AT5G41510

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Forward (+)
16607124 .. 16608326
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41510.1

Sequence Viewer

Length: 1203 bp
ATGGCGACGATGATCTCCAATCTTCCAAGGGATTTGATAGAGGAGATTTTTTCTAGGGTTCCCTTGACATCTATGAAAGCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCTAAAAGTGAGAGCTTTACGAAGGTGCACATTGGTAGAGCAGCAACAAGAGAAGAGAAGACTATGATAGTCGATGTGATGCCTCACAAACTTAATTTAATGAGTATTGTCATCGACGACGTTACTCCATCTGCAGAGTTTAAAGGTCAGTTTAGTTTACTTCACAAGAACTACCGTATAAATCAAGTCTTACACTATGAGGGTTTGTTGTTATGCATTATGAAAGATCCTACTAGGATTGTGGTTTGGAATCCGTATTTGGGACAAACAAGGTGGATCCAACTCAGGTATTTTCACCGTCCACATGGAATAGACCATTTCAGATATGCTCTCGGATACGCGGATAAGGAATCTTGTAGTAGCCTTAAATTCTTAAGGTTTTTAGATTATTTCTACAAAGCACCCGAAGAGGAATTTTTTTGGTATGAAATCTACGATTTTGACTCTGGTTTATGGACAACTCTTAATGTCACTCCACACTGGGGTATTTATTCGACTTGCCCTTGTGTTTCCCTTAAGGGAAACACTTACTGGCCTGCTAAAGAAAGGAGCACACAAGGTTTCCAAGATTATATAATCCGTTTCGATTTTACAAGAGAGAGATTTGGACCCCTTCTAGCTCTGCCTACGGATCGTGAATCTTCATTTGTGAGTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTAAGCACCGGCTGCACCATGATTCATACGAATATGAGTTTGAGATATGGATTACGACTAAGATTGAGGTCGAAATGGTTTCGTGGAGCAAGTTCTTGAGAATGGATATGAGACCTAAGATGGAGCTTCCACTTACTTTCTACATTGACGAAGAGAAGAAAGTTTTCATGGGATTTGATCATGGAGAATATCCCAAGTTATTATTTCTTAACGTCGTTGGAGAGACTGGATTCTTAAGAAAATTCGAGAATATCCAATACCGTTCGCCATGCTCTTATGTTCCAAGTTTGGTCCAAGTCAAGAAACTTGCACGAGACAGACTGAGAAAACAACGTAGTTTAGAAAACCGTCGATTTGCTCAAAACATTTTGAGACTTGCGCGCAATGGAAAAAGCTAA

Protein Analysis

400

Amino Acids

47.48

Weight (kDa)

