AT3G18340

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6294018 .. 6295134
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18340.1

Sequence Viewer

Length: 1086 bp
ATGGCGTCGGGGAAGCTTCCGTGGGAGTTGGAGGAAGAGATATTGTGTCGGCTTCCACCTGGATCTCTTGTTCGGCTAAGATCCGTATGTAAACACTGGAACGATCTTTATAACGACAAATGGTTCATCAAGAAAAGCTTGGGTTTTGCACGTCCCCAATTCATCATCCTGGCCGGATTCAAGATTTATTCGATAGGAACCATCGGTCTGGACGTCGTTGATCCGAAGATAGAGGCTGAGAAGTGGGCATTTACCAGGATCACGGCTTGCAATGGATTATTGTTTCGTGACTTTTGGAACCAAGGGGTTACCATTTGGAATCCATGGTTAAGACAAGTTGGGTGGATTGAGTATAAGGAGGACAAAGATTTCCGTTTTTGCGGTATAGGATACGATGCTGGTAAACCCGAAAAGGGTTACAAGATCTTTGGGTATTTTAATCGTTTCTATGACACTAAACTGAAAATCGGCCACAGATTTGCGATCTTTGAATGTGCGTCTCAAGCGTTTAAGTTCATTGATTCCCCTGAATGGCCAACGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGAAATTTGTATTGGACTGCTTACAATGAAGATACTCGTGAGCATTTTCTTGGAAGCTTTGATTTCTCCACGGAAATATCCATGCACTTTTGTCTCCTTCCTTGTGCGAAGCATGTTTCTGGCTTACAAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCGGTTTGCATTGTTAAAGCAATCTCGTATATCAAGTAATACAGAGATTTGGGTAACAAAGGACAAGATTAACTCTAGTAATAACGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTGACTTTCCCTCGCTATTCCATCAGCTTTCTGATATTAGTTACTTCATCCATGACATGACCCTTATCCTGTGCTGTGACGACAATCAAACTGGAGTGGGTTGCATCTTTATTGCGAGGGGAGACTTGTGCAAGAAGATTCAAATAAATTATGTCTCTCTTGGGTTTTCTCAATGTGTCTATCTTCCAAGTTTGACCTCGGTTCCTTTGGAATTCAGATCACTGCAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

361

Amino Acids

41.63

Weight (kDa)

