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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 545 |
| AccII | CGCG | 1 cut(s) | 434 |
| AciI | CCGC | 4 cut(s) | 170, 196, 238, 432 |
| AclI | AACGTT | 1 cut(s) | 540 |
| AclWI | GGATC | 1 cut(s) | 505 |
| AcoI | YGGCCR | 1 cut(s) | 171 |
| AcsI | RAATTY | 2 cut(s) | 144, 257 |
| AcuI | CTGAAG | 1 cut(s) | 38 |
| AgsI | TTSAA | 4 cut(s) | 244, 308, 426, 463 |
| AjnI | CCWGG | 1 cut(s) | 513 |
| AluBI | AGCT | 6 cut(s) | 10, 112, 485, 490, 533, 577 |
| AluI | AGCT | 6 cut(s) | 10, 112, 485, 490, 533, 577 |
| Alw21I | GWGCWC | 2 cut(s) | 12, 579 |
| Alw26I | GTCTC | 1 cut(s) | 290 |
| AlwI | GGATC | 1 cut(s) | 505 |
| AoxI | GGCC | 2 cut(s) | 171, 429 |
| ApeKI | GCWGC | 3 cut(s) | 378, 527, 530 |
| ApoI | RAATTY | 2 cut(s) | 144, 257 |
| AspLEI | GCGC | 1 cut(s) | 383 |
| AspS9I | GGNCC | 2 cut(s) | 401, 429 |
| AsuHPI | GGTGA | 1 cut(s) | 433 |
| AvaII | GGWCC | 1 cut(s) | 401 |
| BanII | GRGCYC | 2 cut(s) | 12, 579 |
| BbsI | GAAGAC | 2 cut(s) | 44, 170 |
| Bbv12I | GWGCWC | 2 cut(s) | 12, 579 |
| BbvI | GCAGC | 3 cut(s) | 365, 514, 542 |
| BccI | CCATC | 1 cut(s) | 464 |
| BciT130I | CCWGG | 1 cut(s) | 515 |
| BcoDI | GTCTC | 1 cut(s) | 290 |
| BfaI | CTAG | 2 cut(s) | 386, 491 |
| BfmI | CTRYAG | 2 cut(s) | 84, 528 |
| BglII | AGATCT | 1 cut(s) | 687 |
| BisI | GCNGC | 6 cut(s) | 171, 196, 379, 432, 528, 531 |
| BlpI | GCTNAGC | 1 cut(s) | 486 |
| BlsI | GCNGC | 6 cut(s) | 172, 197, 380, 433, 529, 532 |
| Bme1390I | CCNGG | 1 cut(s) | 515 |
| Bme18I | GGWCC | 1 cut(s) | 401 |
| BmgT120I | GGNCC | 2 cut(s) | 401, 429 |
| BmrFI | CCNGG | 1 cut(s) | 515 |
| BpiI | GAAGAC | 2 cut(s) | 44, 170 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 486 |
| BpuEI | CTTGAG | 1 cut(s) | 563 |
| Bse1I | ACTGG | 2 cut(s) | 379, 674 |
| Bse3DI | GCAATG | 2 cut(s) | 157, 654 |
| BseBI | CCWGG | 1 cut(s) | 515 |
| BseMI | GCAATG | 2 cut(s) | 157, 654 |
| BseMII | CTCAG | 1 cut(s) | 477 |
| BseNI | ACTGG | 2 cut(s) | 379, 674 |
| BseXI | GCAGC | 3 cut(s) | 365, 514, 542 |
| Bsh1236I | CGCG | 1 cut(s) | 434 |
| BshFI | GGCC | 2 cut(s) | 173, 431 |
| BsiHKAI | GWGCWC | 2 cut(s) | 12, 579 |
| BslFI | GGGAC | 2 cut(s) | 383, 617 |
| BsmAI | GTCTC | 1 cut(s) | 290 |
| BsmFI | GGGAC | 2 cut(s) | 383, 617 |
| BsnI | GGCC | 2 cut(s) | 173, 431 |
| Bsp1286I | GDGCHC | 2 cut(s) | 12, 579 |
| Bsp143I | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 486 |
| BspACI | CCGC | 4 cut(s) | 170, 196, 238, 432 |
| BspANI | GGCC | 2 cut(s) | 173, 431 |
| BspCNI | CTCAG | 1 cut(s) | 478 |
| BspFNI | CGCG | 1 cut(s) | 434 |
| BspMAI | CTGCAG | 2 cut(s) | 88, 532 |
| BspPI | GGATC | 1 cut(s) | 505 |
| BspQI | GCTCTTC | 1 cut(s) | 567 |
| BsrDI | GCAATG | 2 cut(s) | 157, 654 |
| BsrI | ACTGG | 2 cut(s) | 379, 674 |
| BssMI | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| Bst2UI | CCWGG | 1 cut(s) | 515 |
| Bst4CI | ACNGT | 2 cut(s) | 81, 214 |
| Bst6I | CTCTTC | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 1 cut(s) | 114 |
