AT1G66490

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Reverse (-)
24809421 .. 24810549
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66490.1

Sequence Viewer

Length: 1083 bp
ATGAGGACAATCTCTGATCTTCCGGTGGCTTTGGTAGAAGAGATACTCTCTAGGGTTCCATTAACATCTCTGAGTGCCGTGCGATCTACTTGTAAAACGTGGAACGCTTTATCAAAAACTCAGATTTTTGGCAAAACGAGGCAGCAGTTTCTAGGGTTCATGATGATAGATTTTGGGCTTTATTCAATAAAGTTCGATCTCCAAGGACTCAATTACGAAAGCGACTTCGTTGAACCATCTATAAAGCGAGTAAGTATACTTGACCAACTCGATATATTTAAAGTCTTTCATTGCGAAGGCTTGTTGTTATGCGTCTTCAGAGGTAACCGATGGCCTGTAGTGTGGAACCCTTATCTGGGGGGAACAGGGTGGATTCAACCCATAAGCGATTTCCACAAATATCAAGTATCAGACAAGTTTGCTTTCGGATACGAGAACAAGAACCACTTTTTTGGATTTTATGATATCTACGATCTTAACTCTAGTGCATGGAAGGTTCTTGATGTCAATCCCGATTGTGATATAAAATGTGGCGTGTCTTTGAAAGGAAAAACTTACTTTTTTGCTAAAGAAATAGCAAAAGCTCCAAATGTCAAAGATTTTTTAGTGTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGCCGTTTCACTCTTGCGGTTTGTTTTCAGAACATGTGACTTTATCTTGTGTAAGAGATGAGCACTTAGCTGTCTTATATCGACGGTACAATGGAGTAATGGAGATATATATTACAACTAAGATTGAGCCGAATGAGGTATTCTGGAGCAATTTCTTGAAAGTGGATCTCACTACTTTTCCGGACAGATTTTATGGAAGTCGATCTCACTACTTCTTCATTGACGAGGAGAAAAAAGTCGCTGTGGTTTTCAAGAATGAACCTGAATGGACCATGGATTGTTCCTACCAAACAGCTTACATTATTGGAAAAGGAGGATATCTCAAATCTGTGAAATTCGGAGAAACTCCTAATGACCGGAAACATAACAACGCATGGAATATTAACTCGTTTATGTTATCTTCTTATGTTCCAAGTTTAGTGCAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

360

Amino Acids

41.7

Weight (kDa)

