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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 630 |
| AciI | CCGC | 3 cut(s) | 65, 242, 525 |
| AclWI | GGATC | 1 cut(s) | 63 |
| AcoI | YGGCCR | 4 cut(s) | 42, 418, 489, 522 |
| AcsI | RAATTY | 1 cut(s) | 319 |
| AcuI | CTGAAG | 1 cut(s) | 147 |
| AfaI | GTAC | 2 cut(s) | 252, 389 |
| AgsI | TTSAA | 8 cut(s) | 92, 143, 235, 248, 362, 379, 436, 619 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 428, 460 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 526, 558 |
| AluBI | AGCT | 5 cut(s) | 20, 49, 497, 570, 668 |
| AluI | AGCT | 5 cut(s) | 20, 49, 497, 570, 668 |
| Alw26I | GTCTC | 2 cut(s) | 164, 332 |
| AlwI | GGATC | 1 cut(s) | 63 |
| AoxI | GGCC | 4 cut(s) | 42, 418, 489, 522 |
| ApoI | RAATTY | 1 cut(s) | 319 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 669 |
| AspLEI | GCGC | 1 cut(s) | 32 |
| AspS9I | GGNCC | 1 cut(s) | 82 |
| AsuHPI | GGTGA | 2 cut(s) | 80, 550 |
| AvaII | GGWCC | 1 cut(s) | 82 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BauI | CACGAG | 1 cut(s) | 118 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| BccI | CCATC | 2 cut(s) | 43, 536 |
| BcoDI | GTCTC | 2 cut(s) | 164, 332 |
| BfaI | CTAG | 3 cut(s) | 107, 219, 341 |
| BglII | AGATCT | 1 cut(s) | 553 |
| BisI | GCNGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 1 cut(s) | 526 |
| BmcAI | AGTACT | 1 cut(s) | 252 |
| Bme18I | GGWCC | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 1 cut(s) | 82 |
| BmsI | GCATC | 1 cut(s) | 621 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| BpmI | CTGGAG | 1 cut(s) | 410 |
| BpuEI | CTTGAG | 1 cut(s) | 188 |
| BsaJI | CCNNGG | 2 cut(s) | 213, 634 |
| BseDI | CCNNGG | 2 cut(s) | 213, 634 |
| BseGI | GGATG | 1 cut(s) | 528 |
| BseMII | CTCAG | 2 cut(s) | 290, 467 |
| BseX3I | CGGCCG | 2 cut(s) | 42, 522 |
| Bsh1285I | CGRYCG | 2 cut(s) | 45, 525 |
| BshFI | GGCC | 4 cut(s) | 44, 420, 491, 524 |
| BsiEI | CGRYCG | 2 cut(s) | 45, 525 |
| BsmAI | GTCTC | 2 cut(s) | 164, 332 |
| BsmBI | CGTCTC | 1 cut(s) | 164 |
| BsnI | GGCC | 4 cut(s) | 44, 420, 491, 524 |
| Bsp143I | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| BspACI | CCGC | 3 cut(s) | 65, 242, 525 |
| BspANI | GGCC | 4 cut(s) | 44, 420, 491, 524 |
| BspCNI | CTCAG | 2 cut(s) | 289, 468 |
| BspPI | GGATC | 1 cut(s) | 63 |
| BspQI | GCTCTTC | 1 cut(s) | 675 |
| BssECI | CCNNGG | 2 cut(s) | 213, 634 |
| BssMI | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| BssSI | CACGAG | 1 cut(s) | 118 |
| BssT1I | CCWWGG | 1 cut(s) | 634 |
| Bst2BI | CACGAG | 1 cut(s) | 118 |
| Bst4CI | ACNGT | 3 cut(s) | 175, 183, 208 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 599, 675 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 466 |
| BstC8I | GCNNGC | 2 cut(s) | 18, 367 |
| BstDEI | CTNAG | 3 cut(s) | 276, 476, 649 |
| BstF5I | GGATG | 1 cut(s) | 528 |
| BstHHI | GCGC | 1 cut(s) | 32 |
