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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 678 |
| AciI | CCGC | 4 cut(s) | 493, 535, 589, 729 |
| AcsI | RAATTY | 2 cut(s) | 32, 554 |
| AcuI | CTGAAG | 1 cut(s) | 221 |
| AfaI | GTAC | 3 cut(s) | 69, 282, 340 |
| AgsI | TTSAA | 6 cut(s) | 17, 74, 332, 541, 605, 723 |
| AjnI | CCWGG | 1 cut(s) | 181 |
| AluBI | AGCT | 3 cut(s) | 56, 409, 470 |
| AluI | AGCT | 3 cut(s) | 56, 409, 470 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 470 |
| AoxI | GGCC | 5 cut(s) | 136, 196, 204, 387, 726 |
| ApeKI | GCWGC | 2 cut(s) | 376, 467 |
| ApoI | RAATTY | 2 cut(s) | 32, 554 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 252 |
| AspLEI | GCGC | 1 cut(s) | 680 |
| AspS9I | GGNCC | 2 cut(s) | 137, 698 |
| AsuC2I | CCSGG | 1 cut(s) | 195 |
| AsuHPI | GGTGA | 2 cut(s) | 236, 730 |
| AvaII | GGWCC | 1 cut(s) | 698 |
| BbsI | GAAGAC | 3 cut(s) | 54, 170, 467 |
| BbvI | GCAGC | 2 cut(s) | 363, 479 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 197, 231 |
| BciT130I | CCWGG | 1 cut(s) | 183 |
| BcnI | CCSGG | 1 cut(s) | 195 |
| BfaI | CTAG | 1 cut(s) | 683 |
| BfmI | CTRYAG | 1 cut(s) | 381 |
| BisI | GCNGC | 4 cut(s) | 377, 468, 493, 729 |
| BlsI | GCNGC | 4 cut(s) | 378, 469, 494, 730 |
| BmcAI | AGTACT | 1 cut(s) | 340 |
| Bme1390I | CCNGG | 2 cut(s) | 183, 195 |
| Bme18I | GGWCC | 1 cut(s) | 698 |
| BmgT120I | GGNCC | 2 cut(s) | 137, 698 |
| BmrFI | CCNGG | 2 cut(s) | 183, 195 |
| BmsI | GCATC | 1 cut(s) | 142 |
| BoxI | GACNNNNGTC | 1 cut(s) | 672 |
| BpiI | GAAGAC | 3 cut(s) | 54, 170, 467 |
| Bpu10I | CCTNAGC | 1 cut(s) | 391 |
| BpuMI | CCSGG | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 182 |
| Bse3DI | GCAATG | 1 cut(s) | 454 |
| BseBI | CCWGG | 1 cut(s) | 183 |
| BseDI | CCNNGG | 2 cut(s) | 27, 182 |
| BseMI | GCAATG | 1 cut(s) | 454 |
| BseMII | CTCAG | 2 cut(s) | 51, 462 |
| BseXI | GCAGC | 2 cut(s) | 363, 479 |
| Bsh1236I | CGCG | 1 cut(s) | 678 |
| Bsh1285I | CGRYCG | 1 cut(s) | 535 |
| BshFI | GGCC | 5 cut(s) | 138, 198, 206, 389, 728 |
| BsiEI | CGRYCG | 1 cut(s) | 535 |
| BsiSI | CCGG | 1 cut(s) | 195 |
| BslFI | GGGAC | 1 cut(s) | 680 |
| BsmFI | GGGAC | 1 cut(s) | 680 |
| BsnI | GGCC | 5 cut(s) | 138, 198, 206, 389, 728 |
| Bsp143I | GATC | 3 cut(s) | 271, 451, 607 |
| Bsp19I | CCATGG | 1 cut(s) | 27 |
| BspACI | CCGC | 4 cut(s) | 493, 535, 589, 729 |
| BspANI | GGCC | 5 cut(s) | 138, 198, 206, 389, 728 |
| BspCNI | CTCAG | 2 cut(s) | 50, 463 |
| BspFNI | CGCG | 1 cut(s) | 678 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspMAI | CTGCAG | 1 cut(s) | 385 |
| BsrDI | GCAATG | 1 cut(s) | 454 |
| BssECI | CCNNGG | 2 cut(s) | 27, 182 |
| BssMI | GATC | 3 cut(s) | 271, 451, 607 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 2 cut(s) | 415, 511 |
| BstC8I | GCNNGC | 2 cut(s) | 381, 593 |
| BstDEI | CTNAG | 3 cut(s) | 37, 391, 471 |
| BstDSI | CCRYGG | 1 cut(s) | 27 |
| BstFNI | CGCG | 1 cut(s) | 678 |
