FvH4_1g21382

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000063
Physical Location & Seq
Forward (+)
13336362 .. 13339007
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21382.t1

Sequence Viewer

Length: 2007 bp
ATGGGGTTCTCGGCAGAAGACGAAGCTTTGAAGTTCTCTAAGAAATATAACGAGGCCTTGACCACAGTGCGTGAAAAAATGAAAACAGGGGAAATCCAAATGTTGGCCGCGCAAACTTTGCCAACAACACCAGGATCAGCCACACCAACTCCACTGGCTTGTTCCCTAGGTCCTCACTTTCCTGAAGGCATGCCCCCTAAGATCTCGAAAGTTCTCTGCCAGGAAGAATTAGATGACTCTTGTCACTTTACTGAGCATGAGTGGTCTTCATGGTCTTGCTCAAGGCCTGATGGTTGGCCAACCCTAACAGATGAATGGCAAGCATGGGTTCCAAGAATGGAGCACTTTTATGCCGATCATTGGAAAAGAATCGGCATTTATGACGCCATCAAACTCACCGAGCAAGACATAGTAGTAGAGAAACCGCTATTGGCCGCGGCTCTATGTTTTTGGTCCTCAGCTACGAACACAATGAACCTACCATTGGGTCATATGAGTCCAACAGTCATGGACATGTGTATACTCATCGGATTGCAGCCAATCGGGGCCGAAATCAACCCAAGTCACAATTTTCCTACTACCTTCAGAGATAGTTTACTTCCTCCCAAACGCGCGAAAGACCATGACAAGGAAGCAAAAACGGAAGCTATTAAAGCATCAAAAAGATCGCGCAACTACTGCTCTTTGTATAAGAAATATGCAGTTGTTGACTCCGAGCCTGCGAACCGAAGACCTGTAGGGAAGGATGAACACACGGCGTTTTTATATTATTGGCTATGTAAAACTTTACACAACATTGTGACTAACGACATGGATCTTAACATTGGCGGACCATTGTGGATGTTCCAACTGTGGTTGCGAGCATACCTCCCTCATACATCAGCCTCGGAACTGGAACTGGCCACGTGGAGATTGGCATTTCTTGCTACCAACAAAGAGTCAGAAAAGAACGTGTCTGATGAGGAATGGAGAACATCTTGGGGCAGCTTTGTGATTTCACGAGACTTGCATCATGGGTTGACACTCAATACACACTCTAAGCCTGGAGTAGAAGTTTACCTTCCCAACTATTTTGCTCGTCAATTCGGATGCATCCAAAGCTGTCTCGTCCTTTACAAGAACTCACTGAATCTTTTAACCTCATGGCACCGAAAGGTGCACACAAAAGATATGTGTGACTCAGTTTCACGACGGTACCATGATCGCCTCAATCGTTTTAAGTTGGAAGGCTTCCAATTGAATTCCGCAGCCACTCCTACTTTCGTCTCTTGGTGGGCAGACTTTTCTACGAAATTTGTGGATCCAGAATATAAAGATATGTTTACAGAGCGGATCGTCCAAGGAGTTGGAGATATTCTTCTGAACCAAACTGGTCACAAGAGAAAACGGGCTTTTGTTGGTCACTGTAACGAGCTATCAACACCCAGGCAACGAAGCTCTGGACCGTACGAGCATGAGAACACCAGCCAAACGCAAAGTACTCACACCAAAATGACTGCCATTCAACCTAGTACTTCCAGCCAATCGAATCTTCTTACAGACCTATTGCCCGCAGACACCATGGCTTTCTTGGACGAACTTGCAGGGCAACTTGAAGTGCCACAAAATCATAATTTGAGAGAGGAGAGTGGAATAAGACGTGACCCGCGGGAACAGAGGGCGGCTGAGTTCGTTTCTGTGCATTGTCGTAAACCGCTTATGACCATCGTTGAGCAAGGTGTTTATGACCGTTTCAAACAAGAATTGACATTCTTGATCTCACTTAACCATTTCACTCTTGAACGCACTCAGCAGATCGAAAGTCATCTCAGGGTCATAGACGCGAGCATTGATGCCTTTTCACAAACATTGGAAAAATGGGACACCGGCCGCGTGCTAGAGCAAAAATATGGACTCATTGTCAAGCGACAATCTTCATGCGCCGCGAAACTCACCCAAATGCGACATGAACTCAAGGCCGATGCCAAGAAGTTGGCCGAGTTGGAAAGTCAAATGAAAACGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase cNMP_binding

