Rmu_sc0000035.1_g000032

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000035.1
OG0000063
Physical Location & Seq
Forward (+)
112635 .. 115742
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000035.1_g000032.1.cds

Sequence Viewer

Length: 2040 bp
atggcggaccagccgggcaaggccgaatcgagcgcagtgcggttcaaaaacaaaatggaggacataagtaacgatctcgatgacacttaccgtacagactctgtgatttctgttaattgtgagggaaaagtcgagcttggtccctgttggcgtaagattccccctgcttctgttgaagagttactcaagggtgagccgtcaagacttgttccggtccactgtcaatgtcgaggtgaagaaatttcatggaatcagtggtcagataaaccattcacaagttggcccacctatgaggaagcttggactacctgggttggaaagatgcttccttattatggtgaccattggaagaaggccaacatctatgacgcaataatgctctctgccaggcgcttcttgctcgacaaggccctgctcagcgctggattttgcttttggaattcatcatccaacactctagatttgcctctggggatgatgagtgtgagtttgcttgatgttgctgcgattgctgggtttaggcctcatggcaccagttatgactgcactggtgagttggggctgaaaactaaatttagttactgcttccatggtcgacatgaggcatatggaagttggatagcacagcataatagggattggaaacccaatgacaagagcaacaaagtcctcgtatttgaggatttccagcacataaaggaaaccatgcaaactaccagaatcaccgatcaagagcatatggcattcctcctctactggctctgcaggtatgtcttctgtgtaccttcgataggcattgaaaaagaatggtctcatttggcagaagttttgcatcaaagaactgatgtcgccttaggtgaattagtgctagcctggctgtatagggacctaggctcagtcagtacctttcctgccgatgaggttatggggtttgctttgacaaaccaaatcccaaaactacactcccctcgtgattgctttgcaacgttatggagtttcaaatcaaacccatgttggacgcacaccttgacaagaaggtatcccagtttcctaagaaataggttcatagatggtccaacgtccgatagtgccttagatgaggaaatagaagctgtgctaacgagtgtggtggtacaaagagatctgctgtacggagggatcaaaactggtaaatattatggagtccaggctgaattttacggcccgaaccatttcagtaggcagtttggttgtatacaaggaattccttactctggtcatgaaagtgttaattgttatacctcatggagggatgttttaataaatgctgcgaaaatcagaggggtctcaaattcctttcgttctacaaagttgaaaccattcctcaccaggtatttgccaacctctgaaactaccccaggctttgacaaatggtggcatagtcaaaccgaaggtcaattttcagcagaacatgatgggccctttgctatcttatatatgcattgtccattccgggatagctatcatctagaagttccaggctttccacctgctgatggagaaagggaagaaggtgaagaaggagaagctaaagttgacagctctctccctaccaacaagaatcgaaagaggaaacacaccacaaatgctcctgtgtcaactaggcagaagactatggaagtcacagctcaaggggaaagtgctgatcatgtcttcgtgcattgtgaagtggctaatttcttatggaaaaaattattttgggaagcaagagtggactggacaactccattagagagaaatgacttgctaagagaaaaccccatagcgtttggtaaaggtaaaaaggccagaaccctttggggttgtggggtgctagctgtagtttgggtggtctggatggaaagaaataaaagattatttgaaaactatggaggggtggagaaggaagacctgtgggagagagtcaagttttgggcatccttatgggtttctatttctaaggaattcaaggattataacctttcttccattattcttaactggcaagcagctgtagtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

679

Amino Acids

77.96

Weight (kDa)

6.42

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1995
AarI CACCTGC 1 cut(s) 1537
Acc36I ACCTGC 2 cut(s) 756, 1537
