Rmu_sc0000148.1_g000041

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000148.1
OG0000063
Physical Location & Seq
Reverse (-)
200664 .. 203362
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000148.1_g000041.1.cds

Sequence Viewer

Length: 2214 bp
atgggaagcctttttgaagaagaagccatggaattctcagaaaaatatgacaaagctttgtcttctgtatttgaaaaaatgcgaagtggagagattcacaaattagcggggcaaattccaccaaccctttacttaggtcctcactttcctgatggtactcctccaatcatcacaagagtcctttacaaatatcaatcagatcactctaggcactttgtccaacatgattggtcttcctgggcttgttcccggcctgaaggttggccgaccctcacggaagaatggaaagcatgggtgccaagaatggagtttttctatgctgacgcttggcggaaacttggcatttatgatgctattaagctcacggagcaagacatagtcattgagaagcccatactagcagcggctttatgtttttgtgcgaatcacaatttgtcaactgcttttagagatagccttcaagctccaaaattcaaggataaagatgcacaagctcaagctacgaataagtccaaaaggtcacgcaactatagcaccttgtacaagcactatgctttgttaggtagagaaccagtcaaggagaacgagcatgcagcgtttctatattattggctatgcaagtatgtgttctgctgcaaagctcgacaatgtcctcttgattttgcaatactagccgaggcattagcttcgggcatccagttagctcttggcccatttgtccttgcatacttgtacaggtgtctgcataaaattgtgactaatgacatggatcccaacactggtggaccactctggatgttccaactctggttgcgggcctattttcctcaaatgtcaacagccgcacctgaatttgactataagatgtcatatgggcggcatcttatggctacagtatcatcttatatgtcagtggagaagtgttttaccatgttctacaccctcaaacactttaaaaactttcatgtttgctacaccaaatggaaggtagccttttttgcagacaacgaagaatcagatcagtacttgtccgatgatgaatggaaaggaacctggggtagtttcctaatctcaagagatttgcactacggcctaacacttagccgttattctaggcccggggtagaagtctatcttcccaattattttgctcgtcagtttggattccttcagagttgtcctgttcttttaaacaactcattgaatcatctatgttcaaggcgccaaaagctcaggacgcaggatatgtgtgactcagtctcacgacgttaccaagaacgtctcagccttttcaagatggagccttaccaaacgagttgtacggctacaccccctttcgttaattggtggtcagattactcaaagaaattcgttgacccagatttaaaggaactgttcacacagcggattgtccaaggagttggtgatatcttgaagagccaagatgggaggaaaagaatgcgaactacgactgatggtcgcaaagaaactccaaccttagcacaacagagttcatctttttctgaagaatattctcttgcgggctcggataacaatagcggccatactattgaattaactattgatgatgagcaggctgaaactttcgctaatggtgaggaccacgctttaattgatgaatcagttcattctttccctgacgatcgtgaggcaacctcttctagacctttgttgtctgcagaggccttagccttcttggacgagcttgctatgccaacaaagatgacaccaatacagattggcaatgatcgggagaagacagcggccgagtttgtaactgcatgttgccgcaaaccccttttgaccgtggttgacaacaatctttatgaccgcttcaaacaagaaacaaaattcttgatttcggtcaatcattttagtcccgaccgcatgcaacaaattgaagatcatctcaaagttacagatggccgcgaacttacccaactccatgatgagttcaacaaagatgcacaagagttagctgagctagagagtcgagtgaatgtgatccgggagcgcatgtccatggcttcaaacgttataaaccaagagtataaagaacatcatgaagagctcaagttgttttccatacatggtagggacacccaagcctttttagaaatcaagcatgatcttgatgaagcaatgaagaaaaatgacgttgactgggctacatgggagaggatcttgccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

737

Amino Acids

