cut(s) 774
CciI TCATGA 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 227, 698
CsiI ACCWGGT 1 cut(s) 389
CviAII CATG 4 cut(s) 181, 224, 537, 988
CviJI RGCY 8 cut(s) 132, 200, 358, 444, 498, 772, 838, 858
CviKI_1 RGCY 8 cut(s) 132, 200, 358, 444, 498, 772, 838, 858
DdeI CTNAG 2 cut(s) 77, 548
DpnI GATC 4 cut(s) 126, 179, 255, 1023
DpnII GATC 4 cut(s) 124, 177, 253, 1021
DraI TTTAAA 1 cut(s) 301
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 3 cut(s) 717, 759, 915
EarI CTCTTC 3 cut(s) 717, 759, 915
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 840
Eco32I GATATC 2 cut(s) 25, 573
Eco47I GGWCC 2 cut(s) 227, 698
EcoRII CCWGG 1 cut(s) 389
EcoRV GATATC 2 cut(s) 25, 573
EcoT14I CCWWGG 1 cut(s) 223
EcoT22I ATGCAT 2 cut(s) 335, 802
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 800
FaeI CATG 4 cut(s) 184, 227, 540, 991
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FatI CATG 4 cut(s) 180, 223, 536, 987
FauNDI CATATG 1 cut(s) 802
Fnu4HI GCNGC 2 cut(s) 499, 770
FokI GGATG 2 cut(s) 383, 1013
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 2 cut(s) 499, 770
FspBI CTAG 3 cut(s) 57, 354, 743
GluI GCNGC 2 cut(s) 499, 770
HaeIII GGCC 1 cut(s) 498
Hin1II CATG 4 cut(s) 184, 227, 540, 991
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HinfI GANTC 2 cut(s) 49, 1031
HphI GGTGA 2 cut(s) 287, 328
Hpy166II GTNNAC 3 cut(s) 155, 278, 913
Hpy188I TCNGA 6 cut(s) 22, 78, 129, 597, 1028, 1085
Hpy188III TCNNGA 5 cut(s) 181, 233, 287, 656, 761
Hpy8I GTNNAC 3 cut(s) 155, 278, 913
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 521, 757
HpyCH4IV ACGT 1 cut(s) 915
HpyCH4V TGCA 7 cut(s) 99, 333, 396, 776, 800, 845, 1078
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 2 cut(s) 77, 548
HpySE526I ACGT 1 cut(s) 915
Hsp92II CATG 4 cut(s) 184, 227, 540, 991
Kzo9I GATC 4 cut(s) 124, 177, 253, 1021
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 1 cut(s) 855
LpnPI CCDG 7 cut(s) 17, 158, 305, 376, 403, 879, 1024
Lsp1109I GCAGC 1 cut(s) 781
LweI GCATC 4 cut(s) 342, 405, 787, 978
MabI ACCWGGT 1 cut(s) 389
MaeI CTAG 3 cut(s) 57, 354, 743
MaeII ACGT 1 cut(s) 915
MaeIII GTNAC 1 cut(s) 233
MalI GATC 4 cut(s) 126, 179, 255, 1023
MboI GATC 4 cut(s) 124, 177, 253, 1021
MboII GAAGA 7 cut(s) 263, 653, 704, 776, 823, 898, 932
MflI RGATCY 2 cut(s) 253, 1021
MhlI GDGCHC 2 cut(s) 840, 1058
MluCI AATT 4 cut(s) 413, 468, 659, 869
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 6 cut(s) 37, 240, 337, 720, 783, 991
Mph1103I ATGCAT 2 cut(s) 335, 802
MseI TTAA 4 cut(s) 206, 282, 300, 866
MslI CAYNNNNRTG 3 cut(s) 315, 721, 1051
MspR9I CCNGG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 1 cut(s) 574
NcoI CCATGG 1 cut(s) 223
NdeI CATATG 1 cut(s) 802
NdeII GATC 4 cut(s) 124, 177, 253, 1021
NlaIII CATG 4 cut(s) 184, 227, 540, 991
NlaIV GGNNCC 2 cut(s) 63, 371
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 2 cut(s) 335, 802
PagI TCATGA 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 759
PfeI GAWTC 2 cut(s) 49, 1031
PkrI GCNGC 2 cut(s) 500, 771
PsiI TTATAA 3 cut(s) 263, 624, 729
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 63, 371
PspPI GGNCC 2 cut(s) 227, 698
PsuI RGATCY 2 cut(s) 253, 1021
RseI CAYNNNNRTG 3 cut(s) 315, 721, 1051
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 4 cut(s) 206, 282, 300, 866
SatI GCNGC 2 cut(s) 499, 770
Sau3AI GATC 4 cut(s) 124, 177, 253, 1021
Sau96I GGNCC 2 cut(s) 227, 698
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 2 cut(s) 840, 1058
SetI ASST 9 cut(s) 134, 232, 277, 395, 774, 794, 860, 885, 918
SexAI ACCWGGT 1 cut(s) 389
SfaNI GCATC 4 cut(s) 342, 405, 787, 978
SfcI CTRYAG 1 cut(s) 517
SinI GGWCC 2 cut(s) 227, 698
SmiMI CAYNNNNRTG 3 cut(s) 315, 721, 1051
Sse9I AATT 4 cut(s) 413, 468, 659, 869
SsiI CCGC 2 cut(s) 499, 701
SspMI CTAG 3 cut(s) 57, 354, 743
StyD4I CCNGG 1 cut(s) 389
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 521, 757
TaiI ACGT 1 cut(s) 918
TaqI TCGA 1 cut(s) 408
TasI AATT 4 cut(s) 413, 468, 659, 869
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 2 cut(s) 49, 1031
Tru1I TTAA 4 cut(s) 206, 282, 300, 866
Tru9I TTAA 4 cut(s) 206, 282, 300, 866
TscAI CASTG 4 cut(s) 90, 783, 852, 939
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 769
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 299, 525, 597
TspRI CASTG 4 cut(s) 90, 783, 852, 939
VpaK11BI GGWCC 2 cut(s) 227, 698
XapI RAATTY 4 cut(s) 413, 468, 659, 869
XspI CTAG 3 cut(s) 57, 354, 743
Zsp2I ATGCAT 2 cut(s) 335, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.