9.15

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 45 3.3e-10 F-box domain
F-box-like PF12937 5 - 43 1.2e-06 F-box-like
FBA_1 PF07734 62 - 368 7.3e-96 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 455, 1186
AciI CCGC 1 cut(s) 455
AclWI GGATC 4 cut(s) 335, 385, 398, 753
AcsI RAATTY 3 cut(s) 482, 527, 1046
AfiI CCNNNNNNNGG 2 cut(s) 374, 596
AflII CTTAAG 3 cut(s) 487, 629, 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 6 cut(s) 129, 734, 793, 800, 931, 1200
AluI AGCT 6 cut(s) 129, 734, 793, 800, 931, 1200
Alw21I GWGCWC 2 cut(s) 144, 668
Alw26I GTCTC 4 cut(s) 910, 1022, 1113, 1171
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 4 cut(s) 335, 385, 398, 753
AoxI GGCC 1 cut(s) 647
ApaLI GTGCAC 1 cut(s) 140
ApeKI GCWGC 3 cut(s) 155, 797, 817
ApoI RAATTY 3 cut(s) 482, 527, 1046
Asp700I GAANNNNTTC 1 cut(s) 968
AspLEI GCGC 2 cut(s) 1186, 1188
AspS9I GGNCC 2 cut(s) 722, 1096
AsuHPI GGTGA 1 cut(s) 401
AvaII GGWCC 2 cut(s) 722, 1096
BaeGI GKGCMC 1 cut(s) 144
BamHI GGATCC 1 cut(s) 390
BauI CACGAG 1 cut(s) 1116
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 144, 668
BbvI GCAGC 3 cut(s) 167, 804, 809
BccI CCATC 2 cut(s) 250, 919
BciVI GTATCC 1 cut(s) 443
BclI TGATCA 1 cut(s) 982
BcoDI GTCTC 4 cut(s) 910, 1022, 1113, 1171
BfaI CTAG 3 cut(s) 54, 348, 731
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 3 cut(s) 487, 629, 1039
BfuI GTATCC 1 cut(s) 443
BisI GCNGC 3 cut(s) 156, 798, 818
BlsI GCNGC 3 cut(s) 157, 799, 819
Bme18I GGWCC 2 cut(s) 722, 1096
BmgT120I GGNCC 2 cut(s) 722, 1096
BmiI GGNNCC 3 cut(s) 60, 392, 724
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 922
BsaI GGTCTC 1 cut(s) 910
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 596
Bse118I RCCGGY 1 cut(s) 813
Bse1I ACTGG 3 cut(s) 599, 650, 1036
Bse3DI GCAATG 1 cut(s) 1195
BseDI CCNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 374, 596
BseMI GCAATG 1 cut(s) 1195
BseMII CTCAG 2 cut(s) 412, 1118
BseNI ACTGG 3 cut(s) 599, 650, 1036
BsePI GCGCGC 1 cut(s) 1184
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 3 cut(s) 167, 804, 809
BsgI GTGCAG 1 cut(s) 803
Bsh1236I CGCG 2 cut(s) 455, 1186
BshFI GGCC 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 144, 668
BsiSI CCGG 1 cut(s) 814
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 374, 596
BsmAI GTCTC 4 cut(s) 910, 1022, 1113, 1171
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 1 cut(s) 649
Bso31I GGTCTC 1 cut(s) 910
Bsp1286I GDGCHC 2 cut(s) 144, 668
Bsp143I GATC 5 cut(s) 12, 340, 390, 745, 982
BspACI CCGC 1 cut(s) 455
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 2 cut(s) 411, 1119
BspFNI CGCG 2 cut(s) 455, 1186
BspLI GGNNCC 3 cut(s) 60, 392, 724
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 4 cut(s) 335, 385, 398, 753
BspTI CTTAAG 3 cut(s) 487, 629, 1039
BspTNI GGTCTC 1 cut(s) 910
BsrDI GCAATG 1 cut(s) 1195
BsrFI RCCGGY 1 cut(s) 813
BsrI ACTGG 3 cut(s) 599, 650, 1036
BssAI RCCGGY 1 cut(s) 813
BssECI CCNNGG 1 cut(s) 26
BssHII GCGCGC 1 cut(s) 1184
BssMI GATC 5 cut(s) 12, 340, 390, 745, 982
BssSI CACGAG 1 cut(s) 1116
BssT1I CCWWGG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 1116
Bst4CI ACNGT 4 cut(s) 290, 413, 1067, 1154
Bst6I CTCTTC 4 cut(s) 162, 516, 780, 951
BstAFI CTTAAG 3 cut(s) 487, 629, 1039
BstAPI GCANNNNNTGC 1 cut(s) 817
BstC8I GCNNGC 3 cut(s) 651, 795, 1186
BstDEI CTNAG 4 cut(s) 398, 864, 921, 1127
BstFNI CGCG 2 cut(s) 455, 1186
BstHHI GCGC 2 cut(s) 1186, 1188
BstKTI GATC 5 cut(s) 15, 343, 393, 748, 985
BstMAI GTCTC 4 cut(s) 910, 1022, 1113, 1171
BstMBI GATC 5 cut(s) 12, 340, 390, 745, 982
BstMWI GCNNNNNNNGC 1 cut(s) 817
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 2 cut(s) 455, 1186
BstV1I GCAGC 3 cut(s) 167, 804, 809
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 2 cut(s) 340, 390
BstYI RGATCY 2 cut(s) 340, 390
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 592
Cac8I GCNNGC 3 cut(s) 651, 795, 1186
CfoI GCGC 2 cut(s) 1186, 1188
Cfr10I RCCGGY 1 cut(s) 813
Cfr13I GGNCC 2 cut(s) 722, 1096
CspCI CAANNNNNGTGG 2 cut(s) 368, 403
CviAII CATG 5 cut(s) 419, 824, 973, 986, 1074
CviJI RGCY 9 cut(s) 129, 477, 649, 734, 793, 800, 817, 931, 1200
CviKI_1 RGCY 9 cut(s) 129, 477, 649, 734, 793, 800, 817, 931, 1200
DdeI CTNAG 4 cut(s) 398, 864, 921, 1127