| BstDEI | CTNAG | 1 cut(s) | 486 |
| BstFNI | CGCG | 1 cut(s) | 434 |
| BstHHI | GCGC | 1 cut(s) | 383 |
| BstKTI | GATC | 5 cut(s) | 157, 313, 513, 637, 690 |
| BstMAI | GTCTC | 1 cut(s) | 290 |
| BstMBI | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 16 |
| BstNI | CCWGG | 1 cut(s) | 515 |
| BstNSI | RCATGY | 1 cut(s) | 356 |
| BstSCI | CCNGG | 1 cut(s) | 513 |
| BstSFI | CTRYAG | 2 cut(s) | 84, 528 |
| BstUI | CGCG | 1 cut(s) | 434 |
| BstV1I | GCAGC | 3 cut(s) | 365, 514, 542 |
| BstV2I | GAAGAC | 2 cut(s) | 44, 170 |
| BstX2I | RGATCY | 1 cut(s) | 687 |
| BstYI | RGATCY | 1 cut(s) | 687 |
| BsuRI | GGCC | 2 cut(s) | 173, 431 |
| BtsIMutI | CAGTG | 3 cut(s) | 219, 340, 372 |
| Cac8I | GCNNGC | 1 cut(s) | 114 |
| CfoI | GCGC | 1 cut(s) | 383 |
| Cfr13I | GGNCC | 2 cut(s) | 401, 429 |
| CseI | GACGC | 2 cut(s) | 404, 671 |
| CviAII | CATG | 8 cut(s) | 16, 295, 353, 523, 566, 596, 632, 678 |
| DdeI | CTNAG | 1 cut(s) | 486 |
| DpnI | GATC | 5 cut(s) | 156, 312, 512, 636, 689 |
| DpnII | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| DraI | TTTAAA | 1 cut(s) | 537 |
| EaeI | YGGCCR | 1 cut(s) | 171 |
| Eam1104I | CTCTTC | 1 cut(s) | 567 |
| EarI | CTCTTC | 1 cut(s) | 567 |
| Ecl136II | GAGCTC | 2 cut(s) | 10, 577 |
| Eco24I | GRGCYC | 2 cut(s) | 12, 579 |
| Eco47I | GGWCC | 1 cut(s) | 401 |
| Eco53kI | GAGCTC | 2 cut(s) | 10, 577 |
| Eco57I | CTGAAG | 1 cut(s) | 38 |
| EcoICRI | GAGCTC | 2 cut(s) | 10, 577 |
| EcoRII | CCWGG | 1 cut(s) | 513 |
| EcoT38I | GRGCYC | 2 cut(s) | 12, 579 |
| FaeI | CATG | 8 cut(s) | 19, 298, 356, 526, 569, 599, 635, 681 |
| FaqI | GGGAC | 2 cut(s) | 383, 617 |
| FatI | CATG | 8 cut(s) | 15, 294, 352, 522, 565, 595, 631, 677 |
| Fnu4HI | GCNGC | 6 cut(s) | 171, 196, 379, 432, 528, 531 |
| FriOI | GRGCYC | 2 cut(s) | 12, 579 |
| Fsp4HI | GCNGC | 6 cut(s) | 171, 196, 379, 432, 528, 531 |
| FspBI | CTAG | 2 cut(s) | 386, 491 |
| GlaI | GCGC | 1 cut(s) | 382 |
| GluI | GCNGC | 6 cut(s) | 171, 196, 379, 432, 528, 531 |
| HaeIII | GGCC | 2 cut(s) | 173, 431 |
| HgaI | GACGC | 2 cut(s) | 404, 671 |
| HhaI | GCGC | 1 cut(s) | 383 |
| Hin1II | CATG | 8 cut(s) | 19, 298, 356, 526, 569, 599, 635, 681 |
| Hin6I | GCGC | 1 cut(s) | 381 |
| HinP1I | GCGC | 1 cut(s) | 381 |
| HincII | GTYRAC | 2 cut(s) | 123, 220 |
| HindII | GTYRAC | 2 cut(s) | 123, 220 |
| HinfI | GANTC | 1 cut(s) | 496 |
| HphI | GGTGA | 1 cut(s) | 433 |
| Hpy166II | GTNNAC | 2 cut(s) | 123, 220 |
| Hpy188III | TCNNGA | 6 cut(s) | 158, 262, 287, 386, 452, 638 |
| Hpy8I | GTNNAC | 2 cut(s) | 123, 220 |
| HpyAV | CCTTC | 2 cut(s) | 109, 355 |
| HpyCH4III | ACNGT | 2 cut(s) | 81, 214 |
| HpyCH4IV | ACGT | 1 cut(s) | 540 |
| HpyCH4V | TGCA | 5 cut(s) | 86, 150, 298, 530, 677 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 486 |
| HpySE526I | ACGT | 1 cut(s) | 540 |
| Hsp92II | CATG | 8 cut(s) | 19, 298, 356, 526, 569, 599, 635, 681 |
| HspAI | GCGC | 1 cut(s) | 381 |
| Kzo9I | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| LguI | GCTCTTC | 1 cut(s) | 567 |
