AT3G16580

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
5647376 .. 5648746
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16580.1

Sequence Viewer

Length: 1149 bp
ATGGCTCATGAGGAGAAGCGCCCATGGGAGTTTTCTTTATCTCTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCAGAATCTCTTCTTCGCTTCAAAACCGTATCGAAACAATGGAACGCTCTCTTCCGCGATAAGACGTTCATCAATAACCACAAGATGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCATCGATCCCAAGATAGTTGTGCGTGAGTTAACCTTAGATATTCCCGGTTTAGAATCTCATGAGATACCTAAAAAATTGGTTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAGTTGTGCTTTGGAACCCGTGGCTGAGACATAGTACATGGATCGACCAGGGTTCAAACCACACTCGAATGGAGTCTTATGGCATAGGATACAACAATAAGGGGAGTTACAAGATCTTTGCTTTTTGTGATCGGAAGGAAAACCACACCCAGAGATTGTTGACAATCCATGACTCTGCCTCTGATGCGTGGAAAGACCGCGAGCCTATTGATAATAGTCAGGGAAAACAAATTGTTCATAACATATACACTAAAATTAGTGGTGTATCATTGAATGGAAATTTGTATTTGGTTACTTATTTTGAAACGACTGATCTCGTGTACCACCTAATTGAAATCAATTCTTCGAGCGAAAGCGTCGTGAAGTTTTGTGATCTACCATGTGGGACGTCGAACTTTCTTAAGGATGCTTTCGTCCTTAGGGTTTTCGAGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGATTGAGATTTGGGTGAGCAAGTACAAGATTAATAATAATCTTGATAGAGATGTGGAATGGATAAAGTTCATGGAAGTTTCAAGTCCTAACTTGCCGGATTTAGTAGATGGATTCGACTCTCAGCCAAGTTACTTTATTGAAGATAAAAGGCTCGTCGTGTGCTCGTGCAACGAAACTGGTCGGGCTTGGATCTATGTTTTCGGAGAAAATAAGTTGATCAGTAAAACTCAAATTGATTCTGTGGTGGATCTTTGGCCTTCACACTGGACCTTTATTCCCAGTTTGGTACCGGTTCCTCGAGCTCAAAGAGAAGAACCAGCAGAATTACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

382

Amino Acids

44.41

Weight (kDa)

