AT1G11620

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
3910833 .. 3911924
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11620.1

Sequence Viewer

Length: 1092 bp
ATGGCTACAATGGATCTTTCGTCTGATTTGGTAGAGGAGATACTCTCACGGGTTCCAGCGAGATCTCTTGTACGATTGAGATCCACATGCAAGCAGTGGGAAGCCCTAATCGCAGAGCCGAGATTCGTCAACAAGCACTTGTCTCACATGCGTTACCGTGAGCAACAATTCACAGTCTTTAACAACGAACACATAGTTTCTCCTTTGTTCGGTTCCACAACTTCTTATGTAGGTATCGATTTCAACAAACCAGAAAATTGTGGTGTGAAATTGCCTTTTCCAATAGCTCTTTCACCAGCGATCAATATATCTCATTGTGACGGTCTATTGCTATACGTCACTAAAAGTATGCTTTTGGTTGCGAATCCGTTGTTGAGTCAAAAGAGATGGATTAAATGTAGCGAAGGGTTTGACCATTCCATGGACGCGTATGGTCTTGGATACCTTTTTAACCAATCATCAGGTTTTTATGATTACAAAGTTGTAAGATTTCGTTGTGGAATTAAAAATTCATCAAGGGTAGAAGTCTACGCATTCAAGTCTGATTCTTGGAAGGTTGTTGTTGATACAAACTTTGGTGGATTCGATGGATTGCCATTGTCAAGTGTTTGTTTGCGAGGAACTCCTTATTGGCTAGGTTACAATAAATCTGGTAATGAACTCATGTCGATACAGAGTTTCGATTTCTCAAAAGAGAGATTTGAGCCCTTGTTTCTTCCTCCTCAATCCATTGGGTCACGTAATTTGGTAAAGTATATCTCTTTAGGGATTTTCAGAGGAGATCAACTTTCTTTGTTACTTGAATGCCACGAAACATGTAAGTTACACTTATGGGTGATGAAGAAGCAGCATTGGAGCAGGCTGATGACAGTTGATGTACCTCAAGATGCGATATATGGAAAATATTTCAGTTCCTTCATTGAGAGAAATGGTAGGCTTGCATTATTGATCAAAAGCAGGAATATTAGCATCTACATTGGGGGAGAGAATCAAGAATTCAAAAGATTTGAATACTTCACTGGTCTTGGTCCCATGCTCAGTGATTGCTGCTATATTCAGAGCTTGCTTCAGATTCCAGGCTTTTCGAGATGA

Protein Analysis

363

Amino Acids

41.55

Weight (kDa)