7.91

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 36 4.4e-08 F-box domain
F-box-like PF12937 5 - 40 2.2e-06 F-box-like
FBA_1 PF07734 53 - 352 3.8e-71 F-box associated beta propeller domain
FBA_3 PF08268 79 - 269 1.4e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AatII GACGTC 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 536
AciI CCGC 1 cut(s) 381
AclWI GGATC 4 cut(s) 70, 75, 215, 266
AcoI YGGCCR 3 cut(s) 171, 469, 533
AcsI RAATTY 2 cut(s) 577, 1064
AcyI GRCGYC 2 cut(s) 5, 213
AfiI CCNNNNNNNGG 2 cut(s) 413, 531
AgsI TTSAA 4 cut(s) 181, 491, 571, 995
AjiI CACGTC 1 cut(s) 152
AjnI CCWGG 3 cut(s) 58, 168, 254
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
AluBI AGCT 4 cut(s) 16, 138, 630, 880
AluI AGCT 4 cut(s) 16, 138, 630, 880
Alw26I GTCTC 4 cut(s) 504, 671, 969, 1012
AlwI GGATC 4 cut(s) 70, 75, 215, 266
AoxI GGCC 3 cut(s) 171, 469, 533
ApoI RAATTY 2 cut(s) 577, 1064
AsuHPI GGTGA 1 cut(s) 566
BalI TGGCCA 1 cut(s) 535
BauI CACGAG 1 cut(s) 609
BccI CCATC 2 cut(s) 209, 882
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 3 cut(s) 60, 170, 256
BciVI GTATCC 1 cut(s) 383
BcoDI GTCTC 4 cut(s) 504, 671, 969, 1012
BfaI CTAG 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 536
BfuI GTATCC 1 cut(s) 383
BglII AGATCT 1 cut(s) 423
Bme1390I CCNGG 3 cut(s) 60, 170, 256
BmgBI CACGTC 1 cut(s) 152
BmiI GGNNCC 3 cut(s) 199, 299, 1056
BmrFI CCNGG 3 cut(s) 60, 170, 256
BmsI GCATC 2 cut(s) 385, 966
BpmI CTGGAG 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 486
BsaHI GRCGYC 2 cut(s) 5, 213
BsaJI CCNNGG 5 cut(s) 20, 301, 323, 642, 1050
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 531
Bse1I ACTGG 2 cut(s) 101, 949
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 3 cut(s) 60, 170, 256
BseDI CCNNGG 5 cut(s) 20, 301, 323, 642, 1050
BseGI GGATG 2 cut(s) 165, 900
BseLI CCNNNNNNNGG 2 cut(s) 413, 531
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 101, 949
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 3 cut(s) 173, 471, 535
BsiEI CGRYCG 1 cut(s) 736
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 413, 531
BsmAI GTCTC 4 cut(s) 504, 671, 969, 1012
BsmBI CGTCTC 1 cut(s) 504
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 3 cut(s) 173, 471, 535
Bsp143I GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 1 cut(s) 381
BspANI GGCC 3 cut(s) 173, 471, 535
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 199, 299, 1056
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 4 cut(s) 70, 75, 215, 266
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 2 cut(s) 101, 949
BssECI CCNNGG 5 cut(s) 20, 301, 323, 642, 1050
BssMI GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
BssNI GRCGYC 2 cut(s) 5, 213
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 2 cut(s) 301, 323
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 3 cut(s) 60, 170, 256
Bst4CI ACNGT 2 cut(s) 721, 846
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 2 cut(s) 5, 213
BstC8I GCNNGC 2 cut(s) 268, 543
BstDEI CTNAG 2 cut(s) 77, 237
BstDSI CCRYGG 3 cut(s) 20, 323, 642
BstEII GGTNACC 1 cut(s) 307
BstF5I GGATG 2 cut(s) 165, 900
BstKTI GATC 9 cut(s) 65, 83, 106, 223, 261, 426, 486, 736, 1073
BstMAI GTCTC 4 cut(s) 504, 671, 969, 1012
BstMBI GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
BstMCI CGRYCG 1 cut(s) 736
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNI CCWGG 3 cut(s) 60, 170, 256
BstNSI RCATGY 1 cut(s) 689
BstPI GGTNACC 1 cut(s) 307
BstSCI CCNGG 3 cut(s) 58, 168, 254
BstX2I RGATCY 3 cut(s) 62, 80, 423
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 3 cut(s) 62, 80, 423
BsuI GTATCC 1 cut(s) 383
BsuRI GGCC 3 cut(s) 173, 471, 535
BtgI CCRYGG 3 cut(s) 20, 323, 642
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 2 cut(s) 165, 900
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 4 cut(s) 94, 717, 842, 1073
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 268, 543
CseI GACGC 1 cut(s) 486
CspCI CAANNNNNGTGG 2 cut(s) 323, 358
CviAII CATG 5 cut(s) 324, 655, 686, 905, 910
DdeI CTNAG 2 cut(s) 77, 237
