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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 383 |
| Acc36I | ACCTGC | 1 cut(s) | 383 |
| AccII | CGCG | 1 cut(s) | 445 |
| AcoI | YGGCCR | 1 cut(s) | 160 |
| AcuI | CTGAAG | 1 cut(s) | 351 |
| AfaI | GTAC | 3 cut(s) | 67, 388, 426 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 296, 323 |
| AgsI | TTSAA | 2 cut(s) | 24, 122 |
| AluBI | AGCT | 5 cut(s) | 195, 256, 260, 347, 412 |
| AluI | AGCT | 5 cut(s) | 195, 256, 260, 347, 412 |
| Alw21I | GWGCWC | 2 cut(s) | 197, 361 |
| AoxI | GGCC | 1 cut(s) | 160 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 241 |
| AspS9I | GGNCC | 1 cut(s) | 382 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 407 |
| AsuNHI | GCTAGC | 1 cut(s) | 256 |
| AvaII | GGWCC | 1 cut(s) | 382 |
| BanII | GRGCYC | 2 cut(s) | 197, 451 |
| Bbv12I | GWGCWC | 2 cut(s) | 197, 361 |
| BccI | CCATC | 2 cut(s) | 68, 370 |
| BceAI | ACGGC | 3 cut(s) | 103, 147, 405 |
| BclI | TGATCA | 1 cut(s) | 169 |
| BfaI | CTAG | 1 cut(s) | 257 |
| BfuAI | ACCTGC | 1 cut(s) | 383 |
| Bme18I | GGWCC | 1 cut(s) | 382 |
| BmgT120I | GGNCC | 1 cut(s) | 382 |
| BmtI | GCTAGC | 1 cut(s) | 260 |
| BsaJI | CCNNGG | 2 cut(s) | 198, 249 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 298, 328 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 296, 323 |
| Bse1I | ACTGG | 1 cut(s) | 73 |
| BseDI | CCNNGG | 2 cut(s) | 198, 249 |
| BseGI | GGATG | 3 cut(s) | 10, 61, 267 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 296, 323 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseNI | ACTGG | 1 cut(s) | 73 |
| BseRI | GAGGAG | 2 cut(s) | 174, 303 |
| Bsh1236I | CGCG | 1 cut(s) | 445 |
| BshFI | GGCC | 1 cut(s) | 162 |
| BsiHKAI | GWGCWC | 2 cut(s) | 197, 361 |
| BsiSI | CCGG | 1 cut(s) | 225 |
| BsiWI | CGTACG | 1 cut(s) | 386 |
| BslFI | GGGAC | 1 cut(s) | 316 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 296, 323 |
| BsmFI | GGGAC | 1 cut(s) | 316 |
| BsmI | GAATGC | 1 cut(s) | 22 |
| BsnI | GGCC | 1 cut(s) | 162 |
| Bsp1286I | GDGCHC | 3 cut(s) | 197, 361, 451 |
| Bsp143I | GATC | 2 cut(s) | 169, 397 |
| Bsp19I | CCATGG | 1 cut(s) | 198 |
| Bsp68I | TCGCGA | 1 cut(s) | 445 |
| BspANI | GGCC | 1 cut(s) | 162 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspFNI | CGCG | 1 cut(s) | 445 |
| BspMI | ACCTGC | 1 cut(s) | 383 |
| BspOI | GCTAGC | 1 cut(s) | 260 |
| BspQI | GCTCTTC | 1 cut(s) | 267 |
| BsrI | ACTGG | 1 cut(s) | 73 |
| BssECI | CCNNGG | 2 cut(s) | 198, 249 |
| BssMI | GATC | 2 cut(s) | 169, 397 |
| BssT1I | CCWWGG | 2 cut(s) | 198, 249 |
| Bst4CI | ACNGT | 2 cut(s) | 338, 386 |
| Bst6I | CTCTTC | 1 cut(s) | 267 |
| BstC8I | GCNNGC | 3 cut(s) | 258, 345, 447 |
| BstDEI | CTNAG | 2 cut(s) | 133, 189 |
| BstDSI | CCRYGG | 1 cut(s) | 198 |
| BstF5I | GGATG | 3 cut(s) | 10, 61, 267 |
| BstFNI | CGCG | 1 cut(s) | 445 |
| BstKTI | GATC | 2 cut(s) | 172, 400 |
| BstMBI | GATC | 2 cut(s) | 169, 397 |
| BstUI | CGCG | 1 cut(s) | 445 |
| BsuRI | GGCC | 1 cut(s) | 162 |
| BtgI | CCRYGG | 1 cut(s) | 198 |
| BtgZI | GCGATG | 1 cut(s) | 426 |
| BtsCI | GGATG | 3 cut(s) | 10, 61, 267 |
| BtsIMutI | CAGTG | 1 cut(s) | 343 |
| BtuMI | TCGCGA | 1 cut(s) | 445 |
| BveI | ACCTGC | 1 cut(s) | 383 |
| Cac8I | GCNNGC | 3 cut(s) | 258, 345, 447 |
| Cfr13I | GGNCC | 1 cut(s) | 382 |
| Csp6I | GTAC | 3 cut(s) | 66, 387, 425 |
| CviAII | CATG | 2 cut(s) | 91, 199 |
| CviQI | GTAC | 3 cut(s) | 66, 387, 425 |
| DdeI | CTNAG | 2 cut(s) | 133, 189 |
| DpnI | GATC | 2 cut(s) | 171, 399 |
| DpnII | GATC | 2 cut(s) | 169, 397 |
