AT3G18330

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
6291058 .. 6292320
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18330.1

Sequence Viewer

Length: 1131 bp
ATGCCGATGCCGAATCTTCCAAAGGAGTTGGTAGAGGAGATTCTCAGCTTTGTTCCGGCCACATATCTGAAACGTTTGAGCGCTACTTGCAAACCATGGAACCGTTTGATCCACAACGACAAGAGATTCGCGAGAAAGCACTACGATAACGCCGCAAAGGAGTTTCTGGTTTTCATGATGAGGAAGAACTTCAGGATTATTCGGAGAGGCGTCAATCTCCATGGAGCTGATCCATCTGCAGAGGTGAAAGGTGAACTTACCCTACCAGATCCGTATTTTAAGAACTCAGCTGATGAATTCCATATAGATAGAGTCTTTCACTGTGACGGCCTATTGTTATGCACCTCCAAACTCGAACGTAGAATGGTTGTTTGGAACCCGTTAACTGGTGAAACCAAGTGGATCCAAACCCACGAAGAAGGCGACAATTTTTTTCTCGGATACTCCCAAGAAGACAAGAACATATCCTGCAAAAAGAGCTACAAAATCATGGGGTTTTATCGTAGTGGTAGCAAAGTTTGGGAATACGATTTTAACTCTGATTCATGGAGGGTTCTTAATGGTATCCTTCCAAATTGGTACTTTGATAAATCTTATAAGTGCGTGTCTTTGAAGGGAAATACTTACATGCTTGCTGGAGCTGTAACAGATATGGGCTTTGACCTATCCTTGCAGAGTTACGATTTTTCAACAGAGAAATTTGCACCTGTGTCTCTTCCTGTTCCCTCTCAGGCCCGTAGTTTGAATGGTGCTAATCGTCTTTCCGTTGTTAGAGGAGAGAAACTCGCCTTGTTATATCGGCGAGATAAGAGATCCAAGGCTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAGCAGTTTCTTGGACCAAGGTCTTAGAATTGGATTTGAGCAGGGAGCTTCATGCCTTGTTTACTTCAAATTTCTTGGTAGACGAGGAGAAGAAAGTCTTCATTTGTTGTGTGAGTTGGAAGGAAGACGAAGACGAGAACAAGTCCAATAAAGTATACATTGTTGGGGAAGACAATATAGTCAAAGAAATTGATTCTGGAGAAGATGCAACCAGTGGATGTGAGCCAACTATTCTTAGTTTGTATGTTCCCAGTTTGGTCTACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

376

Amino Acids

43.31

Weight (kDa)