Protein Analysis

669

Amino Acids

76.49

Weight (kDa)

6.96

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 125 - 264 1.5e-13 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1194
AccB1I GGYRCC 2 cut(s) 1146, 1194
AccB7I CCANNNNNTGG 1 cut(s) 103
AccBSI CCGCTC 1 cut(s) 1330
AccI GTMKAC 1 cut(s) 520
AccII CGCG 9 cut(s) 110, 437, 612, 614, 670, 1648, 1823, 1872, 1925
AclWI GGATC 5 cut(s) 142, 822, 1295, 1308, 1340
AcoI YGGCCR 6 cut(s) 105, 296, 432, 900, 1867, 1974
AcsI RAATTY 2 cut(s) 1240, 1292
AcuI CTGAAG 2 cut(s) 204, 568
AcvI CACGTG 1 cut(s) 906
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 4 cut(s) 1196, 1448, 1480, 1513
AfiI CCNNNNNNNGG 4 cut(s) 103, 360, 484, 628
AflIII ACRYGT 2 cut(s) 513, 951
AgsI TTSAA 6 cut(s) 31, 1240, 1505, 1595, 1735, 1781
AhdI GACNNNNNGTC 1 cut(s) 1898
AjiI CACGTC 1 cut(s) 1640
AjnI CCWGG 4 cut(s) 130, 219, 1042, 1424
AjuI GAANNNNNNNTTGG 6 cut(s) 413, 445, 467, 499, 1515, 1547
AluBI AGCT 7 cut(s) 26, 461, 647, 987, 1101, 1414, 1437
AluI AGCT 7 cut(s) 26, 461, 647, 987, 1101, 1414, 1437
Alw21I GWGCWC 2 cut(s) 345, 1161
Alw26I GTCTC 3 cut(s) 996, 1109, 1270
Alw44I GTGCAC 1 cut(s) 1157
AlwI GGATC 5 cut(s) 142, 822, 1295, 1308, 1340
ApaLI GTGCAC 1 cut(s) 1157
ApeKI GCWGC 3 cut(s) 535, 984, 1247
ApoI RAATTY 2 cut(s) 1240, 1292
Asp718I GGTACC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 166
AspLEI GCGC 4 cut(s) 112, 614, 672, 1922
AspS9I GGNCC 5 cut(s) 170, 453, 546, 830, 1442
AsuHPI GGTGA 2 cut(s) 388, 1924
AvaII GGWCC 4 cut(s) 170, 453, 830, 1442
AvrII CCTAGG 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 1161
BaeI ACNNNNGTAYC 2 cut(s) 1178, 1211
BalI TGGCCA 2 cut(s) 298, 902
BamHI GGATCC 1 cut(s) 1300
BanI GGYRCC 2 cut(s) 1146, 1194
BauI CACGAG 1 cut(s) 999
BbrPI CACGTG 1 cut(s) 906
BbsI GAAGAC 3 cut(s) 24, 258, 736
Bbv12I GWGCWC 2 cut(s) 345, 1161
BbvCI CCTCAGC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 547, 996, 1259
BccI CCATC 3 cut(s) 284, 395, 1712
BceAI ACGGC 1 cut(s) 771
BciT130I CCWGG 4 cut(s) 132, 221, 1044, 1426
BcoDI GTCTC 3 cut(s) 996, 1109, 1270
BfaI CTAG 3 cut(s) 167, 1509, 1877
BfmI CTRYAG 1 cut(s) 735
BglII AGATCT 1 cut(s) 201