85.5

Weight (kDa)

5.93

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2060
AccB1I GGYRCC 2 cut(s) 295, 1221
AccII CGCG 1 cut(s) 1950
AclI AACGTT 1 cut(s) 2055
AclWI GGATC 4 cut(s) 764, 777, 2020, 2210
AcoI YGGCCR 4 cut(s) 263, 1561, 1785, 1945
AcsI RAATTY 6 cut(s) 32, 114, 470, 851, 1367, 1871
AcuI CTGAAG 3 cut(s) 276, 1154, 1545
AcyI GRCGYC 1 cut(s) 1222
AfaI GTAC 5 cut(s) 157, 542, 734, 1025, 1321
AfiI CCNNNNNNNGG 1 cut(s) 779
AhdI GACNNNNNGTC 1 cut(s) 1476
AjnI CCWGG 2 cut(s) 236, 1052
Alw21I GWGCWC 1 cut(s) 2094
Alw26I GTCTC 2 cut(s) 1264, 1286
AlwI GGATC 4 cut(s) 764, 777, 2020, 2210
Ama87I CYCGRG 1 cut(s) 1118
ApeKI GCWGC 3 cut(s) 401, 593, 633
ApoI RAATTY 6 cut(s) 32, 114, 470, 851, 1367, 1871
Asp700I GAANNNNTTC 1 cut(s) 1644
AspLEI GCGC 2 cut(s) 1224, 2037
AspS9I GGNCC 6 cut(s) 137, 710, 785, 816, 1116, 1621
AsuC2I CCSGG 4 cut(s) 250, 1119, 1120, 2030
AsuHPI GGTGA 2 cut(s) 1436, 1628
AvaI CYCGRG 1 cut(s) 1118
AvaII GGWCC 3 cut(s) 137, 785, 1621
BamHI GGATCC 1 cut(s) 769
BanI GGYRCC 2 cut(s) 295, 1221
BanII GRGCYC 2 cut(s) 1547, 2094
BbsI GAAGAC 3 cut(s) 54, 225, 1784
Bbv12I GWGCWC 1 cut(s) 2094
BbvI GCAGC 3 cut(s) 413, 605, 620
BccI CCATC 5 cut(s) 146, 1291, 1439, 1469, 1937
BceAI ACGGC 3 cut(s) 1089, 1105, 1338
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 2 cut(s) 238, 1054
BcnI CCSGG 4 cut(s) 250, 1119, 1120, 2030
BcoDI GTCTC 2 cut(s) 1264, 1286
BfaI CTAG 6 cut(s) 207, 398, 671, 1113, 1683, 2006
BfmI CTRYAG 3 cut(s) 529, 891, 1698
BfoI RGCGCY 1 cut(s) 1225
BlpI GCTNAGC 1 cut(s) 2001
BmcAI AGTACT 1 cut(s) 1025
Bme1390I CCNGG 6 cut(s) 238, 250, 1054, 1119, 1120, 2030
Bme18I GGWCC 3 cut(s) 137, 785, 1621
BmeRI GACNNNNNGTC 1 cut(s) 1476
BmeT110I CYCGRG 1 cut(s) 1118
BmgT120I GGNCC 6 cut(s) 137, 710, 785, 816, 1116, 1621
BmiI GGNNCC 5 cut(s) 297, 771, 1051, 1223, 1302
BmrFI CCNGG 6 cut(s) 238, 250, 1054, 1119, 1120, 2030
BmrI ACTGGG 1 cut(s) 2194
BmsI GCATC 5 cut(s) 340, 475, 702, 889, 1975
BmuI ACTGGG 1 cut(s) 2194
BpiI GAAGAC 3 cut(s) 54, 225, 1784
BplI GAGNNNNNCTC 2 cut(s) 1661, 1693
Bpu10I CCTNAGC 3 cut(s) 1232, 1498, 1708
Bpu1102I GCTNAGC 1 cut(s) 2001
BpuEI CTTGAG 3 cut(s) 480, 1057, 2078
BpuMI CCSGG 4 cut(s) 250, 1119, 1120, 2030
BsaHI GRCGYC 1 cut(s) 1222
BsaJI CCNNGG 9 cut(s) 27, 237, 675, 1053, 1118, 1119, 1414, 1827, 2043
BsaXI ACNNNNNCTCC 2 cut(s) 2024, 2054
Bsc4I CCNNNNNNNGG 1 cut(s) 779
Bse1I ACTGG 4 cut(s) 572, 697, 784, 2189
Bse3DI GCAATG 2 cut(s) 1771, 2169
BseBI CCWGG 2 cut(s) 238, 1054
BseDI CCNNGG 9 cut(s) 27, 237, 675, 1053, 1118, 1119, 1414, 1827, 2043
