AT3G20710

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
7237818 .. 7239149
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20710.1

Sequence Viewer

Length: 1089 bp
ATGATGATGTCAAATCTTCCAAAGGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTTAAATACCTGAGAGCAATACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATCGGAGCTTTGCGAATAAGAACATCGACAAAGCAGCGGTATCAGGGGAAAAAGAGTTTCTGATGATCACACAATTTAATGTTTTTTGGGTCGGCGTCAATCTCCATAGAAGTCAGAACAACAGCTTTGATCTATCTATTCAGCTTAAGGCTAAAATTGTTAGCAGAGACAAAAAAGATGATTTATTCCAAAAATCTCAAGTCATTCACTGCAACGGTGTATTTTTATGCGTACGGGAAAAAATGCTTGTGGTTTTGAACCCGTATTGGGGACAAACAAAACGGATCATGCCAAGACCTCCTTTCGGGTGCTTCGACAGGTATGCTCTCGGATACGACAAATCCAGCGGTAGCCACAAAATCCTGAGGCTTTTCGGTGTCAACCAAAATAACCTCAATATCTACGATTTGAGCTCTAGTTCATGGATGATTCCTGATGGCACTCTTGAACGAGATATGGAGTATATGAAACAAGGCGTGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGAATCAATAGACTGGTACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTGCTCTTAAAGAAGAGAAGCTTGCGGTGTTACTATGGGATACAATGGTTATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTGATATGGAACCAAGTATTTATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAAAGAAAGTCGCAGTTGTGTTTGAGAAAGACAGCTCGTCATGGTCATGGATGTATAACCCCAATTACAACAAAGCTTACATAGCTGGAGAGAATGGTTATTTCAAAAGTGTGAATCTTCTTAAATCTCCAAACACACTACAGCTTGGCCATCTTGTGTGCTCATATGCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

362

Amino Acids

42.14

Weight (kDa)