| BstKTI | GATC | 5 cut(s) | 58, 73, 415, 475, 556 |
| BstMAI | GTCTC | 2 cut(s) | 164, 332 |
| BstMBI | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| BstMCI | CGRYCG | 2 cut(s) | 45, 525 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 308, 466 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| BstX2I | RGATCY | 1 cut(s) | 553 |
| BstYI | RGATCY | 1 cut(s) | 553 |
| BstZI | CGGCCG | 2 cut(s) | 42, 522 |
| BsuRI | GGCC | 4 cut(s) | 44, 420, 491, 524 |
| BtsCI | GGATG | 1 cut(s) | 528 |
| BtsIMutI | CAGTG | 2 cut(s) | 213, 687 |
| Cac8I | GCNNGC | 2 cut(s) | 18, 367 |
| CfoI | GCGC | 1 cut(s) | 32 |
| Cfr13I | GGNCC | 1 cut(s) | 82 |
| Csp6I | GTAC | 2 cut(s) | 251, 388 |
| CviAII | CATG | 1 cut(s) | 299 |
| CviQI | GTAC | 2 cut(s) | 251, 388 |
| DdeI | CTNAG | 3 cut(s) | 276, 476, 649 |
| DpnI | GATC | 5 cut(s) | 57, 72, 414, 474, 555 |
| DpnII | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| EaeI | YGGCCR | 4 cut(s) | 42, 418, 489, 522 |
| EagI | CGGCCG | 2 cut(s) | 42, 522 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 599, 675 |
| EarI | CTCTTC | 3 cut(s) | 123, 599, 675 |
| EclXI | CGGCCG | 2 cut(s) | 42, 522 |
| Eco130I | CCWWGG | 1 cut(s) | 634 |
| Eco47I | GGWCC | 1 cut(s) | 82 |
| Eco52I | CGGCCG | 2 cut(s) | 42, 522 |
| Eco57I | CTGAAG | 1 cut(s) | 147 |
| EcoT14I | CCWWGG | 1 cut(s) | 634 |
| ErhI | CCWWGG | 1 cut(s) | 634 |
| Esp3I | CGTCTC | 1 cut(s) | 164 |
| FaeI | CATG | 1 cut(s) | 302 |
| FaiI | YATR | 7 cut(s) | 60, 179, 291, 300, 567, 597, 641 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 554, 586, 654, 686 |
| FatI | CATG | 1 cut(s) | 298 |
| FauI | CCCGC | 1 cut(s) | 58 |
| FblI | GTMKAC | 1 cut(s) | 630 |
| Fnu4HI | GCNGC | 1 cut(s) | 525 |
| FokI | GGATG | 1 cut(s) | 515 |
| Fsp4HI | GCNGC | 1 cut(s) | 525 |
| FspBI | CTAG | 3 cut(s) | 107, 219, 341 |
| GlaI | GCGC | 1 cut(s) | 31 |
| GluI | GCNGC | 1 cut(s) | 525 |
| GsuI | CTGGAG | 1 cut(s) | 410 |
| HaeIII | GGCC | 4 cut(s) | 44, 420, 491, 524 |
| HhaI | GCGC | 1 cut(s) | 32 |
| Hin1II | CATG | 1 cut(s) | 302 |
| Hin6I | GCGC | 1 cut(s) | 30 |
| HinP1I | GCGC | 1 cut(s) | 30 |
| HincII | GTYRAC | 1 cut(s) | 631 |
| HindII | GTYRAC | 1 cut(s) | 631 |
| HinfI | GANTC | 2 cut(s) | 121, 574 |
| HphI | GGTGA | 2 cut(s) | 80, 550 |
| Hpy166II | GTNNAC | 1 cut(s) | 631 |
| Hpy188I | TCNGA | 2 cut(s) | 477, 533 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 125, 341, 427, 616 |
| Hpy8I | GTNNAC | 1 cut(s) | 631 |
| HpyAV | CCTTC | 2 cut(s) | 446, 450 |
| HpyCH4III | ACNGT | 3 cut(s) | 175, 183, 208 |
| HpyCH4V | TGCA | 1 cut(s) | 643 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 308, 466 |
| HpyF3I | CTNAG | 3 cut(s) | 276, 476, 649 |
| Hsp92II | CATG | 1 cut(s) | 302 |
| HspAI | GCGC | 1 cut(s) | 30 |
| Kzo9I | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| LguI | GCTCTTC | 1 cut(s) | 675 |
| LmnI | GCTCC | 1 cut(s) | 37 |