7.55

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 44 2e-08 F-box domain
FBA_1 PF07734 52 - 360 4.4e-82 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 256
AccII CGCG 1 cut(s) 643
AccIII TCCGGA 1 cut(s) 832
AciI CCGC 2 cut(s) 641, 669
AclWI GGATC 1 cut(s) 825
AcsI RAATTY 1 cut(s) 986
AcuI CTGAAG 1 cut(s) 301
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 2 cut(s) 355, 356
AflIII ACRYGT 1 cut(s) 685
AgsI TTSAA 6 cut(s) 186, 233, 377, 544, 811, 904
AluBI AGCT 3 cut(s) 584, 722, 947
AluI AGCT 3 cut(s) 584, 722, 947
Alw21I GWGCWC 1 cut(s) 717
AlwI GGATC 1 cut(s) 825
Aor13HI TCCGGA 1 cut(s) 832
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 986
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 2 cut(s) 638, 921
AvaII GGWCC 2 cut(s) 638, 921
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 244, 324
BceAI ACGGC 2 cut(s) 62, 640
BciVI GTATCC 1 cut(s) 422
BfaI CTAG 3 cut(s) 51, 152, 483
BfmI CTRYAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 2 cut(s) 638, 921
BmgT120I GGNCC 2 cut(s) 638, 921
BmiI GGNNCC 2 cut(s) 57, 347
BpiI GAAGAC 1 cut(s) 307
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 957, 989
BpmI CTGGAG 1 cut(s) 817
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 202, 924
BsaWI WCCGGW 3 cut(s) 22, 832, 1008
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 356
Bse3DI GCAATG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 832
BseDI CCNNGG 2 cut(s) 202, 924
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 355, 356
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 3 cut(s) 62, 134, 618
BseRI GAGGAG 1 cut(s) 893
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 643
BshFI GGCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 717
BsiSI CCGG 3 cut(s) 23, 833, 1009
BslI CCNNNNNNNGG 2 cut(s) 355, 356
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 717
Bsp13I TCCGGA 1 cut(s) 832
Bsp143I GATC 6 cut(s) 16, 83, 196, 472, 817, 854
Bsp19I CCATGG 1 cut(s) 924
BspACI CCGC 2 cut(s) 641, 669
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 63, 133, 619
BspEI TCCGGA 1 cut(s) 832
BspFNI CGCG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 57, 347
BspPI GGATC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 202, 924
BssMI GATC 6 cut(s) 16, 83, 196, 472, 817, 854
BssNAI GTATAC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 202, 924
Bst1107I GTATAC 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 738
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 5 cut(s) 71, 120, 627, 718, 771
BstDSI CCRYGG 1 cut(s) 924
BstEII GGTNACC 1 cut(s) 323
BstFNI CGCG 1 cut(s) 643
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 6 cut(s) 19, 86, 199, 475, 820, 857
BstMBI GATC 6 cut(s) 16, 83, 196, 472, 817, 854
BstNSI RCATGY 1 cut(s) 689
BstPI GGTNACC 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 817
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 1 cut(s) 817
BstZ17I GTATAC 1 cut(s) 257
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 924
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 2 cut(s) 638, 921
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 739
CviAII CATG 5 cut(s) 160, 489, 686, 925, 1026
CviJI RGCY 8 cut(s) 29, 178, 300, 334, 584, 722, 781, 947
CviKI_1 RGCY 8 cut(s) 29, 178, 300, 334, 584, 722, 781, 947
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 5 cut(s) 71, 120, 627, 718, 771
DpnI GATC 6 cut(s) 18, 85, 198, 474, 819, 856
DpnII GATC 6 cut(s) 16, 83, 196, 472, 817, 854
DraI TTTAAA 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 202, 924
Eco32I GATATC 2 cut(s) 466, 971
Eco47I GGWCC 2 cut(s) 638, 921
Eco57I CTGAAG 1 cut(s) 301
Eco91I GGTNACC 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 323
EcoRV GATATC 2 cut(s) 466, 971
EcoT14I CCWWGG 2 cut(s) 202, 924
ErhI CCWWGG 2 cut(s) 202, 924
FaeI CATG 5 cut(s) 163, 492, 689, 928, 1029
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FatI CATG 5 cut(s) 159, 488, 685, 924, 1025
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 3 cut(s) 51, 152, 483
GlaI GCGC 1 cut(s) 644
GluI GCNGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 817
HaeIII GGCC 1 cut(s) 334
HapII CCGG 3 cut(s) 23, 833, 1009
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 645
Hin1II CATG 5 cut(s) 163, 492, 689, 928, 1029
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HinfI GANTC 2 cut(s) 207, 373
HpaII CCGG 3 cut(s) 23, 833, 1009
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 8 cut(s) 16, 72, 123, 320, 412, 428, 682, 992
Hpy188III TCNNGA 7 cut(s) 160, 500, 512, 796, 808, 833, 904
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 3 cut(s) 290, 487, 656
HpyCH4III ACNGT 1 cut(s) 738
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 488, 1075
HpyF3I CTNAG 5 cut(s) 71, 120, 627, 718, 771
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 5 cut(s) 163, 492, 689, 928, 1029
HspAI GCGC 1 cut(s) 643
Kpn2I TCCGGA 1 cut(s) 832
Kzo9I GATC 6 cut(s) 16, 83, 196, 472, 817, 854
LmnI GCTCC 2 cut(s) 589, 798
LpnPI CCDG 8 cut(s) 36, 341, 348, 351, 781, 846, 927, 1022
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 3 cut(s) 51, 152, 483
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 323, 688
MalI GATC 6 cut(s) 18, 85, 198, 474, 819, 856
MboI GATC 6 cut(s) 16, 83, 196, 472, 817, 854
MboII GAAGA 5 cut(s) 11, 50, 307, 859, 1044
MflI RGATCY 1 cut(s) 817
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 3 cut(s) 211, 802, 986
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 6 cut(s) 132, 314, 660, 781, 871, 959
MroI TCCGGA 1 cut(s) 832
MseI TTAA 4 cut(s) 62, 279, 477, 1035
MspI CCGG 3 cut(s) 23, 833, 1009
MvnI CGCG 1 cut(s) 643
NcoI CCATGG 1 cut(s) 924
NdeII GATC 6 cut(s) 16, 83, 196, 472, 817, 854
NlaIII CATG 5 cut(s) 163, 492, 689, 928, 1029
NlaIV GGNNCC 2 cut(s) 57, 347
NmuCI GTSAC 1 cut(s) 688
NspI RCATGY 1 cut(s) 689
PagI TCATGA 1 cut(s) 159
PciI ACATGT 1 cut(s) 685
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PscI ACATGT 1 cut(s) 685
PspEI GGTNACC 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 57, 347
PspPI GGNCC 2 cut(s) 638, 921
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
SaqAI TTAA 4 cut(s) 62, 279, 477, 1035
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 6 cut(s) 16, 83, 196, 472, 817, 854
Sau96I GGNCC 2 cut(s) 638, 921
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 717
SetI ASST 8 cut(s) 101, 325, 498, 586, 724, 792, 916, 949
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 2 cut(s) 638, 921
Sse9I AATT 3 cut(s) 211, 802, 986
SsiI CCGC 2 cut(s) 641, 669
SspI AATATT 1 cut(s) 1033
SspMI CTAG 3 cut(s) 51, 152, 483
StyI CCWWGG 2 cut(s) 202, 924
TaaI ACNGT 1 cut(s) 738
TaiI ACGT 1 cut(s) 101
TaqI TCGA 4 cut(s) 195, 270, 733, 853
TasI AATT 3 cut(s) 211, 802, 986
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 4 cut(s) 62, 279, 477, 1035
Tru9I TTAA 4 cut(s) 62, 279, 477, 1035
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 1 cut(s) 142
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 4 cut(s) 148, 278, 859, 924
VpaK11BI GGWCC 2 cut(s) 638, 921
XapI RAATTY 1 cut(s) 986
XceI RCATGY 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 256
XspI CTAG 3 cut(s) 51, 152, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.