DpnI GATC 9 cut(s) 64, 82, 105, 222, 260, 425, 485, 735, 1072
DpnII GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
EaeI YGGCCR 3 cut(s) 171, 469, 533
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 301, 323
Eco91I GGTNACC 1 cut(s) 307
EcoO65I GGTNACC 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 1064
EcoRII CCWGG 3 cut(s) 58, 168, 254
EcoT14I CCWWGG 2 cut(s) 301, 323
ErhI CCWWGG 2 cut(s) 301, 323
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 5 cut(s) 327, 658, 689, 908, 913
FalI AAGNNNNNCTT 4 cut(s) 122, 154, 693, 725
FaqI GGGAC 1 cut(s) 138
FatI CATG 5 cut(s) 323, 654, 685, 904, 909
FokI GGATG 2 cut(s) 152, 887
FspBI CTAG 1 cut(s) 810
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 3 cut(s) 173, 471, 535
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 486
Hin1I GRCGYC 2 cut(s) 5, 213
Hin1II CATG 5 cut(s) 327, 658, 689, 908, 913
HindIII AAGCTT 3 cut(s) 14, 136, 628
HinfI GANTC 4 cut(s) 177, 319, 521, 991
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 2 cut(s) 92, 404
Hpy188I TCNGA 3 cut(s) 225, 886, 1070
Hpy188III TCNNGA 5 cut(s) 130, 181, 209, 287, 611
Hpy8I GTNNAC 2 cut(s) 92, 404
Hpy99I CGWCG 2 cut(s) 10, 218
HpyAV CCTTC 1 cut(s) 680
HpyCH4III ACNGT 2 cut(s) 721, 846
HpyCH4IV ACGT 3 cut(s) 151, 213, 819
HpyCH4V TGCA 7 cut(s) 149, 270, 658, 743, 957, 984, 1078
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 2 cut(s) 77, 237
HpySE526I ACGT 3 cut(s) 151, 213, 819
Hsp92I GRCGYC 2 cut(s) 5, 213
Hsp92II CATG 5 cut(s) 327, 658, 689, 908, 913
Kzo9I GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
LweI GCATC 2 cut(s) 385, 966
MaeI CTAG 1 cut(s) 810
MaeII ACGT 3 cut(s) 151, 213, 819
MaeIII GTNAC 6 cut(s) 287, 307, 416, 787, 893, 929
MalI GATC 9 cut(s) 64, 82, 105, 222, 260, 425, 485, 735, 1072
MboI GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
MboII GAAGA 5 cut(s) 47, 238, 614, 1000, 1028
MflI RGATCY 3 cut(s) 62, 80, 423
MlsI TGGCCA 1 cut(s) 535
MluCI AATT 4 cut(s) 158, 577, 1000, 1064
MluNI TGGCCA 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 8 cut(s) 25, 226, 352, 545, 725, 874, 963, 1060
Mox20I TGGCCA 1 cut(s) 535
MscI TGGCCA 1 cut(s) 535
MseI TTAA 7 cut(s) 329, 438, 510, 726, 749, 804, 830
Msp20I TGGCCA 1 cut(s) 535
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 60, 170, 256
MvaI CCWGG 3 cut(s) 60, 170, 256
MwoI GCNNNNNNNGC 1 cut(s) 503
NcoI CCATGG 1 cut(s) 323
NdeII GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
NlaIII CATG 5 cut(s) 327, 658, 689, 908, 913
NlaIV GGNNCC 3 cut(s) 199, 299, 1056
NmuCI GTSAC 2 cut(s) 287, 929
NspI RCATGY 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 4 cut(s) 177, 319, 521, 991
PflFI GACNNNGTC 1 cut(s) 844
Ple19I CGATCG 1 cut(s) 736
PsiI TTATAA 1 cut(s) 111
Psp6I CCWGG 3 cut(s) 58, 168, 254
PspEI GGTNACC 1 cut(s) 307
PspGI CCWGG 3 cut(s) 58, 168, 254
PspN4I GGNNCC 3 cut(s) 199, 299, 1056
PsuI RGATCY 3 cut(s) 62, 80, 423
PsyI GACNNNGTC 1 cut(s) 844
PvuI CGATCG 1 cut(s) 736
SaqAI TTAA 7 cut(s) 329, 438, 510, 726, 749, 804, 830
Sau3AI GATC 9 cut(s) 62, 80, 103, 220, 258, 423, 483, 733, 1070
ScrFI CCNGG 3 cut(s) 60, 170, 256
SfaNI GCATC 2 cut(s) 385, 966
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
Sse9I AATT 4 cut(s) 158, 577, 1000, 1064
SsiI CCGC 1 cut(s) 381
SspMI CTAG 1 cut(s) 810
StyD4I CCNGG 3 cut(s) 58, 168, 254
StyI CCWWGG 2 cut(s) 301, 323
TaaI ACNGT 2 cut(s) 721, 846
TaiI ACGT 3 cut(s) 154, 216, 822
TaqI TCGA 2 cut(s) 191, 550
TaqII GACCGA 1 cut(s) 194
TasI AATT 4 cut(s) 158, 577, 1000, 1064
TfiI GAWTC 4 cut(s) 177, 319, 521, 991
Tru1I TTAA 7 cut(s) 329, 438, 510, 726, 749, 804, 830
Tru9I TTAA 7 cut(s) 329, 438, 510, 726, 749, 804, 830
TscAI CASTG 4 cut(s) 101, 724, 849, 1080
TseFI GTSAC 2 cut(s) 287, 929
Tsp45I GTSAC 2 cut(s) 287, 929
TspDTI ATGAA 5 cut(s) 115, 151, 505, 615, 889
TspGWI ACGGA 4 cut(s) 9, 73, 362, 659
TspRI CASTG 4 cut(s) 101, 724, 849, 1080
Tth111I GACNNNGTC 1 cut(s) 844
XapI RAATTY 2 cut(s) 577, 1064
XceI RCATGY 1 cut(s) 689
XspI CTAG 1 cut(s) 810
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.