| BstHHI | GCGC | 1 cut(s) | 680 |
| BstKTI | GATC | 3 cut(s) | 274, 454, 610 |
| BstMBI | GATC | 3 cut(s) | 271, 451, 607 |
| BstMCI | CGRYCG | 1 cut(s) | 535 |
| BstNI | CCWGG | 1 cut(s) | 183 |
| BstNSI | RCATGY | 2 cut(s) | 595, 653 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 672 |
| BstSCI | CCNGG | 2 cut(s) | 181, 193 |
| BstSFI | CTRYAG | 1 cut(s) | 381 |
| BstUI | CGCG | 1 cut(s) | 678 |
| BstV1I | GCAGC | 2 cut(s) | 363, 479 |
| BstV2I | GAAGAC | 3 cut(s) | 54, 170, 467 |
| BsuRI | GGCC | 5 cut(s) | 138, 198, 206, 389, 728 |
| BtgI | CCRYGG | 1 cut(s) | 27 |
| BtsIMutI | CAGTG | 1 cut(s) | 516 |
| Cac8I | GCNNGC | 2 cut(s) | 381, 593 |
| CaiI | CAGNNNCTG | 1 cut(s) | 470 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 680 |
| Cfr13I | GGNCC | 2 cut(s) | 137, 698 |
| CseI | GACGC | 2 cut(s) | 242, 701 |
| Csp6I | GTAC | 3 cut(s) | 68, 281, 339 |
| CviAII | CATG | 5 cut(s) | 28, 169, 275, 592, 650 |
| CviQI | GTAC | 3 cut(s) | 68, 281, 339 |
| DdeI | CTNAG | 3 cut(s) | 37, 391, 471 |
| DpnI | GATC | 3 cut(s) | 273, 453, 609 |
| DpnII | GATC | 3 cut(s) | 271, 451, 607 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco147I | AGGCCT | 1 cut(s) | 389 |
| Eco47I | GGWCC | 1 cut(s) | 698 |
| Eco57I | CTGAAG | 1 cut(s) | 221 |
| EcoO109I | RGGNCCY | 1 cut(s) | 137 |
| EcoRI | GAATTC | 1 cut(s) | 32 |
| EcoRII | CCWGG | 1 cut(s) | 181 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| FaeI | CATG | 5 cut(s) | 31, 172, 278, 595, 653 |
| FaqI | GGGAC | 1 cut(s) | 680 |
| FatI | CATG | 5 cut(s) | 27, 168, 274, 591, 649 |
| Fnu4HI | GCNGC | 4 cut(s) | 377, 468, 493, 729 |
| Fsp4HI | GCNGC | 4 cut(s) | 377, 468, 493, 729 |
| FspBI | CTAG | 1 cut(s) | 683 |
| GlaI | GCGC | 1 cut(s) | 679 |
| GluI | GCNGC | 4 cut(s) | 377, 468, 493, 729 |
| HaeIII | GGCC | 5 cut(s) | 138, 198, 206, 389, 728 |
| HapII | CCGG | 1 cut(s) | 195 |
| HgaI | GACGC | 2 cut(s) | 242, 701 |
| HhaI | GCGC | 1 cut(s) | 680 |
| Hin1II | CATG | 5 cut(s) | 31, 172, 278, 595, 653 |
| Hin6I | GCGC | 1 cut(s) | 678 |
| HinP1I | GCGC | 1 cut(s) | 678 |
| HincII | GTYRAC | 2 cut(s) | 420, 517 |
| HindII | GTYRAC | 2 cut(s) | 420, 517 |
| HindIII | AAGCTT | 1 cut(s) | 54 |
| HinfI | GANTC | 2 cut(s) | 94, 248 |
| HpaII | CCGG | 1 cut(s) | 195 |
| HphI | GGTGA | 2 cut(s) | 236, 730 |
| Hpy166II | GTNNAC | 2 cut(s) | 420, 517 |
| Hpy188I | TCNGA | 1 cut(s) | 40 |
| Hpy188III | TCNNGA | 6 cut(s) | 149, 275, 455, 559, 584, 683 |
| Hpy8I | GTNNAC | 2 cut(s) | 420, 517 |
| Hpy99I | CGWCG | 1 cut(s) | 236 |
| HpyAV | CCTTC | 3 cut(s) | 196, 372, 406 |
| HpyCH4III | ACNGT | 2 cut(s) | 415, 511 |
| HpyCH4V | TGCA | 3 cut(s) | 383, 485, 595 |
| HpyF3I | CTNAG | 3 cut(s) | 37, 391, 471 |
| Hsp92II | CATG | 5 cut(s) | 31, 172, 278, 595, 653 |
| HspAI | GCGC | 1 cut(s) | 678 |
| Kzo9I | GATC | 3 cut(s) | 271, 451, 607 |
| LmnI | GCTCC | 1 cut(s) | 709 |
| LpnPI | CCDG | 9 cut(s) | 93, 162, 168, 195, 208, 212, 279, 393, 597 |
| Lsp1109I | GCAGC | 2 cut(s) | 363, 479 |