BseGI GGATG 2 cut(s) 693, 801
BseLI CCNNNNNNNGG 1 cut(s) 779
BseMI GCAATG 2 cut(s) 1771, 2169
BseMII CTCAG 5 cut(s) 51, 1246, 1269, 1297, 1992
BseNI ACTGG 4 cut(s) 572, 697, 784, 2189
BseRI GAGGAG 1 cut(s) 150
BseX3I CGGCCG 1 cut(s) 1785
BseXI GCAGC 3 cut(s) 413, 605, 620
Bsh1236I CGCG 1 cut(s) 1950
Bsh1285I CGRYCG 3 cut(s) 1666, 1788, 1906
BshNI GGYRCC 2 cut(s) 295, 1221
BsiEI CGRYCG 3 cut(s) 1666, 1788, 1906
BsiHKAI GWGCWC 1 cut(s) 2094
BsiHKCI CYCGRG 1 cut(s) 1118
BsiSI CCGG 3 cut(s) 250, 1119, 2029
BslFI GGGAC 2 cut(s) 1884, 2132
BslI CCNNNNNNNGG 1 cut(s) 779
BsmAI GTCTC 2 cut(s) 1264, 1286
BsmBI CGTCTC 1 cut(s) 1286
BsmFI GGGAC 2 cut(s) 1884, 2132
BsmI GAATGC 1 cut(s) 1464
BsoBI CYCGRG 1 cut(s) 1118
Bsp1286I GDGCHC 2 cut(s) 1547, 2094
Bsp1407I TGTACA 2 cut(s) 540, 732
Bsp143I GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
Bsp1720I GCTNAGC 1 cut(s) 2001
Bsp19I CCATGG 2 cut(s) 27, 2043
BspCNI CTCAG 5 cut(s) 50, 1245, 1268, 1296, 1993
BspFNI CGCG 1 cut(s) 1950
BspHI TCATGA 1 cut(s) 2083
BspLI GGNNCC 5 cut(s) 297, 771, 1051, 1223, 1302
BspMAI CTGCAG 1 cut(s) 1702
BspPI GGATC 4 cut(s) 764, 777, 2020, 2210
BspQI GCTCTTC 2 cut(s) 1430, 2082
BspT107I GGYRCC 2 cut(s) 295, 1221
BsrDI GCAATG 2 cut(s) 1771, 2169
BsrGI TGTACA 2 cut(s) 540, 732
BsrI ACTGG 4 cut(s) 572, 697, 784, 2189
BssECI CCNNGG 9 cut(s) 27, 237, 675, 1053, 1118, 1119, 1414, 1827, 2043
BssMI GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
BssNI GRCGYC 1 cut(s) 1222
BssT1I CCWWGG 3 cut(s) 27, 1414, 2043
Bst2UI CCWGG 2 cut(s) 238, 1054
Bst4CI ACNGT 3 cut(s) 895, 1395, 1828
Bst6I CTCTTC 3 cut(s) 1430, 1684, 2082
BstACI GRCGYC 1 cut(s) 1222
BstAUI TGTACA 2 cut(s) 540, 732
BstC8I GCNNGC 6 cut(s) 591, 816, 1543, 1596, 1728, 1910
BstDEI CTNAG 9 cut(s) 37, 133, 1100, 1232, 1255, 1283, 1498, 1708, 2001
BstDSI CCRYGG 3 cut(s) 27, 1827, 2043
BstF5I GGATG 2 cut(s) 693, 801
BstFNI CGCG 1 cut(s) 1950
BstH2I RGCGCY 1 cut(s) 1225
BstHHI GCGC 2 cut(s) 1224, 2037
BstKTI GATC 9 cut(s) 202, 772, 1021, 1666, 1771, 1927, 2028, 2152, 2205
BstMAI GTCTC 2 cut(s) 1264, 1286
BstMBI GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
BstMCI CGRYCG 3 cut(s) 1666, 1788, 1906
BstMWI GCNNNNNNNGC 7 cut(s) 367, 531, 671, 998, 1228, 1237, 1732
BstNI CCWGG 2 cut(s) 238, 1054
BstNSI RCATGY 4 cut(s) 593, 1806, 1912, 2041
BstSCI CCNGG 6 cut(s) 236, 248, 1052, 1117, 1118, 2028
BstSFI CTRYAG 3 cut(s) 529, 891, 1698
BstUI CGCG 1 cut(s) 1950
BstV1I GCAGC 3 cut(s) 413, 605, 620
BstV2I GAAGAC 3 cut(s) 54, 225, 1784
BstX2I RGATCY 2 cut(s) 769, 2202