6.43

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 1.8e-08 F-box domain
F-box-like PF12937 4 - 46 1e-07 F-box-like
FBA_1 PF07734 58 - 375 7.8e-89 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AasI GACNNNNNNGTC 1 cut(s) 1040
AccI GTMKAC 3 cut(s) 942, 1017, 1122
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 153
AclI AACGTT 1 cut(s) 73
AclWI GGATC 6 cut(s) 103, 224, 263, 397, 410, 807
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 3 cut(s) 296, 698, 931
AcuI CTGAAG 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 581
AfeI AGCGCT 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 386
AflIII ACRYGT 1 cut(s) 1125
AgsI TTSAA 4 cut(s) 613, 690, 745, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 6 cut(s) 48, 227, 290, 480, 641, 910
AluI AGCT 6 cut(s) 48, 227, 290, 480, 641, 910
Alw26I GTCTC 1 cut(s) 717
AlwI GGATC 6 cut(s) 103, 224, 263, 397, 410, 807
Aor51HI AGCGCT 1 cut(s) 82
AoxI GGCC 3 cut(s) 57, 328, 732
ApoI RAATTY 3 cut(s) 296, 698, 931
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
Asp700I GAANNNNTTC 2 cut(s) 188, 959
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 733, 876
AsuHPI GGTGA 4 cut(s) 256, 263, 401, 844
AvaII GGWCC 1 cut(s) 876
BamHI GGATCC 1 cut(s) 402
BbsI GAAGAC 5 cut(s) 459, 952, 993, 999, 1038
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 343
BciVI GTATCC 2 cut(s) 434, 575
BcoDI GTCTC 1 cut(s) 717
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 2 cut(s) 434, 575
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 876
BmgT120I GGNCC 2 cut(s) 733, 876
BmiI GGNNCC 3 cut(s) 101, 377, 404
BmrI ACTGGG 1 cut(s) 1107
BmsI GCATC 1 cut(s) 1057
BmuI ACTGGG 1 cut(s) 1107
BoxI GACNNNNGTC 1 cut(s) 881
BpiI GAAGAC 5 cut(s) 459, 952, 993, 999, 1038
BplI GAGNNNNNCTC 2 cut(s) 768, 800
BpmI CTGGAG 2 cut(s) 657, 1080
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 95, 220, 816, 879
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 3 cut(s) 391, 1074, 1113
BseDI CCNNGG 4 cut(s) 95, 220, 816, 879
BseGI GGATG 1 cut(s) 1085
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 4 cut(s) 58, 300, 743, 813
BseNI ACTGG 3 cut(s) 391, 1074, 1113
BseRI GAGGAG 3 cut(s) 50, 789, 962
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 3 cut(s) 59, 330, 734
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 717
BsnI GGCC 3 cut(s) 59, 330, 734
Bsp143I GATC 5 cut(s) 108, 229, 268, 402, 812
Bsp19I CCATGG 2 cut(s) 95, 220
Bsp68I TCGCGA 1 cut(s) 131
BspACI CCGC 1 cut(s) 153
BspANI GGCC 3 cut(s) 59, 330, 734
BspCNI CTCAG 4 cut(s) 57, 299, 742, 814
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 3 cut(s) 101, 377, 404
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 6 cut(s) 103, 224, 263, 397, 410, 807
BsrI ACTGG 3 cut(s) 391, 1074, 1113
BssECI CCNNGG 4 cut(s) 95, 220, 816, 879
BssMI GATC 5 cut(s) 108, 229, 268, 402, 812
BssNAI GTATAC 1 cut(s) 1018
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 4 cut(s) 95, 220, 816, 879
Bst1107I GTATAC 1 cut(s) 1018
Bst4CI ACNGT 2 cut(s) 104, 323
Bst6I CTCTTC 1 cut(s) 720
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 6 cut(s) 44, 286, 729, 822, 886, 1097
BstDSI CCRYGG 2 cut(s) 95, 220
BstF5I GGATG 1 cut(s) 1085
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 5 cut(s) 111, 232, 271, 405, 815
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 5 cut(s) 108, 229, 268, 402, 812
BstMWI GCNNNNNNNGC 2 cut(s) 87, 477
BstNSI RCATGY 2 cut(s) 631, 1129
BstPAI GACNNNNGTC 1 cut(s) 881
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 5 cut(s) 459, 952, 993, 999, 1038
BstX2I RGATCY 3 cut(s) 268, 402, 812
BstYI RGATCY 3 cut(s) 268, 402, 812
BstZ17I GTATAC 1 cut(s) 1018
BsuI GTATCC 2 cut(s) 434, 575
BsuRI GGCC 3 cut(s) 59, 330, 734
BtgI CCRYGG 2 cut(s) 95, 220
BtsCI GGATG 1 cut(s) 1085
BtsIMutI CAGTG 2 cut(s) 319, 1081
BtuMI TCGCGA 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 633
CciI TCATGA 1 cut(s) 174
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 733, 876
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 580
CviAII CATG 8 cut(s) 96, 175, 221, 490, 546, 628, 914, 1126
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 6 cut(s) 44, 286, 729, 822, 886, 1097
DpnI GATC 5 cut(s) 110, 231, 270, 404, 814
DpnII GATC 5 cut(s) 108, 229, 268, 402, 812