| EaeI | YGGCCR | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 1 cut(s) | 267 |
| EarI | CTCTTC | 1 cut(s) | 267 |
| Ecl136II | GAGCTC | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 2 cut(s) | 198, 249 |
| Eco24I | GRGCYC | 2 cut(s) | 197, 451 |
| Eco47I | GGWCC | 1 cut(s) | 382 |
| Eco53kI | GAGCTC | 1 cut(s) | 195 |
| Eco57I | CTGAAG | 1 cut(s) | 351 |
| EcoICRI | GAGCTC | 1 cut(s) | 195 |
| EcoT14I | CCWWGG | 2 cut(s) | 198, 249 |
| EcoT38I | GRGCYC | 2 cut(s) | 197, 451 |
| ErhI | CCWWGG | 2 cut(s) | 198, 249 |
| FaeI | CATG | 2 cut(s) | 94, 202 |
| FaiI | YATR | 9 cut(s) | 92, 150, 200, 215, 276, 293, 302, 429, 434 |
| FaqI | GGGAC | 1 cut(s) | 316 |
| FatI | CATG | 2 cut(s) | 90, 198 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| FokI | GGATG | 3 cut(s) | 17, 68, 254 |
| FriOI | GRGCYC | 2 cut(s) | 197, 451 |
| FspBI | CTAG | 1 cut(s) | 257 |
| HaeIII | GGCC | 1 cut(s) | 162 |
| HapII | CCGG | 1 cut(s) | 225 |
| Hin1II | CATG | 2 cut(s) | 94, 202 |
| HpaII | CCGG | 1 cut(s) | 225 |
| HphI | GGTGA | 2 cut(s) | 83, 407 |
| Hpy166II | GTNNAC | 1 cut(s) | 382 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 2 cut(s) | 188, 444 |
| Hpy8I | GTNNAC | 1 cut(s) | 382 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 1 cut(s) | 317 |
| HpyCH4III | ACNGT | 2 cut(s) | 338, 386 |
| HpyCH4IV | ACGT | 1 cut(s) | 219 |
| HpyF3I | CTNAG | 2 cut(s) | 133, 189 |
| HpySE526I | ACGT | 1 cut(s) | 219 |
| Hsp92II | CATG | 2 cut(s) | 94, 202 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| Kzo9I | GATC | 2 cut(s) | 169, 397 |
| LguI | GCTCTTC | 1 cut(s) | 267 |
| LmnI | GCTCC | 3 cut(s) | 200, 253, 364 |
| LpnPI | CCDG | 6 cut(s) | 26, 48, 54, 201, 238, 378 |
| MaeI | CTAG | 1 cut(s) | 257 |
| MaeII | ACGT | 1 cut(s) | 219 |
| MalI | GATC | 2 cut(s) | 171, 399 |
| MboI | GATC | 2 cut(s) | 169, 397 |
| MboII | GAAGA | 3 cut(s) | 134, 254, 357 |
| MhlI | GDGCHC | 3 cut(s) | 197, 361, 451 |
| MmeI | TCCRAC | 1 cut(s) | 341 |
| MnlI | CCTC | 5 cut(s) | 46, 192, 195, 297, 324 |
| MroXI | GAANNNNTTC | 1 cut(s) | 241 |
| MspI | CCGG | 1 cut(s) | 225 |
| Mva1269I | GAATGC | 1 cut(s) | 22 |
| MvnI | CGCG | 1 cut(s) | 445 |
| NcoI | CCATGG | 1 cut(s) | 198 |
| NdeII | GATC | 2 cut(s) | 169, 397 |
| NheI | GCTAGC | 1 cut(s) | 256 |
| NlaIII | CATG | 2 cut(s) | 94, 202 |
| NruI | TCGCGA | 1 cut(s) | 445 |
| PaqCI | CACCTGC | 1 cut(s) | 383 |
| PciSI | GCTCTTC | 1 cut(s) | 267 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 449 |
| PctI | GAATGC | 1 cut(s) | 22 |
| PdmI | GAANNNNTTC | 1 cut(s) | 241 |
| Pfl23II | CGTACG | 1 cut(s) | 386 |
| Psp124BI | GAGCTC | 1 cut(s) | 197 |
| PspLI | CGTACG | 1 cut(s) | 386 |
| PspPI | GGNCC | 1 cut(s) | 382 |
| RruI | TCGCGA | 1 cut(s) | 445 |
| RsaI | GTAC | 3 cut(s) | 67, 388, 426 |
| RsaNI | GTAC | 3 cut(s) | 66, 387, 425 |
| SacI | GAGCTC | 1 cut(s) | 197 |
| SapI | GCTCTTC | 1 cut(s) | 267 |
| Sau3AI | GATC | 2 cut(s) | 169, 397 |
| Sau96I | GGNCC | 1 cut(s) | 382 |
| SduI | GDGCHC | 3 cut(s) | 197, 361, 451 |
| SetI | ASST | 8 cut(s) | 197, 222, 251, 258, 262, 349, 397, 414 |
| SinI | GGWCC | 1 cut(s) | 382 |
| SspMI | CTAG | 1 cut(s) | 257 |
| SstI | GAGCTC | 1 cut(s) | 197 |
| StyI | CCWWGG | 2 cut(s) | 198, 249 |
| TaaI | ACNGT | 2 cut(s) | 338, 386 |
| TaiI | ACGT | 1 cut(s) | 222 |
| TaqI | TCGA | 2 cut(s) | 235, 245 |
| TscAI | CASTG | 1 cut(s) | 343 |
| TspDTI | ATGAA | 2 cut(s) | 291, 407 |
| TspRI | CASTG | 1 cut(s) | 343 |
| VpaK11BI | GGWCC | 1 cut(s) | 382 |
| XmnI | GAANNNNTTC | 1 cut(s) | 241 |
| XspI | CTAG | 1 cut(s) | 257 |