Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000186

Physical Location & Seq

Genomic Coordinates Reverse (-)

3242750 .. 3243862

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGTTCTTCTTTGCCATTTGATTTAATCTTAGAGATACTTCAGAGAACTCCGGCAGAATCTTTGCTCCGATTCAAGTCTACGTGCAAGAAATGGTACGAACTCATCAGCAACGACAAGAGATTCATGTACAAGCACTTGGATAAATCTACGAAACGGTTCTTAAGAATCGAGAATCGTGAGAGGGTTCAAATCTTGGATCCCGTGACCGAAATCCTCGCCGTTTCAACAATCCCAAACGAGCTTCGCCACAAGTATTTTACTCTGATTCACTGTGATGGTCTAATGTTGGGCATGTGTTACGAAGAACTAGGTAGTGACCCCAATCTTGCAGTTTGGAATCCGGTTATGAGAAAAATCAAATGGATCAAACCGTCACCACCGTTGGTTTGTTACTGGGGAAGTGATTACTTGGGGTTTGGATACGACAAAACATTTCGTGATAACTACAAAATCTTGAGGTTTACTTATCTTGGTGATGATGATGATGATGAATCATATCCAAAGTGTCAGATCTATGAATTCAATTCTGGCTCGTGGAGAAGTATTGAGGCTAAGTTTGATGGGGAAATAGATGTTGAGGTCGACGGCGTGTCTGTGAATGGAAGTATGTATTGGATTGAATTGCAGGAGAAGAAAAACTTCATTTTAAGTTTCGATTTCTCCAAGGAAACATTCAACCGCATATGCGATTCTCCACTCTATTGGGATATCAAACGATTAGGATGTTTCAATGGAGATAGACTTTCTCTGTTACAACAAAATGAAGCAACAAGGGAGATTCATGTGTCGGTGACAAACAAGTTGAGTGATGAGGTTGTTTCGTTCAGCAGATATTTCAGTGTGACTCTCCCTGATATTCCGTTGTTCCGGTCCATTGATATTCTGCCTCTTCCGGGGTGCTTTATTGGCAAGAACAGAAATATCATAGCATGGTGCGAGCAACTTGTAGGAAAATATGATGATCATACTAGCATCATTCTTTACGAAATTGGCGAAGGTGGGGTTACAAAACGAATTCGGACAGGACGACATGAAGCGGATGAGGACTACAATGACCTGGATAATTGTAGCTATGTCTATGTTCCAAGTCTGATTCCCGTTCCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

370

Amino Acids

43.13

Weight (kDa)