DpnI GATC 5 cut(s) 14, 342, 392, 747, 984
DpnII GATC 5 cut(s) 12, 340, 390, 745, 982
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 4 cut(s) 162, 516, 780, 951
EarI CTCTTC 4 cut(s) 162, 516, 780, 951
Eco130I CCWWGG 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 910
Eco47I GGWCC 2 cut(s) 722, 1096
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 5 cut(s) 422, 827, 976, 989, 1077
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FaqI GGGAC 1 cut(s) 390
FatI CATG 5 cut(s) 418, 823, 972, 985, 1073
FbaI TGATCA 1 cut(s) 982
Fnu4HI GCNGC 3 cut(s) 156, 798, 818
Fsp4HI GCNGC 3 cut(s) 156, 798, 818
FspBI CTAG 3 cut(s) 54, 348, 731
GlaI GCGC 2 cut(s) 1185, 1187
GluI GCNGC 3 cut(s) 156, 798, 818
HaeIII GGCC 1 cut(s) 649
HapII CCGG 1 cut(s) 814
HhaI GCGC 2 cut(s) 1186, 1188
Hin1II CATG 5 cut(s) 422, 827, 976, 989, 1077
Hin6I GCGC 2 cut(s) 1184, 1186
HinP1I GCGC 2 cut(s) 1184, 1186
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 6 cut(s) 364, 464, 557, 752, 827, 1035
HpaII CCGG 1 cut(s) 814
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 3 cut(s) 142, 272, 416
Hpy188I TCNGA 2 cut(s) 437, 449
Hpy188III TCNNGA 4 cut(s) 749, 901, 1051, 1105
Hpy8I GTNNAC 3 cut(s) 142, 272, 416
Hpy99I CGWCG 5 cut(s) 10, 233, 236, 1022, 1158
HpyAV CCTTC 2 cut(s) 130, 737
HpyCH4III ACNGT 4 cut(s) 290, 413, 1067, 1154
HpyCH4IV ACGT 3 cut(s) 234, 1017, 1138
HpyCH4V TGCA 7 cut(s) 96, 142, 248, 330, 797, 820, 1115
HpyF10VI GCNNNNNNNGC 1 cut(s) 817
HpyF3I CTNAG 4 cut(s) 398, 864, 921, 1127
HpySE526I ACGT 3 cut(s) 234, 1017, 1138
Hsp92II CATG 5 cut(s) 422, 827, 976, 989, 1077
HspAI GCGC 2 cut(s) 1184, 1186
Ksp22I TGATCA 1 cut(s) 982
Kzo9I GATC 5 cut(s) 12, 340, 390, 745, 982
LmnI GCTCC 3 cut(s) 663, 891, 928
LpnPI CCDG 7 cut(s) 385, 546, 580, 631, 663, 827, 1017
Lsp1109I GCAGC 3 cut(s) 167, 804, 809
LweI GCATC 1 cut(s) 183
MaeI CTAG 3 cut(s) 54, 348, 731
MaeII ACGT 3 cut(s) 234, 1017, 1138
MaeIII GTNAC 2 cut(s) 235, 583
MalI GATC 5 cut(s) 14, 342, 392, 747, 984
MboI GATC 5 cut(s) 12, 340, 390, 745, 982
MboII GAAGA 8 cut(s) 14, 179, 184, 533, 747, 797, 968, 973
MflI RGATCY 2 cut(s) 340, 390
MhlI GDGCHC 2 cut(s) 144, 668
MluCI AATT 5 cut(s) 109, 208, 482, 527, 1046
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 3 cut(s) 83, 418, 1003
MnlI CCTC 5 cut(s) 34, 207, 307, 517, 865
Mph1103I ATGCAT 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 968
MspCI CTTAAG 3 cut(s) 487, 629, 1039
MspI CCGG 1 cut(s) 814
MvnI CGCG 2 cut(s) 455, 1186
MwoI GCNNNNNNNGC 1 cut(s) 817
NdeII GATC 5 cut(s) 12, 340, 390, 745, 982
NlaIII CATG 5 cut(s) 422, 827, 976, 989, 1077
NlaIV GGNNCC 3 cut(s) 60, 392, 724
NmuCI GTSAC 1 cut(s) 583
NsiI ATGCAT 1 cut(s) 332
PauI GCGCGC 1 cut(s) 1184
PdmI GAANNNNTTC 1 cut(s) 968
PfeI GAWTC 5 cut(s) 364, 464, 752, 827, 1035
PkrI GCNGC 3 cut(s) 157, 799, 819
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PspN4I GGNNCC 3 cut(s) 60, 392, 724
PspPI GGNCC 2 cut(s) 722, 1096
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 340, 390
PteI GCGCGC 1 cut(s) 1184
SatI GCNGC 3 cut(s) 156, 798, 818
Sau3AI GATC 5 cut(s) 12, 340, 390, 745, 982
Sau96I GGNCC 2 cut(s) 722, 1096
SchI GAGTC 1 cut(s) 551
SduI GDGCHC 2 cut(s) 144, 668
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 2 cut(s) 722, 1096
SmlI CTYRAG 4 cut(s) 487, 629, 901, 1039
SmoI CTYRAG 4 cut(s) 487, 629, 901, 1039
Sse9I AATT 5 cut(s) 109, 208, 482, 527, 1046
SsiI CCGC 1 cut(s) 455
SspMI CTAG 3 cut(s) 54, 348, 731
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 4 cut(s) 290, 413, 1067, 1154
TaiI ACGT 3 cut(s) 237, 1020, 1141
TaqI TCGA 7 cut(s) 186, 228, 608, 699, 876, 1050, 1156
TasI AATT 5 cut(s) 109, 208, 482, 527, 1046
TfiI GAWTC 5 cut(s) 364, 464, 752, 827, 1035
TscAI CASTG 2 cut(s) 87, 599
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 3 cut(s) 155, 797, 817
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 6 cut(s) 89, 350, 555, 747, 819, 961
TspGWI ACGGA 3 cut(s) 357, 683, 758
TspRI CASTG 2 cut(s) 87, 599
Vha464I CTTAAG 3 cut(s) 487, 629, 1039
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 722, 1096
XapI RAATTY 3 cut(s) 482, 527, 1046
XmnI GAANNNNTTC 1 cut(s) 968
XspI CTAG 3 cut(s) 54, 348, 731
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.