AT3G18120

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
6210090 .. 6210572
483 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18120.1

Sequence Viewer

Length: 483 bp
ATGAATATTACTATCCCTAACATTAACTCTGCGAACTGGGAGATACAGTTTTCTGCACGTGGCGTGTCTCTCAAGGGAAATACTCAACAAAAGCATCTCCCTGAGTTCTTACTCTGTTATGATTTTACAAGAGAGATATTTGGACCCCCTCTAAGTCTACCGTTTCACTCTTTTAATGAAGATACTGTGACTCTATCTAGTGTTAGAGATGAGCAACTTACAGTGTTATTTGAGAGAGATGATACATTACAGATGGAGATATGGATTACGACTAAGATTGAGCCCGAAACAGCGTCGTGGAGCAAGTTGTTCTTAGCGGTGGGTATGGAACCACTAACTGGTTTGCAGTTTCAGGTTGCCGCTGGGAATTTCTTTGTTGACGAGGAGAAGAAAGTTGTCGTGTTTTTGGATAAAGACACAGAGACGCGGGAGCGCTACATAGCCTTTATCACCCACGTATCTGTTCTTATGTTCCAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

160

Amino Acids

18.43

Weight (kDa)

4.74

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 10 - 147 1.4e-40 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 427
AciI CCGC 3 cut(s) 317, 360, 427
AcsI RAATTY 1 cut(s) 367
AcvI CACGTG 1 cut(s) 59
AfeI AGCGCT 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 338
Alw26I GTCTC 2 cut(s) 72, 416
Aor51HI AGCGCT 1 cut(s) 434
ApoI RAATTY 1 cut(s) 367
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanII GRGCYC 1 cut(s) 285
BbrPI CACGTG 1 cut(s) 59
BccI CCATC 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 72, 416
BfaI CTAG 2 cut(s) 198, 481
BfoI RGCGCY 1 cut(s) 436
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 145, 330
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 56
BsaAI YACGTR 2 cut(s) 59, 457
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 41, 343
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 41, 343
BseRI GAGGAG 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 72, 416
BsmBI CGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 285
BspACI CCGC 3 cut(s) 317, 360, 427
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 145, 330
BsrI ACTGG 2 cut(s) 41, 343
Bst4CI ACNGT 4 cut(s) 48, 162, 187, 223
BstBAI YACGTR 2 cut(s) 59, 457
BstDEI CTNAG 4 cut(s) 102, 152, 273, 313
BstFNI CGCG 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstMAI GTCTC 2 cut(s) 72, 416
BstUI CGCG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 228
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 2 cut(s) 282, 433
CviJI RGCY 2 cut(s) 283, 443
CviKI_1 RGCY 2 cut(s) 283, 443
DdeI CTNAG 4 cut(s) 102, 152, 273, 313
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 143
Eco47III AGCGCT 1 cut(s) 434
Eco72I CACGTG 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 416
FaiI YATR 5 cut(s) 120, 262, 326, 440, 470
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FauI CCCGC 1 cut(s) 420
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 360
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 2 cut(s) 198, 481
GlaI GCGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 360
GsaI CCCAGC 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 436
HgaI GACGC 2 cut(s) 282, 433
HhaI GCGC 1 cut(s) 435
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 158, 379
Hpy8I GTNNAC 2 cut(s) 158, 379
Hpy99I CGWCG 1 cut(s) 298
HpyCH4III ACNGT 4 cut(s) 48, 162, 187, 223
HpyCH4IV ACGT 2 cut(s) 58, 456
HpyCH4V TGCA 2 cut(s) 56, 346
HpyF3I CTNAG 4 cut(s) 102, 152, 273, 313
HpySE526I ACGT 2 cut(s) 58, 456
HspAI GCGC 1 cut(s) 433
LmnI GCTCC 2 cut(s) 300, 430
LpnPI CCDG 5 cut(s) 22, 114, 324, 338, 348
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 198, 481
MaeII ACGT 2 cut(s) 58, 456
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 2 cut(s) 191, 400
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 1 cut(s) 367
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 2 cut(s) 159, 376
MseI TTAA 2 cut(s) 24, 174
MspA1I CMGCKG 1 cut(s) 362
MvnI CGCG 1 cut(s) 427
NlaIV GGNNCC 2 cut(s) 145, 330
NmuCI GTSAC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 2 cut(s) 59, 457
PspCI CACGTG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 145, 330
PspPI GGNCC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 24, 174
SatI GCNGC 1 cut(s) 360
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 285
SetI ASST 3 cut(s) 61, 357, 459
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 367
SsiI CCGC 3 cut(s) 317, 360, 427
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 198, 481
TaaI ACNGT 4 cut(s) 48, 162, 187, 223
TaiI ACGT 2 cut(s) 61, 459
TasI AATT 1 cut(s) 367
TauI GCSGC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 24, 174
Tru9I TTAA 2 cut(s) 24, 174
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 17, 192
TspRI CASTG 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 2 cut(s) 198, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.