BstXI CCANNNNNNTGG 1 cut(s) 1421
BstYI RGATCY 2 cut(s) 769, 2202
BstZI CGGCCG 1 cut(s) 1785
BtgI CCRYGG 3 cut(s) 27, 1827, 2043
BtsCI GGATG 2 cut(s) 693, 801
BtsIMutI CAGTG 2 cut(s) 777, 918
Cac8I GCNNGC 6 cut(s) 591, 816, 1543, 1596, 1728, 1910
CciI TCATGA 1 cut(s) 2083
CfoI GCGC 2 cut(s) 1224, 2037
Cfr13I GGNCC 6 cut(s) 137, 710, 785, 816, 1116, 1621
Cfr9I CCCGGG 1 cut(s) 1118
CseI GACGC 2 cut(s) 332, 1246
Csp6I GTAC 5 cut(s) 156, 541, 733, 1024, 1320
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviQI GTAC 5 cut(s) 156, 541, 733, 1024, 1320
DdeI CTNAG 9 cut(s) 37, 133, 1100, 1232, 1255, 1283, 1498, 1708, 2001
DinI GGCGCC 1 cut(s) 1223
DpnI GATC 9 cut(s) 201, 771, 1020, 1665, 1770, 1926, 2027, 2151, 2204
DpnII GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
DraI TTTAAA 3 cut(s) 955, 1191, 1386
DriI GACNNNNNGTC 1 cut(s) 1476
EaeI YGGCCR 4 cut(s) 263, 1561, 1785, 1945
EagI CGGCCG 1 cut(s) 1785
Eam1104I CTCTTC 3 cut(s) 1430, 1684, 2082
Eam1105I GACNNNNNGTC 1 cut(s) 1476
EarI CTCTTC 3 cut(s) 1430, 1684, 2082
EciI GGCGGA 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 2092
EclXI CGGCCG 1 cut(s) 1785
Eco130I CCWWGG 3 cut(s) 27, 1414, 2043
Eco147I AGGCCT 1 cut(s) 1706
Eco24I GRGCYC 2 cut(s) 1547, 2094
Eco32I GATATC 1 cut(s) 1429
Eco47I GGWCC 3 cut(s) 137, 785, 1621
Eco52I CGGCCG 1 cut(s) 1785
Eco53kI GAGCTC 1 cut(s) 2092
Eco57I CTGAAG 3 cut(s) 276, 1154, 1545
Eco88I CYCGRG 1 cut(s) 1118
EcoICRI GAGCTC 1 cut(s) 2092
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 236, 1052
EcoRV GATATC 1 cut(s) 1429
EcoT14I CCWWGG 3 cut(s) 27, 1414, 2043
EcoT38I GRGCYC 2 cut(s) 1547, 2094
EgeI GGCGCC 1 cut(s) 1223
EheI GGCGCC 1 cut(s) 1223
ErhI CCWWGG 3 cut(s) 27, 1414, 2043
Esp3I CGTCTC 1 cut(s) 1286
FalI AAGNNNNNCTT 4 cut(s) 977, 1009, 1119, 1151
FaqI GGGAC 2 cut(s) 1884, 2132
FauI CCCGC 3 cut(s) 100, 807, 1534
FauNDI CATATG 1 cut(s) 871
FokI GGATG 2 cut(s) 680, 808
FriOI GRGCYC 2 cut(s) 1547, 2094
FspBI CTAG 6 cut(s) 207, 398, 671, 1113, 1683, 2006
GlaI GCGC 2 cut(s) 1223, 2036
HaeII RGCGCY 1 cut(s) 1225
HapII CCGG 3 cut(s) 250, 1119, 2029
HgaI GACGC 2 cut(s) 332, 1246
HhaI GCGC 2 cut(s) 1224, 2037
Hin1I GRCGYC 1 cut(s) 1222
Hin6I GCGC 2 cut(s) 1222, 2035
HinP1I GCGC 2 cut(s) 1222, 2035
HincII GTYRAC 5 cut(s) 438, 837, 1375, 1834, 2182
HindII GTYRAC 5 cut(s) 438, 837, 1375, 1834, 2182
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 9 cut(s) 94, 177, 424, 1013, 1164, 1204, 1253, 1640, 2011
HpaII CCGG 3 cut(s) 250, 1119, 2029
HphI GGTGA 2 cut(s) 1436, 1628
Hpy166II GTNNAC 7 cut(s) 438, 785, 837, 1375, 1398, 1834, 2182