DrdI GACNNNNNNGTC 1 cut(s) 1040
DseDI GACNNNNNNGTC 1 cut(s) 1040
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Eco130I CCWWGG 4 cut(s) 95, 220, 816, 879
Eco47I GGWCC 1 cut(s) 876
Eco47III AGCGCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 296
EcoT14I CCWWGG 4 cut(s) 95, 220, 816, 879
ErhI CCWWGG 4 cut(s) 95, 220, 816, 879
FaeI CATG 8 cut(s) 99, 178, 224, 493, 549, 631, 917, 1129
FalI AAGNNNNNCTT 4 cut(s) 240, 272, 944, 976
FatI CATG 8 cut(s) 95, 174, 220, 489, 545, 627, 913, 1125
FblI GTMKAC 3 cut(s) 942, 1017, 1122
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 1092
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 657, 1080
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 3 cut(s) 59, 330, 734
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 8 cut(s) 99, 178, 224, 493, 549, 631, 917, 1129
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 6 cut(s) 13, 40, 126, 312, 542, 1055
HpaI GTTAAC 1 cut(s) 384
HpaII CCGG 1 cut(s) 56
HphI GGTGA 4 cut(s) 256, 263, 401, 844
Hpy166II GTNNAC 6 cut(s) 254, 384, 924, 943, 1018, 1123
Hpy188I TCNGA 4 cut(s) 69, 204, 440, 541
Hpy188III TCNNGA 4 cut(s) 130, 175, 193, 1059
Hpy8I GTNNAC 6 cut(s) 254, 384, 924, 943, 1018, 1123
HpyAV CCTTC 5 cut(s) 413, 578, 607, 854, 976
HpyCH4III ACNGT 2 cut(s) 104, 323
HpyCH4IV ACGT 2 cut(s) 73, 358
HpyCH4V TGCA 7 cut(s) 90, 239, 342, 471, 673, 704, 1070
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 477
HpyF3I CTNAG 6 cut(s) 44, 286, 729, 822, 886, 1097
HpySE526I ACGT 2 cut(s) 73, 358
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 8 cut(s) 99, 178, 224, 493, 549, 631, 917, 1129
HspAI GCGC 1 cut(s) 81
KspAI GTTAAC 1 cut(s) 384
Kzo9I GATC 5 cut(s) 108, 229, 268, 402, 812
LmnI GCTCC 4 cut(s) 224, 638, 863, 907
LweI GCATC 1 cut(s) 1057
MaeII ACGT 2 cut(s) 73, 358
MaeIII GTNAC 4 cut(s) 323, 643, 677, 832
MalI GATC 5 cut(s) 110, 231, 270, 404, 814
MboI GATC 5 cut(s) 108, 229, 268, 402, 812
MflI RGATCY 3 cut(s) 268, 402, 812
MluCI AATT 7 cut(s) 296, 427, 574, 698, 890, 931, 1050
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 959
MnlI CCTC 9 cut(s) 28, 174, 200, 235, 355, 543, 736, 767, 940
MroXI GAANNNNTTC 2 cut(s) 188, 959
MseI TTAA 4 cut(s) 279, 383, 534, 558
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 87, 477
NcoI CCATGG 2 cut(s) 95, 220
NdeII GATC 5 cut(s) 108, 229, 268, 402, 812
NlaIII CATG 8 cut(s) 99, 178, 224, 493, 549, 631, 917, 1129
NlaIV GGNNCC 3 cut(s) 101, 377, 404
NmuCI GTSAC 2 cut(s) 323, 832
NruI TCGCGA 1 cut(s) 131
NspI RCATGY 2 cut(s) 631, 1129
PagI TCATGA 1 cut(s) 174
PciI ACATGT 1 cut(s) 1125
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PdmI GAANNNNTTC 2 cut(s) 188, 959
PfeI GAWTC 5 cut(s) 13, 40, 126, 542, 1055
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PscI ACATGT 1 cut(s) 1125
PshAI GACNNNNGTC 1 cut(s) 881
PsiI TTATAA 1 cut(s) 597
Psp1406I AACGTT 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 101, 377, 404
PspPI GGNCC 2 cut(s) 733, 876
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 3 cut(s) 268, 402, 812
PvuII CAGCTG 1 cut(s) 290
RruI TCGCGA 1 cut(s) 131
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SaqAI TTAA 4 cut(s) 279, 383, 534, 558
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 5 cut(s) 108, 229, 268, 402, 812
Sau96I GGNCC 2 cut(s) 733, 876
SchI GAGTC 1 cut(s) 321
SfaNI GCATC 1 cut(s) 1057
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 876
Sse9I AATT 7 cut(s) 296, 427, 574, 698, 890, 931, 1050
SsiI CCGC 1 cut(s) 153
StyI CCWWGG 4 cut(s) 95, 220, 816, 879
TaaI ACNGT 2 cut(s) 104, 323
TaiI ACGT 2 cut(s) 76, 361
TaqI TCGA 1 cut(s) 354
TasI AATT 7 cut(s) 296, 427, 574, 698, 890, 931, 1050
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 13, 40, 126, 542, 1055
Tru1I TTAA 4 cut(s) 279, 383, 534, 558
Tru9I TTAA 4 cut(s) 279, 383, 534, 558
TscAI CASTG 2 cut(s) 326, 1081
TseFI GTSAC 2 cut(s) 323, 832
Tsp45I GTSAC 2 cut(s) 323, 832
TspDTI ATGAA 5 cut(s) 163, 309, 534, 902, 952
TspGWI ACGGA 2 cut(s) 261, 754
TspRI CASTG 2 cut(s) 326, 1081
VpaK11BI GGWCC 1 cut(s) 876
XapI RAATTY 3 cut(s) 296, 698, 931
XceI RCATGY 2 cut(s) 631, 1129
XmiI GTMKAC 3 cut(s) 942, 1017, 1122
XmnI GAANNNNTTC 2 cut(s) 188, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.