BisI GCNGC 9 cut(s) 108, 435, 438, 536, 985, 1248, 1662, 1870, 1923
BlnI CCTAGG 1 cut(s) 166
BlsI GCNGC 9 cut(s) 109, 436, 439, 537, 986, 1249, 1663, 1871, 1924
BmcAI AGTACT 2 cut(s) 1480, 1513
Bme1390I CCNGG 4 cut(s) 132, 221, 1044, 1426
Bme18I GGWCC 4 cut(s) 170, 453, 830, 1442
BmeRI GACNNNNNGTC 1 cut(s) 1898
BmgBI CACGTC 1 cut(s) 1640
BmgT120I GGNCC 5 cut(s) 170, 453, 546, 830, 1442
BmiI GGNNCC 5 cut(s) 330, 547, 1148, 1196, 1302
BmrFI CCNGG 4 cut(s) 132, 221, 1044, 1426
BmsI GCATC 6 cut(s) 665, 1018, 1079, 1101, 1822, 1951
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 3 cut(s) 24, 258, 736
BplI GAGNNNNNCTC 2 cut(s) 852, 884
BpmI CTGGAG 1 cut(s) 1065
Bpu10I CCTNAGC 1 cut(s) 457
BpuEI CTTGAG 2 cut(s) 265, 1937
BsaAI YACGTR 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 7 cut(s) 166, 435, 885, 1339, 1424, 1560, 1646
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 1038, 1068
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 360, 484, 628
Bse118I RCCGGY 1 cut(s) 1865
Bse1I ACTGG 4 cut(s) 159, 897, 903, 1375
BseBI CCWGG 4 cut(s) 132, 221, 1044, 1426
BseDI CCNNGG 7 cut(s) 166, 435, 885, 1339, 1424, 1560, 1646
BseGI GGATG 4 cut(s) 751, 846, 1092, 1094
BseLI CCNNNNNNNGG 4 cut(s) 103, 360, 484, 628
BseMII CTCAG 6 cut(s) 243, 471, 1194, 1656, 1802, 1822
BseNI ACTGG 4 cut(s) 159, 897, 903, 1375
BseRI GAGGAG 1 cut(s) 1637
BseSI GKGCMC 1 cut(s) 1161
BseX3I CGGCCG 1 cut(s) 1867
BseXI GCAGC 3 cut(s) 547, 996, 1259
Bsh1236I CGCG 9 cut(s) 110, 437, 612, 614, 670, 1648, 1823, 1872, 1925
Bsh1285I CGRYCG 1 cut(s) 1870
BshNI GGYRCC 2 cut(s) 1146, 1194
BsiEI CGRYCG 1 cut(s) 1870
BsiHKAI GWGCWC 2 cut(s) 345, 1161
BsiSI CCGG 1 cut(s) 1866
BsiWI CGTACG 1 cut(s) 1446
BslFI GGGAC 1 cut(s) 1874
BslI CCNNNNNNNGG 4 cut(s) 103, 360, 484, 628
BsmAI GTCTC 3 cut(s) 996, 1109, 1270
BsmBI CGTCTC 1 cut(s) 1270
BsmFI GGGAC 1 cut(s) 1874
Bsp1286I GDGCHC 2 cut(s) 345, 1161
Bsp19I CCATGG 1 cut(s) 1560
BspCNI CTCAG 6 cut(s) 244, 470, 1193, 1657, 1801, 1821
BspFNI CGCG 9 cut(s) 110, 437, 612, 614, 670, 1648, 1823, 1872, 1925
BspLI GGNNCC 5 cut(s) 330, 547, 1148, 1196, 1302
BspPI GGATC 5 cut(s) 142, 822, 1295, 1308, 1340
BspT107I GGYRCC 2 cut(s) 1146, 1194
BsrBI CCGCTC 1 cut(s) 1330
BsrFI RCCGGY 1 cut(s) 1865