Hpy188I TCNGA 8 cut(s) 40, 199, 1018, 1033, 1173, 1354, 1525, 1549
Hpy8I GTNNAC 7 cut(s) 438, 785, 837, 1375, 1398, 1834, 2182
Hpy99I CGWCG 1 cut(s) 1269
HpyAV CCTTC 5 cut(s) 251, 467, 979, 1178, 1723
HpyCH4III ACNGT 3 cut(s) 895, 1395, 1828
HpyCH4IV ACGT 4 cut(s) 1267, 1279, 2055, 2178
HpyF10VI GCNNNNNNNGC 7 cut(s) 367, 531, 671, 998, 1228, 1237, 1732
HpyF3I CTNAG 9 cut(s) 37, 133, 1100, 1232, 1255, 1283, 1498, 1708, 2001
HpySE526I ACGT 4 cut(s) 1267, 1279, 2055, 2178
Hsp92I GRCGYC 1 cut(s) 1222
HspAI GCGC 2 cut(s) 1222, 2035
KasI GGCGCC 1 cut(s) 1221
Kzo9I GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
LguI GCTCTTC 2 cut(s) 1430, 2082
LmnI GCTCC 4 cut(s) 367, 469, 1300, 2032
Lsp1109I GCAGC 3 cut(s) 413, 605, 620
LweI GCATC 5 cut(s) 340, 475, 702, 889, 1975
MaeI CTAG 6 cut(s) 207, 398, 671, 1113, 1683, 2006
MaeII ACGT 4 cut(s) 1267, 1279, 2055, 2178
MaeIII GTNAC 6 cut(s) 519, 754, 1250, 1268, 1795, 1936
MalI GATC 9 cut(s) 201, 771, 1020, 1665, 1770, 1926, 2027, 2151, 2204
MboI GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
MflI RGATCY 2 cut(s) 769, 2202
MhlI GDGCHC 2 cut(s) 1547, 2094
Mly113I GGCGCC 1 cut(s) 1222
MlyI GAGTC 3 cut(s) 186, 1247, 2020
MmeI TCCRAC 3 cut(s) 244, 826, 1517
MroXI GAANNNNTTC 1 cut(s) 1644
MseI TTAA 7 cut(s) 357, 954, 1190, 1341, 1385, 1577, 1631
MslI CAYNNNNRTG 1 cut(s) 2042
MspA1I CMGCKG 3 cut(s) 404, 1405, 1784
MspI CCGG 3 cut(s) 250, 1119, 2029
MspR9I CCNGG 6 cut(s) 238, 250, 1054, 1119, 1120, 2030
Mva1269I GAATGC 1 cut(s) 1464
MvaI CCWGG 2 cut(s) 238, 1054
MvnI CGCG 1 cut(s) 1950
MwoI GCNNNNNNNGC 7 cut(s) 367, 531, 671, 998, 1228, 1237, 1732
NarI GGCGCC 1 cut(s) 1222
NciI CCSGG 4 cut(s) 250, 1119, 1120, 2030
NcoI CCATGG 2 cut(s) 27, 2043
NdeI CATATG 1 cut(s) 871
NdeII GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
NlaIV GGNNCC 5 cut(s) 297, 771, 1051, 1223, 1302
NmeAIII GCCGAG 2 cut(s) 700, 1813
NmuCI GTSAC 3 cut(s) 519, 754, 1250
NspI RCATGY 4 cut(s) 593, 1806, 1912, 2041
PaeI GCATGC 2 cut(s) 593, 1912
PagI TCATGA 1 cut(s) 2083
PceI AGGCCT 1 cut(s) 1706
PciSI GCTCTTC 2 cut(s) 1430, 2082
PctI GAATGC 1 cut(s) 1464
PdmI GAANNNNTTC 1 cut(s) 1644
PfeI GAWTC 6 cut(s) 94, 424, 1013, 1164, 1204, 1640
PflFI GACNNNGTC 3 cut(s) 377, 648, 1256
PfoI TCCNGGA 1 cut(s) 2028
Ple19I CGATCG 1 cut(s) 1666
PleI GAGTC 3 cut(s) 185, 1247, 2019
PluTI GGCGCC 1 cut(s) 1225
PpsI GAGTC 3 cut(s) 185, 1247, 2019
PpuMI RGGWCCY 1 cut(s) 137
PsiI TTATAA 1 cut(s) 2060
Psp124BI GAGCTC 1 cut(s) 2094
Psp1406I AACGTT 1 cut(s) 2055