AccB1I GGYRCC 1 cut(s) 530
AccI GTMKAC 2 cut(s) 595, 1234
AciI CCGC 2 cut(s) 5, 40
AclI AACGTT 1 cut(s) 986
AclWI GGATC 1 cut(s) 1166
AcsI RAATTY 7 cut(s) 240, 439, 572, 1193, 1242, 1330, 1982
AfaI GTAC 5 cut(s) 94, 783, 904, 1134, 1151
AfeI AGCGCT 1 cut(s) 421
AfiI CCNNNNNNNGG 5 cut(s) 335, 791, 1253, 1287, 1535
AgsI TTSAA 7 cut(s) 46, 176, 800, 1000, 1354, 1901, 1987
AjnI CCWGG 7 cut(s) 308, 386, 872, 1185, 1367, 1396, 1516
AluBI AGCT 9 cut(s) 136, 299, 1112, 1500, 1568, 1581, 1667, 1856, 2030
AluI AGCT 9 cut(s) 136, 299, 1112, 1500, 1568, 1581, 1667, 1856, 2030
Alw26I GTCTC 2 cut(s) 816, 1330
AlwI GGATC 1 cut(s) 1166
AlwNI CAGNNNCTG 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 421
AoxI GGCC 8 cut(s) 21, 281, 354, 408, 521, 1201, 1457, 1824
ApaI GGGCCC 1 cut(s) 1461
ApeKI GCWGC 3 cut(s) 503, 1307, 2027
ApoI RAATTY 7 cut(s) 240, 439, 572, 1193, 1242, 1330, 1982
ArsI GACNNNNNNTTYG 2 cut(s) 1417, 1449
Asp700I GAANNNNTTC 2 cut(s) 1211, 1358
AspA2I CCTAGG 1 cut(s) 889
AspLEI GCGC 3 cut(s) 35, 393, 422
AsuC2I CCSGG 2 cut(s) 15, 1493
AsuHPI GGTGA 8 cut(s) 203, 245, 350, 563, 715, 869, 1357, 1565
AsuNHI GCTAGC 2 cut(s) 868, 1852
AvaII GGWCC 5 cut(s) 7, 140, 214, 886, 1073
AvrII CCTAGG 1 cut(s) 889
AxyI CCTNAGG 1 cut(s) 853
BaeGI GKGCMC 1 cut(s) 1461
BanI GGYRCC 1 cut(s) 530
BanII GRGCYC 1 cut(s) 1461
BauI CACGAG 1 cut(s) 969
BbsI GAAGAC 4 cut(s) 766, 1655, 1684, 1932
BbvI GCAGC 2 cut(s) 490, 1294
BccI CCATC 4 cut(s) 1064, 1448, 1529, 1870
BceAI ACGGC 2 cut(s) 181, 1216
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 7 cut(s) 310, 388, 874, 1187, 1369, 1398, 1518
BciVI GTATCC 1 cut(s) 1050
BclI TGATCA 1 cut(s) 1684
BcnI CCSGG 2 cut(s) 15, 1493
BcoDI GTCTC 2 cut(s) 816, 1330
BfaI CTAG 6 cut(s) 458, 869, 890, 1508, 1641, 1853
BfmI CTRYAG 3 cut(s) 763, 1857, 2031
BfoI RGCGCY 2 cut(s) 394, 423
BfuAI ACCTGC 2 cut(s) 756, 1537
BfuI GTATCC 1 cut(s) 1050
BglII AGATCT 1 cut(s) 1141
BisI GCNGC 3 cut(s) 504, 1308, 2028
BlnI CCTAGG 1 cut(s) 889
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 3 cut(s) 505, 1309, 2029
Bme1390I CCNGG 9 cut(s) 15, 310, 388, 874, 1187, 1369, 1398, 1493, 1518
Bme18I GGWCC 5 cut(s) 7, 140, 214, 886, 1073
BmiI GGNNCC 4 cut(s) 142, 532, 887, 1459
BmrFI CCNGG 9 cut(s) 15, 310, 388, 874, 1187, 1369, 1398, 1493, 1518
BmrI ACTGGG 1 cut(s) 1038
BmsI GCATC 3 cut(s) 312, 841, 1964
BmtI GCTAGC 2 cut(s) 872, 1856
BmuI ACTGGG 1 cut(s) 1038
BpiI GAAGAC 4 cut(s) 766, 1655, 1684, 1932
Bpu1102I GCTNAGC 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 170, 1653