BsrI ACTGG 4 cut(s) 159, 897, 903, 1375
BssAI RCCGGY 1 cut(s) 1865
BssECI CCNNGG 7 cut(s) 166, 435, 885, 1339, 1424, 1560, 1646
BssNAI GTATAC 1 cut(s) 521
BssNI GRCGYC 1 cut(s) 384
BssSI CACGAG 1 cut(s) 999
BssT1I CCWWGG 3 cut(s) 166, 1339, 1560
Bst1107I GTATAC 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 999
Bst2UI CCWGG 4 cut(s) 132, 221, 1044, 1426
Bst4CI ACNGT 7 cut(s) 67, 505, 852, 1194, 1406, 1446, 1730
BstACI GRCGYC 1 cut(s) 384
BstAPI GCANNNNNTGC 3 cut(s) 118, 678, 923
BstBAI YACGTR 1 cut(s) 906
BstC8I GCNNGC 7 cut(s) 191, 321, 720, 861, 1551, 1825, 1874
BstDEI CTNAG 9 cut(s) 39, 198, 252, 457, 1038, 1180, 1665, 1788, 1808
BstDSI CCRYGG 3 cut(s) 435, 1560, 1646
BstF5I GGATG 4 cut(s) 751, 846, 1092, 1094
BstFNI CGCG 9 cut(s) 110, 437, 612, 614, 670, 1648, 1823, 1872, 1925
BstHHI GCGC 4 cut(s) 112, 614, 672, 1922
BstMAI GTCTC 3 cut(s) 996, 1109, 1270
BstMCI CGRYCG 1 cut(s) 1870
BstMWI GCNNNNNNNGC 5 cut(s) 118, 653, 678, 923, 1098
BstNI CCWGG 4 cut(s) 132, 221, 1044, 1426
BstNSI RCATGY 2 cut(s) 193, 517
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 4 cut(s) 130, 219, 1042, 1424
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 1161
BstUI CGCG 9 cut(s) 110, 437, 612, 614, 670, 1648, 1823, 1872, 1925
BstV1I GCAGC 3 cut(s) 547, 996, 1259
BstV2I GAAGAC 3 cut(s) 24, 258, 736
BstX2I RGATCY 3 cut(s) 201, 814, 1300
BstXI CCANNNNNNTGG 2 cut(s) 1346, 1972
BstYI RGATCY 3 cut(s) 201, 814, 1300
BstZ17I GTATAC 1 cut(s) 521
BstZI CGGCCG 1 cut(s) 1867
BtgI CCRYGG 3 cut(s) 435, 1560, 1646
BtrI CACGTC 1 cut(s) 1640
BtsCI GGATG 4 cut(s) 751, 846, 1092, 1094
BtsIMutI CAGTG 4 cut(s) 72, 152, 1124, 1402
Cac8I GCNNGC 7 cut(s) 191, 321, 720, 861, 1551, 1825, 1874
CfoI GCGC 4 cut(s) 112, 614, 672, 1922
Cfr10I RCCGGY 1 cut(s) 1865
Cfr13I GGNCC 5 cut(s) 170, 453, 546, 830, 1442
Cfr42I CCGCGG 2 cut(s) 438, 1649
CseI GACGC 2 cut(s) 392, 1829
Csp6I GTAC 4 cut(s) 1195, 1447, 1479, 1512
CviQI GTAC 4 cut(s) 1195, 1447, 1479, 1512
DdeI CTNAG 9 cut(s) 39, 198, 252, 457, 1038, 1180, 1665, 1788, 1808
DriI GACNNNNNGTC 1 cut(s) 1898
EaeI YGGCCR 6 cut(s) 105, 296, 432, 900, 1867, 1974
EagI CGGCCG 1 cut(s) 1867
Eam1105I GACNNNNNGTC 1 cut(s) 1898
EciI GGCGGA 1 cut(s) 843
EclXI CGGCCG 1 cut(s) 1867