5.22

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	3 - 41	4e-10	F-box domain
F-box-like	PF12937	4 - 42	1.2e-07	F-box-like
FBA_1	PF07734	64 - 368	1.4e-62	F-box associated beta propeller domain
FBA_3	PF08268	87 - 255	8.8e-15	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	80, 585
AciI	CCGC	2 cut(s)	682, 1040
AclWI	GGATC	3 cut(s)	194, 207, 374
AcsI	RAATTY	2 cut(s)	521, 1017
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	98, 131
AfiI	CCNNNNNNNGG	1 cut(s)	896
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	7 cut(s)	76, 191, 228, 526, 623, 679, 733
AhdI	GACNNNNNGTC	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	1059
AjuI	GAANNNNNNNTTGG	4 cut(s)	598, 630, 659, 691
AluBI	AGCT	2 cut(s)	244, 1074
AluI	AGCT	2 cut(s)	244, 1074
AlwI	GGATC	3 cut(s)	194, 207, 374
ApoI	RAATTY	2 cut(s)	521, 1017
Asp700I	GAANNNNTTC	2 cut(s)	158, 641
AspS9I	GGNCC	1 cut(s)	873
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	3 cut(s)	369, 488, 805
AvaII	GGWCC	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	535
BccI	CCATC	2 cut(s)	272, 557
BceAI	ACGGC	2 cut(s)	206, 604
BciT130I	CCWGG	1 cut(s)	1061
BciVI	GTATCC	1 cut(s)	416
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	897
BfaI	CTAG	2 cut(s)	311, 972
BfrI	CTTAAG	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	513
Bme1390I	CCNGG	2 cut(s)	897, 1061
Bme18I	GGWCC	1 cut(s)	873
BmeRI	GACNNNNNGTC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	873
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	897, 1061
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	984
BmuI	ACTGGG	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	1 cut(s)	897
BsaAI	YACGTR	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	666, 896
BsaWI	WCCGGW	2 cut(s)	343, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	896
Bse1I	ACTGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	1061
BseDI	CCNNGG	2 cut(s)	666, 896
BseGI	GGATG	2 cut(s)	731, 1048
BseLI	CCNNNNNNNGG	1 cut(s)	896
BseNI	ACTGG	1 cut(s)	401
BsiSI	CCGG	4 cut(s)	53, 344, 871, 896
BslI	CCNNNNNNNGG	1 cut(s)	896
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	199, 366, 513, 964
BspACI	CCGC	2 cut(s)	682, 1040
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	194, 207, 374
BspTI	CTTAAG	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	666, 896
BssMI	GATC	4 cut(s)	199, 366, 513, 964
BssSI	CACGAG	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	1061
Bst4CI	ACNGT	4 cut(s)	159, 275, 375, 384
Bst6I	CTCTTC	1 cut(s)	897
BstAFI	CTTAAG	1 cut(s)	163
BstAUI	TGTACA	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	941
BstDEI	CTNAG	2 cut(s)	31, 555
BstF5I	GGATG	2 cut(s)	731, 1048
BstKTI	GATC	4 cut(s)	202, 369, 516, 967
BstMBI	GATC	4 cut(s)	199, 366, 513, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	909
BstNI	CCWGG	1 cut(s)	1061
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	895, 1059
BstX2I	RGATCY	2 cut(s)	199, 513
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstYI	RGATCY	2 cut(s)	199, 513
BsuI	GTATCC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	731, 1048
BtsIMutI	CAGTG	2 cut(s)	271, 847
Cac8I	GCNNGC	1 cut(s)	941
Cfr13I	GGNCC	1 cut(s)	873
Csp6I	GTAC	2 cut(s)	97, 130
CviAII	CATG	5 cut(s)	127, 295, 785, 933, 1034
CviJI	RGCY	4 cut(s)	244, 534, 554, 1074
CviKI_1	RGCY	4 cut(s)	244, 534, 554, 1074
CviQI	GTAC	2 cut(s)	97, 130
DdeI	CTNAG	2 cut(s)	31, 555
DpnI	GATC	4 cut(s)	201, 368, 515, 966
DpnII	GATC	4 cut(s)	199, 366, 513, 964
DriI	GACNNNNNGTC	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	897
Eam1105I	GACNNNNNGTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	897
Eco130I	CCWWGG	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	873
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	2 cut(s)	521, 1017
EcoRII	CCWGG	1 cut(s)	1059
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	5 cut(s)	130, 298, 788, 936, 1037