8.83

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 42 5.9e-11 F-box domain
FBA_1 PF07734 58 - 360 8.2e-78 F-box associated beta propeller domain
FBA_3 PF08268 73 - 230 3.1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
AciI CCGC 4 cut(s) 152, 462, 776, 833
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 1060
AcsI RAATTY 1 cut(s) 895
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 101, 348, 650
AfiI CCNNNNNNNGG 3 cut(s) 382, 383, 419
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 4 cut(s) 373, 563, 601, 1018
AhdI GACNNNNNGTC 1 cut(s) 949
AluBI AGCT 9 cut(s) 123, 240, 259, 528, 772, 948, 989, 998, 1057
AluI AGCT 9 cut(s) 123, 240, 259, 528, 772, 948, 989, 998, 1057
Alw21I GWGCWC 2 cut(s) 530, 1076
Alw26I GTCTC 2 cut(s) 276, 750
AlwI GGATC 1 cut(s) 407
AoxI GGCC 1 cut(s) 1060
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 895
Asp700I GAANNNNTTC 1 cut(s) 899
AxyI CCTNAGG 1 cut(s) 479
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BalI TGGCCA 1 cut(s) 1062
BanII GRGCYC 1 cut(s) 530
Bbv12I GWGCWC 2 cut(s) 530, 1076
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 545, 1071
BcgI CGANNNNNNTGC 4 cut(s) 69, 103, 419, 453
BciVI GTATCC 2 cut(s) 440, 784
BclI TGATCA 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 276, 750
BfaI CTAG 2 cut(s) 48, 531
BfmI CTRYAG 1 cut(s) 1052
BfrI CTTAAG 1 cut(s) 260
BfuI GTATCC 2 cut(s) 440, 784
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmeRI GACNNNNNGTC 1 cut(s) 949
BmiI GGNNCC 2 cut(s) 54, 870
BmsI GCATC 2 cut(s) 820, 855
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 1020
BpuEI CTTGAG 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 383, 419
Bse1I ACTGG 2 cut(s) 620, 650
Bse21I CCTNAGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 546, 969
BseLI CCNNNNNNNGG 3 cut(s) 382, 383, 419
BseMII CTCAG 2 cut(s) 59, 470
BseNI ACTGG 2 cut(s) 620, 650
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 1062
BsiHKAI GWGCWC 2 cut(s) 530, 1076
BsiWI CGTACG 1 cut(s) 346
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 3 cut(s) 382, 383, 419
BsmAI GTCTC 2 cut(s) 276, 750
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 1 cut(s) 1062
Bsp1286I GDGCHC 2 cut(s) 530, 1076
Bsp143I GATC 4 cut(s) 80, 180, 244, 399
BspACI CCGC 4 cut(s) 152, 462, 776, 833
BspANI GGCC 1 cut(s) 1062
BspCNI CTCAG 2 cut(s) 60, 471
BspLI GGNNCC 2 cut(s) 54, 870
BspPI GGATC 1 cut(s) 407
BspTI CTTAAG 1 cut(s) 260
BsrI ACTGG 2 cut(s) 620, 650
BssMI GATC 4 cut(s) 80, 180, 244, 399
BssNI GRCGYC 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 759
BstACI GRCGYC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 2 cut(s) 68, 479
BstF5I GGATG 2 cut(s) 546, 969
BstKTI GATC 4 cut(s) 83, 183, 247, 402
BstMAI GTCTC 2 cut(s) 276, 750
BstMBI GATC 4 cut(s) 80, 180, 244, 399
BstMWI GCNNNNNNNGC 1 cut(s) 995
BstSFI CTRYAG 1 cut(s) 1052
BstV1I GCAGC 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 479
BsuI GTATCC 2 cut(s) 440, 784
BsuRI GGCC 1 cut(s) 1062
BtsCI GGATG 2 cut(s) 546, 969
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 774
CseI GACGC 1 cut(s) 199
Csp6I GTAC 3 cut(s) 100, 347, 649
CviAII CATG 4 cut(s) 403, 537, 954, 960
CviQI GTAC 3 cut(s) 100, 347, 649
DdeI CTNAG 2 cut(s) 68, 479
DpnI GATC 4 cut(s) 82, 182, 246, 401
DpnII GATC 4 cut(s) 80, 180, 244, 399
DraI TTTAAA 1 cut(s) 61
DriI GACNNNNNGTC 1 cut(s) 949
EaeI YGGCCR 1 cut(s) 1060
Eam1104I CTCTTC 1 cut(s) 759
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 1 cut(s) 759
Ecl136II GAGCTC 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 528
Eco81I CCTNAGG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 530
FaeI CATG 4 cut(s) 406, 540, 957, 963
FalI AAGNNNNNCTT 4 cut(s) 400, 432, 756, 788
FaqI GGGAC 1 cut(s) 399
FatI CATG 4 cut(s) 402, 536, 953, 959
FauNDI CATATG 1 cut(s) 1078
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 553, 976
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 48, 531
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 1 cut(s) 1062
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 4 cut(s) 406, 540, 957, 963
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 2 cut(s) 770, 987
HinfI GANTC 4 cut(s) 40, 544, 635, 1027
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 4 cut(s) 120, 177, 231, 446
Hpy188III TCNNGA 3 cut(s) 478, 548, 560
Hpy8I GTNNAC 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 710
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 90, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 995
HpyF3I CTNAG 2 cut(s) 68, 479
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 4 cut(s) 406, 540, 957, 963
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 80, 180, 244, 399
LmnI GCTCC 2 cut(s) 120, 843
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 2 cut(s) 820, 855
MaeI CTAG 2 cut(s) 48, 531
MaeIII GTNAC 2 cut(s) 780, 808
MalI GATC 4 cut(s) 82, 182, 246, 401
MboI GATC 4 cut(s) 80, 180, 244, 399
MboII GAAGA 5 cut(s) 8, 776, 841, 892, 1022
MhlI GDGCHC 2 cut(s) 530, 1076
MlsI TGGCCA 1 cut(s) 1062
MluCI AATT 5 cut(s) 94, 188, 270, 895, 976
MluNI TGGCCA 1 cut(s) 1062
MnlI CCTC 7 cut(s) 28, 423, 474, 518, 702, 708, 904
Mox20I TGGCCA 1 cut(s) 1062
MroXI GAANNNNTTC 1 cut(s) 899
MscI TGGCCA 1 cut(s) 1062
MseI TTAA 6 cut(s) 60, 192, 261, 759, 854, 1035
MslI CAYNNNNRTG 1 cut(s) 958
Msp20I TGGCCA 1 cut(s) 1062
MspA1I CMGCKG 2 cut(s) 152, 462
MspCI CTTAAG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 995
NdeI CATATG 1 cut(s) 1078
NdeII GATC 4 cut(s) 80, 180, 244, 399
NlaIII CATG 4 cut(s) 406, 540, 957, 963
NlaIV GGNNCC 2 cut(s) 54, 870
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 899
PfeI GAWTC 4 cut(s) 40, 544, 635, 1027
Pfl23II CGTACG 1 cut(s) 346
PkrI GCNGC 1 cut(s) 151
PsiI TTATAA 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 530
PspLI CGTACG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 54, 870
RsaI GTAC 3 cut(s) 101, 348, 650
RsaNI GTAC 3 cut(s) 100, 347, 649
RseI CAYNNNNRTG 1 cut(s) 958
SacI GAGCTC 1 cut(s) 530
SaqAI TTAA 6 cut(s) 60, 192, 261, 759, 854, 1035
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 4 cut(s) 80, 180, 244, 399
SduI GDGCHC 2 cut(s) 530, 1076
SfaNI GCATC 2 cut(s) 820, 855
SfcI CTRYAG 1 cut(s) 1052
SmiMI CAYNNNNRTG 1 cut(s) 958
SmlI CTYRAG 2 cut(s) 260, 312
SmoI CTYRAG 2 cut(s) 260, 312
Sse9I AATT 5 cut(s) 94, 188, 270, 895, 976
SsiI CCGC 4 cut(s) 152, 462, 776, 833
SspMI CTAG 2 cut(s) 48, 531
SstI GAGCTC 1 cut(s) 530
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 2 cut(s) 141, 429
TasI AATT 5 cut(s) 94, 188, 270, 895, 976
TfiI GAWTC 4 cut(s) 40, 544, 635, 1027
Tru1I TTAA 6 cut(s) 60, 192, 261, 759, 854, 1035
Tru9I TTAA 6 cut(s) 60, 192, 261, 759, 854, 1035
TscAI CASTG 1 cut(s) 329
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 525, 596, 729, 892
TspGWI ACGGA 2 cut(s) 45, 412
TspRI CASTG 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 260
XapI RAATTY 1 cut(s) 895
XmnI GAANNNNTTC 1 cut(s) 899
XspI CTAG 2 cut(s) 48, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.