Eco130I CCWWGG 3 cut(s) 166, 1339, 1560
Eco147I AGGCCT 2 cut(s) 56, 286
Eco47I GGWCC 4 cut(s) 170, 453, 830, 1442
Eco52I CGGCCG 1 cut(s) 1867
Eco57I CTGAAG 2 cut(s) 204, 568
Eco72I CACGTG 1 cut(s) 906
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 1240
EcoRII CCWGG 4 cut(s) 130, 219, 1042, 1424
EcoT14I CCWWGG 3 cut(s) 166, 1339, 1560
EcoT22I ATGCAT 1 cut(s) 1094
ErhI CCWWGG 3 cut(s) 166, 1339, 1560
Esp3I CGTCTC 1 cut(s) 1270
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 1 cut(s) 1874
FauI CCCGC 3 cut(s) 1558, 1641, 1653
FauNDI CATATG 1 cut(s) 492
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 9 cut(s) 108, 435, 438, 536, 985, 1248, 1662, 1870, 1923
FokI GGATG 4 cut(s) 758, 853, 1079, 1101
Fsp4HI GCNGC 9 cut(s) 108, 435, 438, 536, 985, 1248, 1662, 1870, 1923
FspBI CTAG 3 cut(s) 167, 1509, 1877
GlaI GCGC 4 cut(s) 111, 613, 671, 1921
GluI GCNGC 9 cut(s) 108, 435, 438, 536, 985, 1248, 1662, 1870, 1923
GsuI CTGGAG 1 cut(s) 1065
HapII CCGG 1 cut(s) 1866
HgaI GACGC 2 cut(s) 392, 1829
HhaI GCGC 4 cut(s) 112, 614, 672, 1922
Hin1I GRCGYC 1 cut(s) 384
Hin6I GCGC 4 cut(s) 110, 612, 670, 1920
HinP1I GCGC 4 cut(s) 110, 612, 670, 1920
HincII GTYRAC 2 cut(s) 709, 1020
HindII GTYRAC 2 cut(s) 709, 1020
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 9 cut(s) 236, 369, 496, 710, 938, 1129, 1178, 1528, 1893
HpaII CCGG 1 cut(s) 1866
HphI GGTGA 2 cut(s) 388, 1924
Hpy166II GTNNAC 8 cut(s) 521, 596, 709, 1020, 1057, 1159, 1323, 1691
Hpy188I TCNGA 8 cut(s) 530, 587, 715, 889, 943, 958, 1088, 1362
Hpy188III TCNNGA 8 cut(s) 182, 205, 999, 1188, 1304, 1440, 1753, 1778
Hpy8I GTNNAC 8 cut(s) 521, 596, 709, 1020, 1057, 1159, 1323, 1691
Hpy99I CGWCG 1 cut(s) 1194
HpyAV CCTTC 5 cut(s) 179, 592, 736, 1070, 1220
HpyCH4III ACNGT 7 cut(s) 67, 505, 852, 1194, 1406, 1446, 1730
HpyCH4IV ACGT 3 cut(s) 905, 951, 1639
HpyCH4V TGCA 7 cut(s) 535, 701, 1009, 1092, 1159, 1583, 1681
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 653, 678, 923, 1098
HpyF3I CTNAG 9 cut(s) 39, 198, 252, 457, 1038, 1180, 1665, 1788, 1808
HpySE526I ACGT 3 cut(s) 905, 951, 1639
Hsp92I GRCGYC 1 cut(s) 384
HspAI GCGC 4 cut(s) 110, 612, 670, 1920
KpnI GGTACC 1 cut(s) 1198
KspI CCGCGG 2 cut(s) 438, 1649