6.28

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 51 4.5e-10 F-box domain
F-box-like PF12937 14 - 49 2.6e-06 F-box-like
FBA_1 PF07734 61 - 369 8.3e-74 F-box associated beta propeller domain
FBA_3 PF08268 72 - 333 5.1e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 728
Acc65I GGTACC 1 cut(s) 1099
AccB1I GGYRCC 1 cut(s) 1099
AccII CGCG 2 cut(s) 141, 537
AciI CCGC 2 cut(s) 139, 535
AclWI GGATC 4 cut(s) 218, 386, 1010, 1068
AcsI RAATTY 1 cut(s) 616
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 4 cut(s) 373, 659, 836, 1101
AflII CTTAAG 1 cut(s) 737
AgeI ACCGGT 1 cut(s) 1102
AgsI TTSAA 8 cut(s) 62, 106, 393, 610, 641, 671, 894, 953
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 1 cut(s) 1115
AluI AGCT 1 cut(s) 1115
Alw21I GWGCWC 2 cut(s) 977, 1117
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 4 cut(s) 218, 386, 1010, 1068
Ama87I CYCGRG 1 cut(s) 1110
AoxI GGCC 1 cut(s) 1067
ApoI RAATTY 1 cut(s) 616
AseI ATTAAT 1 cut(s) 843
AsiGI ACCGGT 1 cut(s) 1102
Asp700I GAANNNNTTC 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 1099
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 1080
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 838
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 1 cut(s) 1080
AxyI CCTNAGG 1 cut(s) 755
BanI GGYRCC 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 1117
BauI CACGAG 3 cut(s) 75, 653, 976
Bbv12I GWGCWC 2 cut(s) 977, 1117
BccI CCATC 1 cut(s) 914
BciT130I CCWGG 1 cut(s) 386
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 1029
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 358
BfoI RGCGCY 1 cut(s) 22
BfrI CTTAAG 1 cut(s) 737
BfuI GTATCC 1 cut(s) 419
BglII AGATCT 1 cut(s) 450
Bme1390I CCNGG 2 cut(s) 264, 386
Bme18I GGWCC 1 cut(s) 1080
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 1 cut(s) 1080
BmiI GGNNCC 3 cut(s) 353, 1101, 1107
BmrFI CCNGG 2 cut(s) 264, 386
BmrI ACTGGG 1 cut(s) 1086
BmsI GCATC 3 cut(s) 228, 511, 733
BmuI ACTGGG 1 cut(s) 1086
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BpuMI CCSGG 1 cut(s) 264
Bsa29I ATCGAT 2 cut(s) 222, 775
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 4 cut(s) 23, 47, 356, 385
BsaWI WCCGGW 1 cut(s) 1102
Bse118I RCCGGY 1 cut(s) 1102
Bse1I ACTGG 3 cut(s) 994, 1082, 1092
Bse21I CCTNAGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 800
BseBI CCWGG 1 cut(s) 386
BseCI ATCGAT 2 cut(s) 222, 775
BseDI CCNNGG 4 cut(s) 23, 47, 356, 385
BseGI GGATG 1 cut(s) 748
BseMI GCAATG 1 cut(s) 800
BseMII CTCAG 2 cut(s) 353, 947
BseNI ACTGG 3 cut(s) 994, 1082, 1092
BseRI GAGGAG 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 141, 537
BshFI GGCC 1 cut(s) 1069
BshNI GGYRCC 1 cut(s) 1099
BshTI ACCGGT 1 cut(s) 1102
BshVI ATCGAT 2 cut(s) 222, 775
BsiHKAI GWGCWC 2 cut(s) 977, 1117
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 3 cut(s) 264, 908, 1103
BslFI GGGAC 2 cut(s) 65, 736
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 2 cut(s) 65, 736
BsnI GGCC 1 cut(s) 1069
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 2 cut(s) 977, 1117
Bsp19I CCATGG 2 cut(s) 23, 47
BspACI CCGC 2 cut(s) 139, 535
BspANI GGCC 1 cut(s) 1069
BspCNI CTCAG 2 cut(s) 354, 946
BspDI ATCGAT 2 cut(s) 222, 775
BspFNI CGCG 2 cut(s) 141, 537
BspHI TCATGA 2 cut(s) 7, 277
BspLI GGNNCC 3 cut(s) 353, 1101, 1107
BspPI GGATC 4 cut(s) 218, 386, 1010, 1068
BspT107I GGYRCC 1 cut(s) 1099
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 1102
BsrI ACTGG 3 cut(s) 994, 1082, 1092
BssAI RCCGGY 1 cut(s) 1102
BssECI CCNNGG 4 cut(s) 23, 47, 356, 385
BssNI GRCGYC 1 cut(s) 725
BssSI CACGAG 3 cut(s) 75, 653, 976
BssT1I CCWWGG 2 cut(s) 23, 47
Bst2BI CACGAG 3 cut(s) 75, 653, 976
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 4 cut(s) 48, 57, 99, 140
BstACI GRCGYC 1 cut(s) 725
BstAFI CTTAAG 1 cut(s) 737
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 5 cut(s) 187, 253, 362, 755, 933
BstDSI CCRYGG 3 cut(s) 23, 47, 356
BstF5I GGATG 1 cut(s) 748
BstFNI CGCG 2 cut(s) 141, 537
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 358
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 262, 384
BstUI CGCG 2 cut(s) 141, 537
BstX2I RGATCY 3 cut(s) 450, 1002, 1060
BstYI RGATCY 3 cut(s) 450, 1002, 1060
Bsu15I ATCGAT 2 cut(s) 222, 775
Bsu36I CCTNAGG 1 cut(s) 755
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 1069
BsuTUI ATCGAT 2 cut(s) 222, 775
BtgI CCRYGG 3 cut(s) 23, 47, 356
BtsCI GGATG 1 cut(s) 748
BtsIMutI CAGTG 1 cut(s) 1075
Cac8I GCNNGC 1 cut(s) 539
CciI TCATGA 2 cut(s) 7, 277
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 1102
Cfr13I GGNCC 1 cut(s) 1080
ClaI ATCGAT 2 cut(s) 222, 775
CseI GACGC 1 cut(s) 682