| LpnPI | CCDG | 4 cut(s) | 138, 263, 351, 440 |
| LweI | GCATC | 1 cut(s) | 621 |
| MaeI | CTAG | 3 cut(s) | 107, 219, 341 |
| MaeIII | GTNAC | 3 cut(s) | 208, 514, 675 |
| MalI | GATC | 5 cut(s) | 57, 72, 414, 474, 555 |
| MboI | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| MboII | GAAGA | 6 cut(s) | 30, 140, 448, 616, 662, 665 |
| MflI | RGATCY | 1 cut(s) | 553 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 2 cut(s) | 92, 319 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MlyI | GAGTC | 1 cut(s) | 130 |
| MnlI | CCTC | 6 cut(s) | 124, 208, 232, 277, 471, 600 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MroXI | GAANNNNTTC | 1 cut(s) | 669 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 1 cut(s) | 660 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MspA1I | CMGCKG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 308, 466 |
| NdeII | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| NlaIII | CATG | 1 cut(s) | 302 |
| NmeAIII | GCCGAG | 1 cut(s) | 70 |
| NmuCI | GTSAC | 3 cut(s) | 208, 514, 675 |
| PciSI | GCTCTTC | 1 cut(s) | 675 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 590 |
| PdmI | GAANNNNTTC | 1 cut(s) | 669 |
| PfeI | GAWTC | 1 cut(s) | 574 |
| PkrI | GCNGC | 1 cut(s) | 526 |
| PleI | GAGTC | 1 cut(s) | 129 |
| PpsI | GAGTC | 1 cut(s) | 129 |
| PspPI | GGNCC | 1 cut(s) | 82 |
| PsuI | RGATCY | 1 cut(s) | 553 |
| RsaI | GTAC | 2 cut(s) | 252, 389 |
| RsaNI | GTAC | 2 cut(s) | 251, 388 |
| SalI | GTCGAC | 1 cut(s) | 629 |
| SapI | GCTCTTC | 1 cut(s) | 675 |
| SaqAI | TTAA | 1 cut(s) | 660 |
| SatI | GCNGC | 1 cut(s) | 525 |
| Sau3AI | GATC | 5 cut(s) | 55, 70, 412, 472, 553 |
| Sau96I | GGNCC | 1 cut(s) | 82 |
| ScaI | AGTACT | 1 cut(s) | 252 |
| SchI | GAGTC | 1 cut(s) | 130 |
| SetI | ASST | 9 cut(s) | 22, 51, 87, 282, 499, 572, 630, 640, 670 |
| SfaNI | GCATC | 1 cut(s) | 621 |
| SinI | GGWCC | 1 cut(s) | 82 |
| SmlI | CTYRAG | 1 cut(s) | 167 |
| SmoI | CTYRAG | 1 cut(s) | 167 |
| Sse9I | AATT | 2 cut(s) | 92, 319 |
| SsiI | CCGC | 3 cut(s) | 65, 242, 525 |
| SspMI | CTAG | 3 cut(s) | 107, 219, 341 |
| StyI | CCWWGG | 1 cut(s) | 634 |
| TaaI | ACNGT | 3 cut(s) | 175, 183, 208 |
| TaqI | TCGA | 1 cut(s) | 630 |
| TaqII | GACCGA | 3 cut(s) | 227, 574, 663 |
| TasI | AATT | 2 cut(s) | 92, 319 |
| TatI | WGTACW | 1 cut(s) | 250 |
| TauI | GCSGC | 1 cut(s) | 527 |
| TfiI | GAWTC | 1 cut(s) | 574 |
| Tru1I | TTAA | 1 cut(s) | 660 |
| Tru9I | TTAA | 1 cut(s) | 660 |
| TscAI | CASTG | 2 cut(s) | 213, 694 |
| TseFI | GTSAC | 3 cut(s) | 208, 514, 675 |
| Tsp45I | GTSAC | 3 cut(s) | 208, 514, 675 |
| TspDTI | ATGAA | 2 cut(s) | 287, 306 |
| TspRI | CASTG | 2 cut(s) | 213, 694 |
| VpaK11BI | GGWCC | 1 cut(s) | 82 |
| XapI | RAATTY | 1 cut(s) | 319 |
| XbaI | TCTAGA | 2 cut(s) | 106, 340 |
| XmiI | GTMKAC | 1 cut(s) | 630 |
| XmnI | GAANNNNTTC | 1 cut(s) | 669 |
| XspI | CTAG | 3 cut(s) | 107, 219, 341 |
| ZrmI | AGTACT | 1 cut(s) | 252 |