8.89

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 42 5.4e-09 F-box domain
FBA_3 PF08268 101 - 290 3.5e-10 F-box associated beta propeller domain
FBA_1 PF07734 102 - 358 3e-57 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 421
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 428
AclWI GGATC 2 cut(s) 21, 75
AcsI RAATTY 2 cut(s) 508, 995
AcuI CTGAAG 1 cut(s) 1052
AfaI GTAC 2 cut(s) 72, 879
AfiI CCNNNNNNNGG 2 cut(s) 209, 421
AflIII ACRYGT 2 cut(s) 426, 815
AgsI TTSAA 5 cut(s) 244, 538, 803, 1000, 1010
AjnI CCWGG 1 cut(s) 1075
AjuI GAANNNNNNNTTGG 4 cut(s) 274, 306, 613, 645
AluBI AGCT 2 cut(s) 287, 1062
AluI AGCT 2 cut(s) 287, 1062
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 2 cut(s) 21, 75
ApeKI GCWGC 2 cut(s) 847, 1047
ApoI RAATTY 2 cut(s) 508, 995
AspS9I GGNCC 1 cut(s) 1028
AsuHPI GGTGA 2 cut(s) 285, 847
AvaII GGWCC 1 cut(s) 1028
BanII GRGCYC 1 cut(s) 708
BbvI GCAGC 2 cut(s) 859, 1034
BccI CCATC 2 cut(s) 381, 581
BciT130I CCWGG 1 cut(s) 1077
BciVI GTATCC 1 cut(s) 434
BclI TGATCA 1 cut(s) 948
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 635
BfuI GTATCC 1 cut(s) 434
BglII AGATCT 1 cut(s) 62
BisI GCNGC 2 cut(s) 848, 1048
BlsI GCNGC 2 cut(s) 849, 1049
Bme1390I CCNGG 1 cut(s) 1077
Bme18I GGWCC 1 cut(s) 1028
BmgT120I GGNCC 1 cut(s) 1028
BmiI GGNNCC 3 cut(s) 54, 214, 1030
BmrFI CCNGG 1 cut(s) 1077
BmsI GCATC 2 cut(s) 877, 978
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 1 cut(s) 867
Bsa29I ATCGAT 1 cut(s) 237
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 421
Bse1I ACTGG 1 cut(s) 1024
Bse8I GATNNNNATC 1 cut(s) 79
BseBI CCWGG 1 cut(s) 1077
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 420
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 209, 421
BseMII CTCAG 1 cut(s) 1051
BseNI ACTGG 1 cut(s) 1024
BseRI GAGGAG 3 cut(s) 50, 711, 792
BseXI GCAGC 2 cut(s) 859, 1034
Bsh1236I CGCG 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 237
BslFI GGGAC 1 cut(s) 1014
BslI CCNNNNNNNGG 2 cut(s) 209, 421
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 1014
BsmI GAATGC 2 cut(s) 533, 809
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 6 cut(s) 13, 62, 80, 300, 781, 948
Bsp19I CCATGG 1 cut(s) 420
BspCNI CTCAG 1 cut(s) 1050
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 428
BspLI GGNNCC 3 cut(s) 54, 214, 1030
BspPI GGATC 2 cut(s) 21, 75
BsrI ACTGG 1 cut(s) 1024
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 6 cut(s) 13, 62, 80, 300, 781, 948
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 1077
Bst4CI ACNGT 4 cut(s) 158, 175, 323, 871
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 4 cut(s) 92, 860, 939, 1064
BstDEI CTNAG 1 cut(s) 1037
BstDSI CCRYGG 1 cut(s) 420
BstFNI CGCG 1 cut(s) 428
BstKTI GATC 6 cut(s) 16, 65, 83, 303, 784, 951
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 6 cut(s) 13, 62, 80, 300, 781, 948
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 1077
BstNSI RCATGY 3 cut(s) 90, 151, 819
BstSCI CCNGG 1 cut(s) 1075
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 2 cut(s) 859, 1034
BstX2I RGATCY 3 cut(s) 13, 62, 80
BstYI RGATCY 3 cut(s) 13, 62, 80
Bsu15I ATCGAT 1 cut(s) 237
BsuI GTATCC 1 cut(s) 434
BsuTUI ATCGAT 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 3 cut(s) 101, 1017, 1045
Cac8I GCNNGC 4 cut(s) 92, 860, 939, 1064
Cfr13I GGNCC 1 cut(s) 1028
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 434
Csp6I GTAC 2 cut(s) 71, 878
CviAII CATG 6 cut(s) 87, 148, 421, 664, 816, 1033
CviQI GTAC 2 cut(s) 71, 878
DdeI CTNAG 1 cut(s) 1037
DpnI GATC 6 cut(s) 15, 64, 82, 302, 783, 950
DpnII GATC 6 cut(s) 13, 62, 80, 300, 781, 948
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 708
Eco47I GGWCC 1 cut(s) 1028
Eco57I CTGAAG 1 cut(s) 1052
EcoRI GAATTC 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 1075
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 6 cut(s) 90, 151, 424, 667, 819, 1036