Csp6I GTAC 4 cut(s) 372, 658, 835, 1100
CspAI ACCGGT 1 cut(s) 1102
CviJI RGCY 8 cut(s) 5, 361, 541, 937, 964, 998, 1069, 1115
CviKI_1 RGCY 8 cut(s) 5, 361, 541, 937, 964, 998, 1069, 1115
CviQI GTAC 4 cut(s) 372, 658, 835, 1100
DdeI CTNAG 5 cut(s) 187, 253, 362, 755, 933
Eam1104I CTCTTC 4 cut(s) 48, 57, 99, 140
EarI CTCTTC 4 cut(s) 48, 57, 99, 140
Ecl136II GAGCTC 1 cut(s) 1115
Eco130I CCWWGG 2 cut(s) 23, 47
Eco24I GRGCYC 1 cut(s) 1117
Eco47I GGWCC 1 cut(s) 1080
Eco53kI GAGCTC 1 cut(s) 1115
Eco81I CCTNAGG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 1110
EcoICRI GAGCTC 1 cut(s) 1115
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 23, 47
EcoT38I GRGCYC 1 cut(s) 1117
ErhI CCWWGG 2 cut(s) 23, 47
FaqI GGGAC 2 cut(s) 65, 736
FbaI TGATCA 1 cut(s) 1029
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 1117
GlaI GCGC 1 cut(s) 20
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 1 cut(s) 1069
HapII CCGG 3 cut(s) 264, 908, 1103
HgaI GACGC 1 cut(s) 682
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 725
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 2 cut(s) 249, 498
HindII GTYRAC 2 cut(s) 249, 498
HinfI GANTC 8 cut(s) 89, 180, 272, 410, 509, 924, 929, 1049
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 3 cut(s) 264, 908, 1103
HphI GGTGA 1 cut(s) 838
Hpy166II GTNNAC 3 cut(s) 249, 498, 658
Hpy188I TCNGA 3 cut(s) 471, 520, 1016
Hpy188III TCNNGA 4 cut(s) 8, 278, 697, 854
Hpy8I GTNNAC 3 cut(s) 249, 498, 658
Hpy99I CGWCG 3 cut(s) 698, 730, 971
HpyAV CCTTC 2 cut(s) 466, 1080
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 3 cut(s) 149, 173, 725
HpyCH4V TGCA 2 cut(s) 803, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 5 cut(s) 187, 253, 362, 755, 933
HpySE526I ACGT 3 cut(s) 149, 173, 725
Hsp92I GRCGYC 1 cut(s) 725
HspAI GCGC 1 cut(s) 19
KpnI GGTACC 1 cut(s) 1103
Ksp22I TGATCA 1 cut(s) 1029
KspAI GTTAAC 1 cut(s) 249
LweI GCATC 3 cut(s) 228, 511, 733
MaeII ACGT 3 cut(s) 149, 173, 725
MaeIII GTNAC 4 cut(s) 323, 443, 628, 941
MboII GAAGA 9 cut(s) 35, 74, 86, 89, 127, 672, 823, 965, 1136
MflI RGATCY 3 cut(s) 450, 1002, 1060
MhlI GDGCHC 2 cut(s) 977, 1117
MluCI AATT 8 cut(s) 293, 567, 591, 616, 666, 676, 1044, 1136
MlyI GAGTC 3 cut(s) 419, 503, 923
MnlI CCTC 4 cut(s) 4, 526, 760, 1119
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 4 cut(s) 248, 738, 788, 843
MslI CAYNNNNRTG 1 cut(s) 404
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 3 cut(s) 264, 908, 1103
MspR9I CCNGG 2 cut(s) 264, 386
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 2 cut(s) 141, 537
MwoI GCNNNNNNNGC 1 cut(s) 521
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 2 cut(s) 23, 47
NlaIV GGNNCC 3 cut(s) 353, 1101, 1107
NmuCI GTSAC 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 1110
PagI TCATGA 2 cut(s) 7, 277
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 5 cut(s) 89, 180, 272, 924, 1049
PinAI ACCGGT 1 cut(s) 1102
PleI GAGTC 3 cut(s) 418, 503, 923
PpsI GAGTC 3 cut(s) 418, 503, 923
PshBI ATTAAT 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 1117
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 3 cut(s) 353, 1101, 1107
PspPI GGNCC 1 cut(s) 1080
PspXI VCTCGAGB 1 cut(s) 1110
PsuI RGATCY 3 cut(s) 450, 1002, 1060
RsaI GTAC 4 cut(s) 373, 659, 836, 1101
RsaNI GTAC 4 cut(s) 372, 658, 835, 1100
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 1117
SaqAI TTAA 4 cut(s) 248, 738, 788, 843
Sau96I GGNCC 1 cut(s) 1080
SchI GAGTC 3 cut(s) 419, 503, 923
ScrFI CCNGG 2 cut(s) 264, 386
SduI GDGCHC 2 cut(s) 977, 1117
SetI ASST 8 cut(s) 152, 176, 254, 289, 666, 728, 1085, 1117
SfaNI GCATC 3 cut(s) 228, 511, 733
Sfr274I CTCGAG 1 cut(s) 1110
SinI GGWCC 1 cut(s) 1080
SlaI CTCGAG 1 cut(s) 1110
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 737, 1110
SmoI CTYRAG 2 cut(s) 737, 1110
Sse9I AATT 8 cut(s) 293, 567, 591, 616, 666, 676, 1044, 1136
SsiI CCGC 2 cut(s) 139, 535
SstI GAGCTC 1 cut(s) 1117
StyD4I CCNGG 2 cut(s) 262, 384
StyI CCWWGG 2 cut(s) 23, 47
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 3 cut(s) 152, 176, 728
TasI AATT 8 cut(s) 293, 567, 591, 616, 666, 676, 1044, 1136
TatI WGTACW 2 cut(s) 371, 834
TfiI GAWTC 5 cut(s) 89, 180, 272, 924, 1049
Tru1I TTAA 4 cut(s) 248, 738, 788, 843
Tru9I TTAA 4 cut(s) 248, 738, 788, 843
TscAI CASTG 1 cut(s) 1082
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 5 cut(s) 142, 172, 563, 771, 871
TspRI CASTG 1 cut(s) 1082
Vha464I CTTAAG 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 1080
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 1 cut(s) 616
XhoI CTCGAG 1 cut(s) 1110
XmnI GAANNNNTTC 1 cut(s) 93
ZraI GACGTC 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.