AT2G24510

3-phosphoinositide-dependent protein kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
10404373 .. 10405650
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24510.1

Sequence Viewer

Length: 804 bp
ATGATCTCCGATCTTCCGGACGATTTGGAATCTGAAATACTCTCTAGGGTTCCAACCAAGTCTCTAGCAAAATTGCAAACGATGGGAAACACTAGACTTGTGGTTTGGGACTCCAGTACCGGTGAAACCCGGTGGATCAAACCGAGAACTCGTTTTCGGAATGATGATTACTATGGTTTAGGATACGTAAACAGCAAGTCTTCTGGCCATAGCTTCAAAATCTTGAGGTCTTGCTATTATAGAAACGACCAGAAACAATGGGTTGCTGAGTTTGAGATCTATGAGTTTGGCTCTGATACTTGGAGGGTTCTTGATTACTTCACTCATGACTATGGTGTATTTTCAAGTGGCGGGCCCTTGAAAAGAAACACTTACTGGGTTGCTGGAGATAAAGAAATGGGCATGTTCATGTTGTATTTTGATTTCACAAGGGAGAGATTTGGGCATTTTCCTCTTCCGTTTAAGAGTTTTAATCGTGAAGATACTGCTTCTCTATCAGTTGTTAGGGAAGAAAAACTCTCAGTGTTACATCAAAAGATTCTTGAATTTTCAAATGAGATGAAGATATGGTTGACCAATAAGATTGATGAAACCATAGAATTGTCGTGGAGCAACTTCGTCTTAACAGTGGATTATGATAAGTTTAATTTACCGAGCGTGGTGAATGTGGCAAGTTTCTTGTTGGATGAGGAGAATAAAGTGGCAGTGTGTTCTGATATTGACGTGGATGATGAAAATAGGACCAGAGTCTACCCACTTTCACATCTCAGATTCTTGGATTTTGTAGGAAGATTAATGGATTAG

Protein Analysis

267

Amino Acids

31.38

Weight (kDa)