| LweI | GCATC | 1 cut(s) | 142 |
| MaeI | CTAG | 1 cut(s) | 683 |
| MaeIII | GTNAC | 2 cut(s) | 478, 619 |
| MalI | GATC | 3 cut(s) | 273, 453, 609 |
| MboI | GATC | 3 cut(s) | 271, 451, 607 |
| MboII | GAAGA | 7 cut(s) | 29, 32, 54, 170, 472, 617, 711 |
| MluCI | AATT | 6 cut(s) | 32, 101, 240, 554, 600, 636 |
| MmeI | TCCRAC | 1 cut(s) | 189 |
| MnlI | CCTC | 7 cut(s) | 77, 150, 220, 271, 289, 379, 510 |
| MroXI | GAANNNNTTC | 1 cut(s) | 252 |
| MseI | TTAA | 3 cut(s) | 239, 302, 345 |
| MspA1I | CMGCKG | 1 cut(s) | 470 |
| MspI | CCGG | 1 cut(s) | 195 |
| MspR9I | CCNGG | 2 cut(s) | 183, 195 |
| MvaI | CCWGG | 1 cut(s) | 183 |
| MvnI | CGCG | 1 cut(s) | 678 |
| NciI | CCSGG | 1 cut(s) | 195 |
| NcoI | CCATGG | 1 cut(s) | 27 |
| NdeII | GATC | 3 cut(s) | 271, 451, 607 |
| NlaIII | CATG | 5 cut(s) | 31, 172, 278, 595, 653 |
| NspI | RCATGY | 2 cut(s) | 595, 653 |
| PaeI | GCATGC | 1 cut(s) | 595 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PceI | AGGCCT | 1 cut(s) | 389 |
| PdmI | GAANNNNTTC | 1 cut(s) | 252 |
| PfeI | GAWTC | 2 cut(s) | 94, 248 |
| PkrI | GCNGC | 4 cut(s) | 378, 469, 494, 730 |
| PshAI | GACNNNNGTC | 1 cut(s) | 672 |
| Psp6I | CCWGG | 1 cut(s) | 181 |
| PspGI | CCWGG | 1 cut(s) | 181 |
| PspPI | GGNCC | 2 cut(s) | 137, 698 |
| PstI | CTGCAG | 1 cut(s) | 385 |
| PstNI | CAGNNNCTG | 1 cut(s) | 470 |
| PvuII | CAGCTG | 1 cut(s) | 470 |
| RsaI | GTAC | 3 cut(s) | 69, 282, 340 |
| RsaNI | GTAC | 3 cut(s) | 68, 281, 339 |
| SaqAI | TTAA | 3 cut(s) | 239, 302, 345 |
| SatI | GCNGC | 4 cut(s) | 377, 468, 493, 729 |
| Sau3AI | GATC | 3 cut(s) | 271, 451, 607 |
| Sau96I | GGNCC | 2 cut(s) | 137, 698 |
| ScaI | AGTACT | 1 cut(s) | 340 |
| ScrFI | CCNGG | 2 cut(s) | 183, 195 |
| SetI | ASST | 9 cut(s) | 58, 88, 282, 373, 411, 472, 502, 703, 743 |
| SfaNI | GCATC | 1 cut(s) | 142 |
| SfcI | CTRYAG | 1 cut(s) | 381 |
| SinI | GGWCC | 1 cut(s) | 698 |
| SphI | GCATGC | 1 cut(s) | 595 |
| Sse9I | AATT | 6 cut(s) | 32, 101, 240, 554, 600, 636 |
| SseBI | AGGCCT | 1 cut(s) | 389 |
| SsiI | CCGC | 4 cut(s) | 493, 535, 589, 729 |
| SspMI | CTAG | 1 cut(s) | 683 |
| StuI | AGGCCT | 1 cut(s) | 389 |
| StyD4I | CCNGG | 2 cut(s) | 181, 193 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaaI | ACNGT | 2 cut(s) | 415, 511 |
| TaqII | GACCGA | 1 cut(s) | 556 |
| TasI | AATT | 6 cut(s) | 32, 101, 240, 554, 600, 636 |
| TatI | WGTACW | 2 cut(s) | 67, 338 |
| TauI | GCSGC | 2 cut(s) | 495, 731 |
| TfiI | GAWTC | 2 cut(s) | 94, 248 |
| Tru1I | TTAA | 3 cut(s) | 239, 302, 345 |
| Tru9I | TTAA | 3 cut(s) | 239, 302, 345 |
| TscAI | CASTG | 1 cut(s) | 516 |
| TseI | GCWGC | 2 cut(s) | 376, 467 |
| TspDTI | ATGAA | 1 cut(s) | 245 |
| TspRI | CASTG | 1 cut(s) | 516 |
| VpaK11BI | GGWCC | 1 cut(s) | 698 |
| XapI | RAATTY | 2 cut(s) | 32, 554 |
| XbaI | TCTAGA | 1 cut(s) | 682 |
| XceI | RCATGY | 2 cut(s) | 595, 653 |
| XmnI | GAANNNNTTC | 1 cut(s) | 252 |
| XspI | CTAG | 1 cut(s) | 683 |
| ZrmI | AGTACT | 1 cut(s) | 340 |