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 236, 1052
PspGI CCWGG 2 cut(s) 236, 1052
PspN4I GGNNCC 5 cut(s) 297, 771, 1051, 1223, 1302
PspPI GGNCC 6 cut(s) 137, 710, 785, 816, 1116, 1621
PspPPI RGGWCCY 1 cut(s) 137
PstI CTGCAG 1 cut(s) 1702
PsuI RGATCY 2 cut(s) 769, 2202
PsyI GACNNNGTC 3 cut(s) 377, 648, 1256
PvuI CGATCG 1 cut(s) 1666
RsaI GTAC 5 cut(s) 157, 542, 734, 1025, 1321
RsaNI GTAC 5 cut(s) 156, 541, 733, 1024, 1320
RseI CAYNNNNRTG 1 cut(s) 2042
SacI GAGCTC 1 cut(s) 2094
SapI GCTCTTC 2 cut(s) 1430, 2082
SaqAI TTAA 7 cut(s) 357, 954, 1190, 1341, 1385, 1577, 1631
Sau3AI GATC 9 cut(s) 199, 769, 1018, 1663, 1768, 1924, 2025, 2149, 2202
Sau96I GGNCC 6 cut(s) 137, 710, 785, 816, 1116, 1621
ScaI AGTACT 1 cut(s) 1025
SchI GAGTC 3 cut(s) 186, 1247, 2020
ScrFI CCNGG 6 cut(s) 238, 250, 1054, 1119, 1120, 2030
SduI GDGCHC 2 cut(s) 1547, 2094
SfaNI GCATC 5 cut(s) 340, 475, 702, 889, 1975
SfcI CTRYAG 3 cut(s) 529, 891, 1698
SfoI GGCGCC 1 cut(s) 1223
SinI GGWCC 3 cut(s) 137, 785, 1621
SmaI CCCGGG 1 cut(s) 1120
SmiMI CAYNNNNRTG 1 cut(s) 2042
SmlI CTYRAG 3 cut(s) 495, 1072, 2093
SmoI CTYRAG 3 cut(s) 495, 1072, 2093
SphI GCATGC 2 cut(s) 593, 1912
SseBI AGGCCT 1 cut(s) 1706
SspDI GGCGCC 1 cut(s) 1221
SspI AATATT 1 cut(s) 1532
SspMI CTAG 6 cut(s) 207, 398, 671, 1113, 1683, 2006
SstI GAGCTC 1 cut(s) 2094
StuI AGGCCT 1 cut(s) 1706
StyD4I CCNGG 6 cut(s) 236, 248, 1052, 1117, 1118, 2028
StyI CCWWGG 3 cut(s) 27, 1414, 2043
TaaI ACNGT 3 cut(s) 895, 1395, 1828
TaiI ACGT 4 cut(s) 1270, 1282, 2058, 2181
TaqI TCGA 2 cut(s) 643, 2014
TaqII GACCGA 1 cut(s) 1873
TatI WGTACW 3 cut(s) 540, 732, 1023
TauI GCSGC 7 cut(s) 407, 845, 880, 1563, 1787, 1812, 1950
TfiI GAWTC 6 cut(s) 94, 424, 1013, 1164, 1204, 1640
Tru1I TTAA 7 cut(s) 357, 954, 1190, 1341, 1385, 1577, 1631
Tru9I TTAA 7 cut(s) 357, 954, 1190, 1341, 1385, 1577, 1631
TscAI CASTG 2 cut(s) 784, 918
TseFI GTSAC 3 cut(s) 519, 754, 1250
TseI GCWGC 3 cut(s) 401, 593, 633
Tsp45I GTSAC 3 cut(s) 519, 754, 1250
TspDTI ATGAA 8 cut(s) 953, 1053, 1503, 1637, 1653, 2100, 2172, 2180
TspGWI ACGGA 2 cut(s) 290, 380
TspMI CCCGGG 1 cut(s) 1118
TspRI CASTG 2 cut(s) 784, 918
Tth111I GACNNNGTC 3 cut(s) 377, 648, 1256
VpaK11BI GGWCC 3 cut(s) 137, 785, 1621
XapI RAATTY 6 cut(s) 32, 114, 470, 851, 1367, 1871
XbaI TCTAGA 1 cut(s) 1682
XceI RCATGY 4 cut(s) 593, 1806, 1912, 2041
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XmaI CCCGGG 1 cut(s) 1118
XmnI GAANNNNTTC 1 cut(s) 1644
XspI CTAG 6 cut(s) 207, 398, 671, 1113, 1683, 2006
ZrmI AGTACT 1 cut(s) 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.