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	5 cut(s)	126, 294, 784, 932, 1033
FauNDI	CATATG	1 cut(s)	686
FbaI	TGATCA	1 cut(s)	964
FblI	GTMKAC	2 cut(s)	80, 585
FokI	GGATG	2 cut(s)	738, 1055
FspBI	CTAG	2 cut(s)	311, 972
HapII	CCGG	4 cut(s)	53, 344, 871, 896
Hin1II	CATG	5 cut(s)	130, 298, 788, 936, 1037
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HpaII	CCGG	4 cut(s)	53, 344, 871, 896
HphI	GGTGA	3 cut(s)	369, 488, 805
Hpy166II	GTNNAC	3 cut(s)	81, 465, 586
Hpy188I	TCNGA	6 cut(s)	45, 71, 267, 513, 1023, 1095
Hpy188III	TCNNGA	5 cut(s)	172, 179, 440, 457, 1106
Hpy8I	GTNNAC	3 cut(s)	81, 465, 586
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	1 cut(s)	992
HpyCH4III	ACNGT	4 cut(s)	159, 275, 375, 384
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	87, 332, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	909
HpyF3I	CTNAG	2 cut(s)	31, 555
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	130, 298, 788, 936, 1037
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	4 cut(s)	199, 366, 513, 964
LmnI	GCTCC	1 cut(s)	72
LweI	GCATC	1 cut(s)	984
MaeI	CTAG	2 cut(s)	311, 972
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	9 cut(s)	205, 299, 317, 375, 392, 753, 793, 844, 1006
MalI	GATC	4 cut(s)	201, 368, 515, 966
MboI	GATC	4 cut(s)	199, 366, 513, 964
MboII	GAAGA	3 cut(s)	317, 646, 884
MflI	RGATCY	2 cut(s)	199, 513
MluCI	AATT	6 cut(s)	521, 526, 623, 990, 1017, 1066
MlyI	GAGTC	1 cut(s)	841
MnlI	CCTC	8 cut(s)	177, 227, 453, 544, 574, 808, 900, 1039
MroXI	GAANNNNTTC	2 cut(s)	158, 641
MseI	TTAA	3 cut(s)	26, 164, 650
MslI	CAYNNNNRTG	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	4 cut(s)	53, 344, 871, 896
MspR9I	CCNGG	2 cut(s)	897, 1061
MvaI	CCWGG	1 cut(s)	1061
MwoI	GCNNNNNNNGC	1 cut(s)	909
NciI	CCSGG	1 cut(s)	897
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	4 cut(s)	199, 366, 513, 964
NlaIII	CATG	5 cut(s)	130, 298, 788, 936, 1037
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	5 cut(s)	205, 317, 375, 793, 844
NspI	RCATGY	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	2 cut(s)	993, 1027
PdmI	GAANNNNTTC	2 cut(s)	158, 641
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Ppu21I	YACGTR	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	1059
PspGI	CCWGG	1 cut(s)	1059
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	873
PsuI	RGATCY	2 cut(s)	199, 513
RsaI	GTAC	2 cut(s)	98, 131
RsaNI	GTAC	2 cut(s)	97, 130
RseI	CAYNNNNRTG	1 cut(s)	276
SalI	GTCGAC	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	26, 164, 650
Sau3AI	GATC	4 cut(s)	199, 366, 513, 964
Sau96I	GGNCC	1 cut(s)	873
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	2 cut(s)	897, 1061
SetI	ASST	9 cut(s)	86, 246, 316, 464, 585, 819, 1003, 1062, 1076
SfaNI	GCATC	1 cut(s)	984
SinI	GGWCC	1 cut(s)	873
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	163, 457
SmoI	CTYRAG	2 cut(s)	163, 457
Sse9I	AATT	6 cut(s)	521, 526, 623, 990, 1017, 1066
SsiI	CCGC	2 cut(s)	682, 1040
SspMI	CTAG	2 cut(s)	311, 972
StyD4I	CCNGG	2 cut(s)	895, 1059
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	4 cut(s)	159, 275, 375, 384
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	171, 585, 657
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	6 cut(s)	521, 526, 623, 990, 1017, 1066
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	3 cut(s)	26, 164, 650
Tru9I	TTAA	3 cut(s)	26, 164, 650
TscAI	CASTG	2 cut(s)	278, 847
TseFI	GTSAC	5 cut(s)	205, 317, 375, 793, 844
Tsp45I	GTSAC	5 cut(s)	205, 317, 375, 793, 844
TspDTI	ATGAA	7 cut(s)	115, 507, 534, 634, 773, 780, 1050
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	2 cut(s)	278, 847
Vha464I	CTTAAG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	873
XapI	RAATTY	2 cut(s)	521, 1017
XceI	RCATGY	1 cut(s)	298
XmiI	GTMKAC	2 cut(s)	80, 585
XmnI	GAANNNNTTC	2 cut(s)	158, 641
XspI	CTAG	2 cut(s)	311, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.