BpuMI CCSGG 2 cut(s) 15, 1493
BsaBI GATNNNNATC 1 cut(s) 1500
BsaI GGTCTC 2 cut(s) 816, 1330
BsaJI CCNNGG 4 cut(s) 309, 589, 889, 1396
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 1612, 1642
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 791, 1253, 1287, 1535
Bse1I ACTGG 7 cut(s) 534, 553, 761, 1044, 1171, 1760, 2024
Bse21I CCTNAGG 1 cut(s) 853
Bse8I GATNNNNATC 1 cut(s) 1500
BseBI CCWGG 7 cut(s) 310, 388, 874, 1187, 1369, 1398, 1518
BseDI CCNNGG 4 cut(s) 309, 589, 889, 1396
BseGI GGATG 5 cut(s) 446, 480, 1297, 1881, 1955
BseJI GATNNNNATC 1 cut(s) 1500
BseLI CCNNNNNNNGG 5 cut(s) 335, 791, 1253, 1287, 1535
BseMII CTCAG 2 cut(s) 430, 909
BseNI ACTGG 7 cut(s) 534, 553, 761, 1044, 1171, 1760, 2024
BseRI GAGGAG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 1461
BseXI GCAGC 2 cut(s) 490, 1294
BseYI CCCAGC 1 cut(s) 512
BsgI GTGCAG 1 cut(s) 529
BshFI GGCC 8 cut(s) 23, 283, 356, 410, 523, 1203, 1459, 1826
BshNI GGYRCC 1 cut(s) 530
BsiSI CCGG 3 cut(s) 14, 212, 1492
BslFI GGGAC 2 cut(s) 126, 899
BslI CCNNNNNNNGG 5 cut(s) 335, 791, 1253, 1287, 1535
BsmAI GTCTC 2 cut(s) 816, 1330
BsmFI GGGAC 2 cut(s) 126, 899
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 8 cut(s) 23, 283, 356, 410, 523, 1203, 1459, 1826
Bso31I GGTCTC 2 cut(s) 816, 1330
Bsp120I GGGCCC 1 cut(s) 1457
Bsp1286I GDGCHC 1 cut(s) 1461
Bsp143I GATC 5 cut(s) 73, 727, 1141, 1158, 1684
Bsp1720I GCTNAGC 1 cut(s) 416
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 2 cut(s) 5, 40
BspANI GGCC 8 cut(s) 23, 283, 356, 410, 523, 1203, 1459, 1826
BspCNI CTCAG 2 cut(s) 429, 908
BspHI TCATGA 1 cut(s) 1258
BspLI GGNNCC 4 cut(s) 142, 532, 887, 1459
BspMAI CTGCAG 1 cut(s) 767
BspMI ACCTGC 2 cut(s) 756, 1537
BspOI GCTAGC 2 cut(s) 872, 1856
BspPI GGATC 1 cut(s) 1166
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 2 cut(s) 816, 1330
BsrI ACTGG 7 cut(s) 534, 553, 761, 1044, 1171, 1760, 2024
BssECI CCNNGG 4 cut(s) 309, 589, 889, 1396
BssMI GATC 5 cut(s) 73, 727, 1141, 1158, 1684
BssNAI GTATAC 1 cut(s) 1235
BssSI CACGAG 1 cut(s) 969
BssT1I CCWWGG 2 cut(s) 589, 889
Bst1107I GTATAC 1 cut(s) 1235
Bst2BI CACGAG 1 cut(s) 969
Bst2UI CCWGG 7 cut(s) 310, 388, 874, 1187, 1369, 1398, 1518
Bst4CI ACNGT 2 cut(s) 92, 221
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 870, 1854, 2025
BstDEI CTNAG 7 cut(s) 416, 853, 895, 1052, 1093, 1787, 1977
BstDSI CCRYGG 1 cut(s) 589
BstEII GGTNACC 1 cut(s) 338
BstENI CCTNNNNNAGG 2 cut(s) 789, 1285
BstF5I GGATG 5 cut(s) 446, 480, 1297, 1881, 1955