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 3 cut(s) 547, 996, 1259
LweI GCATC 6 cut(s) 665, 1018, 1079, 1101, 1822, 1951
MaeI CTAG 3 cut(s) 167, 1509, 1877
MaeII ACGT 3 cut(s) 905, 951, 1639
MaeIII GTNAC 8 cut(s) 242, 563, 799, 1175, 1373, 1400, 1406, 1640
MbiI CCGCTC 1 cut(s) 1330
MboII GAAGA 7 cut(s) 29, 236, 258, 741, 1349, 1523, 1905
MfeI CAATTG 1 cut(s) 1235
MflI RGATCY 3 cut(s) 201, 814, 1300
MhlI GDGCHC 2 cut(s) 345, 1161
MlsI TGGCCA 2 cut(s) 298, 902
MluCI AATT 8 cut(s) 227, 568, 1082, 1235, 1240, 1292, 1612, 1742
MluNI TGGCCA 2 cut(s) 298, 902
MlyI GAGTC 6 cut(s) 230, 505, 704, 947, 1172, 1887
MmeI TCCRAC 5 cut(s) 524, 871, 1203, 1327, 1962
Mox20I TGGCCA 2 cut(s) 298, 902
Mph1103I ATGCAT 1 cut(s) 1094
MscI TGGCCA 2 cut(s) 298, 902
MseI TTAA 5 cut(s) 651, 819, 1136, 1218, 1764
MslI CAYNNNNRTG 4 cut(s) 348, 512, 1490, 1937
Msp20I TGGCCA 2 cut(s) 298, 902
MspA1I CMGCKG 2 cut(s) 437, 1648
MspI CCGG 1 cut(s) 1866
MspR9I CCNGG 4 cut(s) 132, 221, 1044, 1426
MunI CAATTG 1 cut(s) 1235
MvaI CCWGG 4 cut(s) 132, 221, 1044, 1426
MvnI CGCG 9 cut(s) 110, 437, 612, 614, 670, 1648, 1823, 1872, 1925
MwoI GCNNNNNNNGC 5 cut(s) 118, 653, 678, 923, 1098
NcoI CCATGG 1 cut(s) 1560
NdeI CATATG 1 cut(s) 492
NlaIV GGNNCC 5 cut(s) 330, 547, 1148, 1196, 1302
NmeAIII GCCGAG 1 cut(s) 2002
NmuCI GTSAC 7 cut(s) 242, 563, 799, 1175, 1373, 1400, 1640
NsiI ATGCAT 1 cut(s) 1094
NspI RCATGY 2 cut(s) 193, 517
PaeI GCATGC 1 cut(s) 193
PceI AGGCCT 2 cut(s) 56, 286
PciI ACATGT 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 1210
PfeI GAWTC 3 cut(s) 369, 1129, 1528
Pfl23II CGTACG 1 cut(s) 1446
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 9 cut(s) 109, 436, 439, 537, 986, 1249, 1663, 1871, 1924
PleI GAGTC 6 cut(s) 230, 504, 704, 946, 1172, 1887
PmaCI CACGTG 1 cut(s) 906
PmlI CACGTG 1 cut(s) 906
PpsI GAGTC 6 cut(s) 230, 504, 704, 946, 1172, 1887
Ppu21I YACGTR 1 cut(s) 906
PpuMI RGGWCCY 1 cut(s) 170
PscI ACATGT 1 cut(s) 513
PshAI GACNNNNGTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 4 cut(s) 130, 219, 1042, 1424
PspCI CACGTG 1 cut(s) 906
PspGI CCWGG 4 cut(s) 130, 219, 1042, 1424
PspLI CGTACG 1 cut(s) 1446
PspN4I GGNNCC 5 cut(s) 330, 547, 1148, 1196, 1302
PspPI GGNCC 5 cut(s) 170, 453, 546, 830, 1442
PspPPI RGGWCCY 1 cut(s) 170