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 1 cut(s) 1014
FatI CATG 6 cut(s) 86, 147, 420, 663, 815, 1032
FbaI TGATCA 1 cut(s) 948
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 2 cut(s) 848, 1048
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 2 cut(s) 848, 1048
FspBI CTAG 1 cut(s) 635
GluI GCNGC 2 cut(s) 848, 1048
HgaI GACGC 1 cut(s) 434
Hin1II CATG 6 cut(s) 90, 151, 424, 667, 819, 1036
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 7 cut(s) 123, 364, 376, 545, 582, 988, 1072
HphI GGTGA 2 cut(s) 285, 847
Hpy166II GTNNAC 2 cut(s) 130, 529
Hpy188I TCNGA 5 cut(s) 25, 544, 776, 1059, 1071
Hpy188III TCNNGA 3 cut(s) 884, 992, 1086
Hpy8I GTNNAC 2 cut(s) 130, 529
HpyAV CCTTC 3 cut(s) 398, 547, 925
HpyCH4III ACNGT 4 cut(s) 158, 175, 323, 871
HpyCH4IV ACGT 2 cut(s) 336, 739
HpyCH4V TGCA 2 cut(s) 90, 941
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 1037
HpySE526I ACGT 2 cut(s) 336, 739
Hsp92II CATG 6 cut(s) 90, 151, 424, 667, 819, 1036
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 6 cut(s) 13, 62, 80, 300, 781, 948
LmnI GCTCC 1 cut(s) 855
LpnPI CCDG 9 cut(s) 69, 264, 309, 447, 636, 844, 943, 1005, 1062
Lsp1109I GCAGC 2 cut(s) 859, 1034
LweI GCATC 2 cut(s) 877, 978
MaeI CTAG 1 cut(s) 635
MaeII ACGT 2 cut(s) 336, 739
MaeIII GTNAC 7 cut(s) 152, 317, 337, 638, 735, 795, 822
MalI GATC 6 cut(s) 15, 64, 82, 302, 783, 950
MboI GATC 6 cut(s) 13, 62, 80, 300, 781, 948
MboII GAAGA 2 cut(s) 707, 853
MflI RGATCY 3 cut(s) 13, 62, 80
MhlI GDGCHC 1 cut(s) 708
MluCI AATT 7 cut(s) 167, 256, 269, 501, 508, 742, 995
MluI ACGCGT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 6 cut(s) 28, 611, 729, 732, 770, 891
MseI TTAA 4 cut(s) 180, 393, 450, 504
MspR9I CCNGG 1 cut(s) 1077
Mva1269I GAATGC 2 cut(s) 533, 809
MvaI CCWGG 1 cut(s) 1077
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 420
NdeII GATC 6 cut(s) 13, 62, 80, 300, 781, 948
NlaIII CATG 6 cut(s) 90, 151, 424, 667, 819, 1036
NlaIV GGNNCC 3 cut(s) 54, 214, 1030
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 3 cut(s) 317, 337, 735
NspI RCATGY 3 cut(s) 90, 151, 819
PciI ACATGT 1 cut(s) 815
PctI GAATGC 2 cut(s) 533, 809
PfeI GAWTC 6 cut(s) 123, 364, 545, 582, 988, 1072
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 2 cut(s) 849, 1049
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Ppu21I YACGTR 1 cut(s) 740
PscI ACATGT 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 1075
PspGI CCWGG 1 cut(s) 1075
PspN4I GGNNCC 3 cut(s) 54, 214, 1030
PspPI GGNCC 1 cut(s) 1028
PsuI RGATCY 3 cut(s) 13, 62, 80
RsaI GTAC 2 cut(s) 72, 879
RsaNI GTAC 2 cut(s) 71, 878
SaqAI TTAA 4 cut(s) 180, 393, 450, 504
SatI GCNGC 2 cut(s) 848, 1048
Sau3AI GATC 6 cut(s) 13, 62, 80, 300, 781, 948
Sau96I GGNCC 1 cut(s) 1028
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 1077
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 2 cut(s) 877, 978
SinI GGWCC 1 cut(s) 1028
SmlI CTYRAG 1 cut(s) 882
SmoI CTYRAG 1 cut(s) 882
Sse9I AATT 7 cut(s) 167, 256, 269, 501, 508, 742, 995
SspI AATATT 2 cut(s) 905, 964
SspMI CTAG 1 cut(s) 635
StyD4I CCNGG 1 cut(s) 1075
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 4 cut(s) 158, 175, 323, 871
TaiI ACGT 2 cut(s) 339, 742
TaqI TCGA 5 cut(s) 237, 585, 668, 681, 1085
TasI AATT 7 cut(s) 167, 256, 269, 501, 508, 742, 995
TfiI GAWTC 6 cut(s) 123, 364, 545, 582, 988, 1072
Tru1I TTAA 4 cut(s) 180, 393, 450, 504
Tru9I TTAA 4 cut(s) 180, 393, 450, 504
TscAI CASTG 3 cut(s) 101, 1024, 1045
TseFI GTSAC 3 cut(s) 317, 337, 735
TseI GCWGC 2 cut(s) 847, 1047
Tsp45I GTSAC 3 cut(s) 317, 337, 735
TspDTI ATGAA 4 cut(s) 501, 672, 854, 907
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 3 cut(s) 101, 1024, 1045
Van91I CCANNNNNTGG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 1028
XapI RAATTY 2 cut(s) 508, 995
XceI RCATGY 3 cut(s) 90, 151, 819
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.