BstH2I RGCGCY 2 cut(s) 394, 423
BstHHI GCGC 3 cut(s) 35, 393, 422
BstKTI GATC 5 cut(s) 76, 730, 1144, 1161, 1687
BstMAI GTCTC 2 cut(s) 816, 1330
BstMBI GATC 5 cut(s) 73, 727, 1141, 1158, 1684
BstMWI GCNNNNNNNGC 3 cut(s) 397, 509, 874
BstNI CCWGG 7 cut(s) 310, 388, 874, 1187, 1369, 1398, 1518
BstPI GGTNACC 1 cut(s) 338
BstSCI CCNGG 9 cut(s) 13, 308, 386, 872, 1185, 1367, 1396, 1491, 1516
BstSFI CTRYAG 3 cut(s) 763, 1857, 2031
BstSLI GKGCMC 1 cut(s) 1461
BstV1I GCAGC 2 cut(s) 490, 1294
BstV2I GAAGAC 4 cut(s) 766, 1655, 1684, 1932
BstX2I RGATCY 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1141
BstZ17I GTATAC 1 cut(s) 1235
Bsu36I CCTNAGG 1 cut(s) 853
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 8 cut(s) 23, 283, 356, 410, 523, 1203, 1459, 1826
BtgI CCRYGG 1 cut(s) 589
BtsCI GGATG 5 cut(s) 446, 480, 1297, 1881, 1955
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 4 cut(s) 42, 217, 260, 546
BveI ACCTGC 2 cut(s) 756, 1537
Cac8I GCNNGC 3 cut(s) 870, 1854, 2025
CaiI CAGNNNCTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 1258
CfoI GCGC 3 cut(s) 35, 393, 422
CseI GACGC 2 cut(s) 377, 1027
CsiI ACCWGGT 1 cut(s) 1367
Csp6I GTAC 5 cut(s) 93, 782, 903, 1133, 1150
CviQI GTAC 5 cut(s) 93, 782, 903, 1133, 1150
DdeI CTNAG 7 cut(s) 416, 853, 895, 1052, 1093, 1787, 1977
DpnI GATC 5 cut(s) 75, 729, 1143, 1160, 1686
DpnII GATC 5 cut(s) 73, 727, 1141, 1158, 1684
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 589, 889
Eco147I AGGCCT 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 1461
Eco31I GGTCTC 2 cut(s) 816, 1330
Eco47I GGWCC 5 cut(s) 7, 140, 214, 886, 1073
Eco47III AGCGCT 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 853
Eco91I GGTNACC 1 cut(s) 338
EcoNI CCTNNNNNAGG 2 cut(s) 789, 1285
EcoO109I RGGNCCY 3 cut(s) 409, 886, 1458
EcoO65I GGTNACC 1 cut(s) 338
EcoRI GAATTC 3 cut(s) 439, 1242, 1982
EcoRII CCWGG 7 cut(s) 308, 386, 872, 1185, 1367, 1396, 1516
EcoT14I CCWWGG 2 cut(s) 589, 889
EcoT22I ATGCAT 1 cut(s) 1482
EcoT38I GRGCYC 1 cut(s) 1461
ErhI CCWWGG 2 cut(s) 589, 889
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 2 cut(s) 126, 899
FauNDI CATATG 2 cut(s) 607, 738
FbaI TGATCA 1 cut(s) 1684
FblI GTMKAC 2 cut(s) 595, 1234
Fnu4HI GCNGC 3 cut(s) 504, 1308, 2028
FokI GGATG 5 cut(s) 433, 487, 1304, 1888, 1942
FriOI GRGCYC 1 cut(s) 1461
Fsp4HI GCNGC 3 cut(s) 504, 1308, 2028
FspBI CTAG 6 cut(s) 458, 869, 890, 1508, 1641, 1853
GlaI GCGC 3 cut(s) 34, 392, 421
GluI GCNGC 3 cut(s) 504, 1308, 2028
GsaI CCCAGC 1 cut(s) 516
HaeII RGCGCY 2 cut(s) 394, 423