PsuI RGATCY 3 cut(s) 201, 814, 1300
RsaI GTAC 4 cut(s) 1196, 1448, 1480, 1513
RsaNI GTAC 4 cut(s) 1195, 1447, 1479, 1512
RseI CAYNNNNRTG 4 cut(s) 348, 512, 1490, 1937
SacII CCGCGG 2 cut(s) 438, 1649
SaqAI TTAA 5 cut(s) 651, 819, 1136, 1218, 1764
SatI GCNGC 9 cut(s) 108, 435, 438, 536, 985, 1248, 1662, 1870, 1923
Sau96I GGNCC 5 cut(s) 170, 453, 546, 830, 1442
ScaI AGTACT 2 cut(s) 1480, 1513
SchI GAGTC 6 cut(s) 230, 505, 704, 947, 1172, 1887
ScrFI CCNGG 4 cut(s) 132, 221, 1044, 1426
SduI GDGCHC 2 cut(s) 345, 1161
SfaNI GCATC 6 cut(s) 665, 1018, 1079, 1101, 1822, 1951
SfcI CTRYAG 1 cut(s) 735
Sfr303I CCGCGG 2 cut(s) 438, 1649
SgrBI CCGCGG 2 cut(s) 438, 1649
SinI GGWCC 4 cut(s) 170, 453, 830, 1442
SmiMI CAYNNNNRTG 4 cut(s) 348, 512, 1490, 1937
SmlI CTYRAG 2 cut(s) 280, 1952
SmoI CTYRAG 2 cut(s) 280, 1952
SphI GCATGC 1 cut(s) 193
Sse9I AATT 8 cut(s) 227, 568, 1082, 1235, 1240, 1292, 1612, 1742
SseBI AGGCCT 2 cut(s) 56, 286
SspMI CTAG 3 cut(s) 167, 1509, 1877
StuI AGGCCT 2 cut(s) 56, 286
StyD4I CCNGG 4 cut(s) 130, 219, 1042, 1424
StyI CCWWGG 3 cut(s) 166, 1339, 1560
TaaI ACNGT 7 cut(s) 67, 505, 852, 1194, 1406, 1446, 1730
TaiI ACGT 3 cut(s) 908, 954, 1642
TaqI TCGA 3 cut(s) 206, 1526, 1797
TasI AATT 8 cut(s) 227, 568, 1082, 1235, 1240, 1292, 1612, 1742
TatI WGTACW 2 cut(s) 1478, 1511
TauI GCSGC 6 cut(s) 110, 437, 440, 1664, 1872, 1925
TfiI GAWTC 3 cut(s) 369, 1129, 1528
Tru1I TTAA 5 cut(s) 651, 819, 1136, 1218, 1764
Tru9I TTAA 5 cut(s) 651, 819, 1136, 1218, 1764
TscAI CASTG 4 cut(s) 72, 159, 1131, 1409
TseFI GTSAC 7 cut(s) 242, 563, 799, 1175, 1373, 1400, 1640
TseI GCWGC 3 cut(s) 535, 984, 1247
Tsp45I GTSAC 7 cut(s) 242, 563, 799, 1175, 1373, 1400, 1640
TspDTI ATGAA 7 cut(s) 95, 258, 327, 488, 762, 1905, 1962
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 4 cut(s) 72, 159, 1131, 1409
Van91I CCANNNNNTGG 1 cut(s) 103
VneI GTGCAC 1 cut(s) 1157
VpaK11BI GGWCC 4 cut(s) 170, 453, 830, 1442
XapI RAATTY 2 cut(s) 1240, 1292
XceI RCATGY 2 cut(s) 193, 517
XcmI CCANNNNNNNNNTGG 2 cut(s) 910, 1567
XmaJI CCTAGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 520
XspI CTAG 3 cut(s) 167, 1509, 1877
ZrmI AGTACT 2 cut(s) 1480, 1513
Zsp2I ATGCAT 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.