| LpnPI | CCDG | 6 cut(s) | 41, 150, 360, 500, 527, 655 |
| Lsp1109I | GCAGC | 3 cut(s) | 365, 514, 542 |
| MaeI | CTAG | 2 cut(s) | 386, 491 |
| MaeII | ACGT | 1 cut(s) | 540 |
| MaeIII | GTNAC | 3 cut(s) | 181, 322, 452 |
| MalI | GATC | 5 cut(s) | 156, 312, 512, 636, 689 |
| MboI | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| MboII | GAAGA | 8 cut(s) | 44, 57, 139, 175, 320, 414, 584, 697 |
| MflI | RGATCY | 1 cut(s) | 687 |
| MhlI | GDGCHC | 2 cut(s) | 12, 579 |
| MluCI | AATT | 4 cut(s) | 144, 257, 303, 339 |
| MlyI | GAGTC | 1 cut(s) | 505 |
| MnlI | CCTC | 4 cut(s) | 38, 53, 82, 302 |
| MseI | TTAA | 2 cut(s) | 95, 536 |
| MspA1I | CMGCKG | 1 cut(s) | 170 |
| MspR9I | CCNGG | 1 cut(s) | 515 |
| MvaI | CCWGG | 1 cut(s) | 515 |
| MvnI | CGCG | 1 cut(s) | 434 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 16 |
| NdeII | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| NlaIII | CATG | 8 cut(s) | 19, 298, 356, 526, 569, 599, 635, 681 |
| NmuCI | GTSAC | 1 cut(s) | 452 |
| NspI | RCATGY | 1 cut(s) | 356 |
| PciSI | GCTCTTC | 1 cut(s) | 567 |
| PfoI | TCCNGGA | 1 cut(s) | 513 |
| PkrI | GCNGC | 6 cut(s) | 172, 197, 380, 433, 529, 532 |
| PleI | GAGTC | 1 cut(s) | 504 |
| PpsI | GAGTC | 1 cut(s) | 504 |
| PsiI | TTATAA | 1 cut(s) | 545 |
| Psp124BI | GAGCTC | 2 cut(s) | 12, 579 |
| Psp1406I | AACGTT | 1 cut(s) | 540 |
| Psp6I | CCWGG | 1 cut(s) | 513 |
| PspGI | CCWGG | 1 cut(s) | 513 |
| PspPI | GGNCC | 2 cut(s) | 401, 429 |
| PstI | CTGCAG | 2 cut(s) | 88, 532 |
| PsuI | RGATCY | 1 cut(s) | 687 |
| SacI | GAGCTC | 2 cut(s) | 12, 579 |
| SapI | GCTCTTC | 1 cut(s) | 567 |
| SaqAI | TTAA | 2 cut(s) | 95, 536 |
| SatI | GCNGC | 6 cut(s) | 171, 196, 379, 432, 528, 531 |
| Sau3AI | GATC | 5 cut(s) | 154, 310, 510, 634, 687 |
| Sau96I | GGNCC | 2 cut(s) | 401, 429 |
| SchI | GAGTC | 1 cut(s) | 505 |
| ScrFI | CCNGG | 1 cut(s) | 515 |
| SduI | GDGCHC | 2 cut(s) | 12, 579 |
| SfcI | CTRYAG | 2 cut(s) | 84, 528 |
| SinI | GGWCC | 1 cut(s) | 401 |
| SmlI | CTYRAG | 1 cut(s) | 578 |
| SmoI | CTYRAG | 1 cut(s) | 578 |
| Sse9I | AATT | 4 cut(s) | 144, 257, 303, 339 |
| SsiI | CCGC | 4 cut(s) | 170, 196, 238, 432 |
| SspMI | CTAG | 2 cut(s) | 386, 491 |
| SstI | GAGCTC | 2 cut(s) | 12, 579 |
| StyD4I | CCNGG | 1 cut(s) | 513 |
| TaaI | ACNGT | 2 cut(s) | 81, 214 |
| TaiI | ACGT | 1 cut(s) | 543 |
| TaqI | TCGA | 3 cut(s) | 157, 288, 499 |
| TaqII | GACCGA | 1 cut(s) | 259 |
| TasI | AATT | 4 cut(s) | 144, 257, 303, 339 |
| TauI | GCSGC | 3 cut(s) | 173, 198, 434 |
| Tru1I | TTAA | 2 cut(s) | 95, 536 |
| Tru9I | TTAA | 2 cut(s) | 95, 536 |
| TscAI | CASTG | 3 cut(s) | 219, 340, 379 |
| TseFI | GTSAC | 1 cut(s) | 452 |
| TseI | GCWGC | 3 cut(s) | 378, 527, 530 |
| Tsp45I | GTSAC | 1 cut(s) | 452 |
| TspDTI | ATGAA | 3 cut(s) | 585, 657, 668 |
| TspRI | CASTG | 3 cut(s) | 219, 340, 379 |
| VpaK11BI | GGWCC | 1 cut(s) | 401 |
| XapI | RAATTY | 2 cut(s) | 144, 257 |
| XbaI | TCTAGA | 1 cut(s) | 385 |
| XceI | RCATGY | 1 cut(s) | 356 |
| XspI | CTAG | 2 cut(s) | 386, 491 |