HaeIII GGCC 8 cut(s) 23, 283, 356, 410, 523, 1203, 1459, 1826
HapII CCGG 3 cut(s) 14, 212, 1492
HgaI GACGC 2 cut(s) 377, 1027
HhaI GCGC 3 cut(s) 35, 393, 422
Hin6I GCGC 3 cut(s) 33, 391, 420
HinP1I GCGC 3 cut(s) 33, 391, 420
HincII GTYRAC 3 cut(s) 596, 1576, 1638
HindII GTYRAC 3 cut(s) 596, 1576, 1638
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 8 cut(s) 26, 98, 157, 250, 720, 1182, 1600, 1941
HpaII CCGG 3 cut(s) 14, 212, 1492
HphI GGTGA 8 cut(s) 203, 245, 350, 563, 715, 869, 1357, 1565
Hpy166II GTNNAC 7 cut(s) 217, 596, 782, 1235, 1576, 1638, 1753
Hpy188I TCNGA 4 cut(s) 262, 1084, 1319, 1387
Hpy188III TCNNGA 8 cut(s) 77, 201, 458, 731, 971, 1259, 1508, 1873
Hpy8I GTNNAC 7 cut(s) 217, 596, 782, 1235, 1576, 1638, 1753
HpyAV CCTTC 7 cut(s) 346, 795, 1029, 1424, 1544, 1553, 1915
HpyCH4III ACNGT 2 cut(s) 92, 221
HpyCH4IV ACGT 2 cut(s) 986, 1079
HpyCH4V TGCA 7 cut(s) 546, 709, 765, 832, 983, 1480, 1699
HpyF10VI GCNNNNNNNGC 3 cut(s) 397, 509, 874
HpyF3I CTNAG 7 cut(s) 416, 853, 895, 1052, 1093, 1787, 1977
HpySE526I ACGT 2 cut(s) 986, 1079
HspAI GCGC 3 cut(s) 33, 391, 420
Ksp22I TGATCA 1 cut(s) 1684
Kzo9I GATC 5 cut(s) 73, 727, 1141, 1158, 1684
LmnI GCTCC 1 cut(s) 1633
Lsp1109I GCAGC 2 cut(s) 490, 1294
LweI GCATC 3 cut(s) 312, 841, 1964
MabI ACCWGGT 1 cut(s) 1367
MaeI CTAG 6 cut(s) 458, 869, 890, 1508, 1641, 1853
MaeII ACGT 2 cut(s) 986, 1079
MaeIII GTNAC 5 cut(s) 68, 180, 338, 578, 1660
MalI GATC 5 cut(s) 75, 729, 1143, 1160, 1686
MboI GATC 5 cut(s) 73, 727, 1141, 1158, 1684
MflI RGATCY 1 cut(s) 1141
MhlI GDGCHC 1 cut(s) 1461
MlyI GAGTC 3 cut(s) 92, 1191, 1950
MmeI TCCRAC 5 cut(s) 295, 474, 596, 995, 1100
Mph1103I ATGCAT 1 cut(s) 1482
MroXI GAANNNNTTC 2 cut(s) 1211, 1358
MseI TTAA 4 cut(s) 114, 1269, 1298, 2016
MslI CAYNNNNRTG 2 cut(s) 1263, 1960
MspA1I CMGCKG 1 cut(s) 2030
MspI CCGG 3 cut(s) 14, 212, 1492
MspR9I CCNGG 9 cut(s) 15, 310, 388, 874, 1187, 1369, 1398, 1493, 1518
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 7 cut(s) 310, 388, 874, 1187, 1369, 1398, 1518
MwoI GCNNNNNNNGC 3 cut(s) 397, 509, 874
NciI CCSGG 2 cut(s) 15, 1493
NcoI CCATGG 1 cut(s) 589
NdeI CATATG 2 cut(s) 607, 738
NdeII GATC 5 cut(s) 73, 727, 1141, 1158, 1684
NheI GCTAGC 2 cut(s) 868, 1852
NlaIV GGNNCC 4 cut(s) 142, 532, 887, 1459
NmuCI GTSAC 2 cut(s) 338, 1660
NsiI ATGCAT 1 cut(s) 1482
PagI TCATGA 1 cut(s) 1258
PaqCI CACCTGC 1 cut(s) 1537
PceI AGGCCT 1 cut(s) 523
PctI GAATGC 1 cut(s) 743
PdmI GAANNNNTTC 2 cut(s) 1211, 1358
PfeI GAWTC 5 cut(s) 26, 157, 250, 720, 1600