5.27

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 28 - 251 2.2e-61 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 750
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 351
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 545
AfaI GTAC 1 cut(s) 118
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 5 cut(s) 217, 345, 361, 545, 552
AjiI CACGTC 1 cut(s) 724
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 2 cut(s) 205, 353
ApaI GGGCCC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 545
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AseI ATTAAT 1 cut(s) 794
AsiGI ACCGGT 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 353, 354, 741
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 134, 673
AvaII GGWCC 1 cut(s) 741
BaeGI GKGCMC 1 cut(s) 357
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
BalI TGGCCA 1 cut(s) 207
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 192
BccI CCATC 1 cut(s) 76
BciVI GTATCC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 3 cut(s) 45, 65, 93
BfuI GTATCC 1 cut(s) 176
BglII AGATCT 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 741
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 353, 354, 741
BmiI GGNNCC 2 cut(s) 51, 355
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BoxI GACNNNNGTC 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 2 cut(s) 97, 405
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 187
BsaWI WCCGGW 2 cut(s) 16, 119
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 114, 380
BseAI TCCGGA 1 cut(s) 16
BseGI GGATG 2 cut(s) 691, 733
BseMII CTCAG 3 cut(s) 258, 534, 781
BseNI ACTGG 2 cut(s) 114, 380
BseRI GAGGAG 1 cut(s) 704
BseSI GKGCMC 1 cut(s) 357
BshFI GGCC 2 cut(s) 207, 355
BshTI ACCGGT 1 cut(s) 119
BsiSI CCGG 3 cut(s) 17, 120, 130
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 207, 355
Bsp120I GGGCCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 4 cut(s) 3, 10, 135, 276
BspACI CCGC 1 cut(s) 351
BspANI GGCC 2 cut(s) 207, 355
BspCNI CTCAG 3 cut(s) 259, 533, 780
BspEI TCCGGA 1 cut(s) 16
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 51, 355
BspPI GGATC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 2 cut(s) 114, 380
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 4 cut(s) 3, 10, 135, 276
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 3 cut(s) 267, 520, 767
BstF5I GGATG 2 cut(s) 691, 733
BstKTI GATC 4 cut(s) 6, 13, 138, 279
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 3, 10, 135, 276
BstNSI RCATGY 1 cut(s) 406
BstPAI GACNNNNGTC 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 357
BstSNI TACGTA 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 207, 355
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 2 cut(s) 691, 733
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 3 cut(s) 528, 633, 711
Cac8I GCNNGC 1 cut(s) 353
CciI TCATGA 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 3 cut(s) 353, 354, 741
Csp6I GTAC 1 cut(s) 117
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 3 cut(s) 326, 403, 409
CviJI RGCY 4 cut(s) 207, 213, 291, 355
CviKI_1 RGCY 4 cut(s) 207, 213, 291, 355
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 3 cut(s) 267, 520, 767
DpnI GATC 4 cut(s) 5, 12, 137, 278
DpnII GATC 4 cut(s) 3, 10, 135, 276
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco105I TACGTA 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 357
FaeI CATG 3 cut(s) 329, 406, 412
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 325, 402, 408
FauI CCCGC 1 cut(s) 344
FblI GTMKAC 1 cut(s) 750
FokI GGATG 2 cut(s) 698, 740
FriOI GRGCYC 1 cut(s) 357
FspBI CTAG 3 cut(s) 45, 65, 93
GsuI CTGGAG 2 cut(s) 97, 405
HaeIII GGCC 2 cut(s) 207, 355
HapII CCGG 3 cut(s) 17, 120, 130
Hin1II CATG 3 cut(s) 329, 406, 412
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 5 cut(s) 29, 110, 538, 747, 771
HpaII CCGG 3 cut(s) 17, 120, 130
HphI GGTGA 2 cut(s) 134, 673
Hpy166II GTNNAC 3 cut(s) 190, 573, 751
Hpy188I TCNGA 6 cut(s) 10, 34, 159, 295, 715, 770
Hpy188III TCNNGA 6 cut(s) 17, 223, 311, 326, 476, 542
Hpy8I GTNNAC 3 cut(s) 190, 573, 751
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 2 cut(s) 186, 723
HpyCH4V TGCA 1 cut(s) 76
HpyF3I CTNAG 3 cut(s) 267, 520, 767
HpySE526I ACGT 2 cut(s) 186, 723
Hsp92II CATG 3 cut(s) 329, 406, 412
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 4 cut(s) 3, 10, 135, 276
LmnI GCTCC 1 cut(s) 609
LpnPI CCDG 9 cut(s) 30, 127, 133, 143, 189, 263, 361, 369, 757
MaeI CTAG 3 cut(s) 45, 65, 93
MaeII ACGT 2 cut(s) 186, 723
MaeIII GTNAC 1 cut(s) 525
MalI GATC 4 cut(s) 5, 12, 137, 278
MboI GATC 4 cut(s) 3, 10, 135, 276
MboII GAAGA 7 cut(s) 5, 192, 446, 491, 521, 574, 801
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 4 cut(s) 71, 545, 599, 646
MluNI TGGCCA 1 cut(s) 207
MlyI GAGTC 2 cut(s) 104, 756
MmeI TCCRAC 2 cut(s) 77, 663
MnlI CCTC 4 cut(s) 219, 297, 462, 682
Mox20I TGGCCA 1 cut(s) 207
MroI TCCGGA 1 cut(s) 16
MscI TGGCCA 1 cut(s) 207
MseI TTAA 5 cut(s) 462, 471, 623, 645, 794
MslI CAYNNNNRTG 2 cut(s) 330, 407
Msp20I TGGCCA 1 cut(s) 207
MspI CCGG 3 cut(s) 17, 120, 130
MspR9I CCNGG 1 cut(s) 130
NciI CCSGG 1 cut(s) 130
NdeII GATC 4 cut(s) 3, 10, 135, 276
NlaIII CATG 3 cut(s) 329, 406, 412
NlaIV GGNNCC 2 cut(s) 51, 355
NspI RCATGY 1 cut(s) 406
PagI TCATGA 1 cut(s) 325
PfeI GAWTC 3 cut(s) 29, 538, 771
PinAI ACCGGT 1 cut(s) 119
PleI GAGTC 2 cut(s) 104, 755
PpsI GAGTC 2 cut(s) 104, 755
Ppu21I YACGTR 1 cut(s) 187
PshAI GACNNNNGTC 1 cut(s) 746
PshBI ATTAAT 1 cut(s) 794
PspN4I GGNNCC 2 cut(s) 51, 355
PspOMI GGGCCC 1 cut(s) 353
PspPI GGNCC 3 cut(s) 353, 354, 741
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 2 cut(s) 330, 407
SaqAI TTAA 5 cut(s) 462, 471, 623, 645, 794
Sau3AI GATC 4 cut(s) 3, 10, 135, 276
Sau96I GGNCC 3 cut(s) 353, 354, 741
SchI GAGTC 2 cut(s) 104, 756
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 357
SetI ASST 4 cut(s) 189, 215, 230, 726
SinI GGWCC 1 cut(s) 741
SmiMI CAYNNNNRTG 2 cut(s) 330, 407
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SnaBI TACGTA 1 cut(s) 187
Sse9I AATT 4 cut(s) 71, 545, 599, 646
SsiI CCGC 1 cut(s) 351
SspMI CTAG 3 cut(s) 45, 65, 93
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 2 cut(s) 189, 726
TasI AATT 4 cut(s) 71, 545, 599, 646
TfiI GAWTC 3 cut(s) 29, 538, 771
Tru1I TTAA 5 cut(s) 462, 471, 623, 645, 794
Tru9I TTAA 5 cut(s) 462, 471, 623, 645, 794
TscAI CASTG 3 cut(s) 528, 633, 711
TspDTI ATGAA 4 cut(s) 397, 575, 603, 747
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 3 cut(s) 528, 633, 711
VpaK11BI GGWCC 1 cut(s) 741
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 1 cut(s) 545
XceI RCATGY 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 750
XspI CTAG 3 cut(s) 45, 65, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.