PfoI TCCNGGA 1 cut(s) 1491
PkrI GCNGC 3 cut(s) 505, 1309, 2029
PleI GAGTC 3 cut(s) 92, 1190, 1949
PpsI GAGTC 3 cut(s) 92, 1190, 1949
PpuMI RGGWCCY 1 cut(s) 886
PsiI TTATAA 1 cut(s) 1995
Psp1406I AACGTT 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 886
Psp6I CCWGG 7 cut(s) 308, 386, 872, 1185, 1367, 1396, 1516
PspEI GGTNACC 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 7 cut(s) 308, 386, 872, 1185, 1367, 1396, 1516
PspN4I GGNNCC 4 cut(s) 142, 532, 887, 1459
PspOMI GGGCCC 1 cut(s) 1457
PspPPI RGGWCCY 1 cut(s) 886
PstI CTGCAG 1 cut(s) 767
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 1141
PvuII CAGCTG 1 cut(s) 2030
RsaI GTAC 5 cut(s) 94, 783, 904, 1134, 1151
RsaNI GTAC 5 cut(s) 93, 782, 903, 1133, 1150
RseI CAYNNNNRTG 2 cut(s) 1263, 1960
SalI GTCGAC 1 cut(s) 594
SaqAI TTAA 4 cut(s) 114, 1269, 1298, 2016
SatI GCNGC 3 cut(s) 504, 1308, 2028
Sau3AI GATC 5 cut(s) 73, 727, 1141, 1158, 1684
SchI GAGTC 3 cut(s) 92, 1191, 1950
ScrFI CCNGG 9 cut(s) 15, 310, 388, 874, 1187, 1369, 1398, 1493, 1518
SduI GDGCHC 1 cut(s) 1461
SexAI ACCWGGT 1 cut(s) 1367
SfaNI GCATC 3 cut(s) 312, 841, 1964
SfcI CTRYAG 3 cut(s) 763, 1857, 2031
SinI GGWCC 5 cut(s) 7, 140, 214, 886, 1073
SmiMI CAYNNNNRTG 2 cut(s) 1263, 1960
SmlI CTYRAG 2 cut(s) 185, 1668
SmoI CTYRAG 2 cut(s) 185, 1668
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 2 cut(s) 5, 40
SspI AATATT 1 cut(s) 1175
SspMI CTAG 6 cut(s) 458, 869, 890, 1508, 1641, 1853
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 9 cut(s) 13, 308, 386, 872, 1185, 1367, 1396, 1491, 1516
StyI CCWWGG 2 cut(s) 589, 889
TaaI ACNGT 2 cut(s) 92, 221
TaiI ACGT 2 cut(s) 989, 1082
TaqI TCGA 8 cut(s) 29, 78, 132, 229, 402, 595, 788, 1603
TfiI GAWTC 5 cut(s) 26, 157, 250, 720, 1600
Tru1I TTAA 4 cut(s) 114, 1269, 1298, 2016
Tru9I TTAA 4 cut(s) 114, 1269, 1298, 2016
TscAI CASTG 4 cut(s) 42, 224, 260, 553
TseFI GTSAC 2 cut(s) 338, 1660
TseI GCWGC 3 cut(s) 503, 1307, 2027
Tsp45I GTSAC 2 cut(s) 338, 1660
TspDTI ATGAA 4 cut(s) 234, 432, 1054, 1275
TspGWI ACGGA 1 cut(s) 1167
TspRI CASTG 4 cut(s) 42, 224, 260, 553
VpaK11BI GGWCC 5 cut(s) 7, 140, 214, 886, 1073
XagI CCTNNNNNAGG 2 cut(s) 789, 1285
XapI RAATTY 7 cut(s) 240, 439, 572, 1193, 1242, 1330, 1982
XbaI TCTAGA 2 cut(s) 457, 1507
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XmaJI CCTAGG 1 cut(s) 889
XmiI GTMKAC 2 cut(s) 595, 1234
XmnI GAANNNNTTC 2 cut(s) 1211, 1358
XspI CTAG 6 cut(s) 458, 869, 890, 1508, 1641, 1853
Zsp2I ATGCAT 1 cut(s) 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.