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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 230, 341 |
| AccI | GTMKAC | 1 cut(s) | 206 |
| AccII | CGCG | 1 cut(s) | 353 |
| AciI | CCGC | 1 cut(s) | 353 |
| AcsI | RAATTY | 2 cut(s) | 116, 137 |
| AfaI | GTAC | 2 cut(s) | 131, 399 |
| AgsI | TTSAA | 2 cut(s) | 20, 122 |
| AjiI | CACGTC | 1 cut(s) | 337 |
| AluBI | AGCT | 1 cut(s) | 305 |
| AluI | AGCT | 1 cut(s) | 305 |
| Alw26I | GTCTC | 1 cut(s) | 293 |
| AoxI | GGCC | 2 cut(s) | 105, 198 |
| ApeKI | GCWGC | 1 cut(s) | 24 |
| ApoI | RAATTY | 2 cut(s) | 116, 137 |
| AsiSI | GCGATCGC | 1 cut(s) | 265 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 1 cut(s) | 198 |
| BanII | GRGCYC | 1 cut(s) | 231 |
| BbsI | GAAGAC | 1 cut(s) | 281 |
| BbvI | GCAGC | 1 cut(s) | 11 |
| BceAI | ACGGC | 2 cut(s) | 185, 380 |
| BcoDI | GTCTC | 1 cut(s) | 293 |
| BisI | GCNGC | 1 cut(s) | 25 |
| BlsI | GCNGC | 1 cut(s) | 26 |
| BmgBI | CACGTC | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 1 cut(s) | 198 |
| BmiI | GGNNCC | 1 cut(s) | 168 |
| BoxI | GACNNNNGTC | 1 cut(s) | 281 |
| BpiI | GAAGAC | 1 cut(s) | 281 |
| Bpu10I | CCTNAGC | 1 cut(s) | 59 |
| BpuEI | CTTGAG | 3 cut(s) | 182, 195, 291 |
| BsaJI | CCNNGG | 1 cut(s) | 64 |
| Bse1I | ACTGG | 1 cut(s) | 197 |
| BseDI | CCNNGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 50 |
| BseNI | ACTGG | 1 cut(s) | 197 |
| BseXI | GCAGC | 1 cut(s) | 11 |
| BseYI | CCCAGC | 1 cut(s) | 286 |
| Bsh1236I | CGCG | 1 cut(s) | 353 |
| Bsh1285I | CGRYCG | 1 cut(s) | 265 |
| BshFI | GGCC | 2 cut(s) | 107, 200 |
| BsiEI | CGRYCG | 1 cut(s) | 265 |
| BslFI | GGGAC | 1 cut(s) | 269 |
| BsmAI | GTCTC | 1 cut(s) | 293 |
| BsmFI | GGGAC | 1 cut(s) | 269 |
| BsmI | GAATGC | 1 cut(s) | 101 |
| BsnI | GGCC | 2 cut(s) | 107, 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 231 |
| Bsp143I | GATC | 2 cut(s) | 262, 369 |
| BspACI | CCGC | 1 cut(s) | 353 |
| BspANI | GGCC | 2 cut(s) | 107, 200 |
| BspCNI | CTCAG | 1 cut(s) | 51 |
| BspFNI | CGCG | 1 cut(s) | 353 |
| BspLI | GGNNCC | 1 cut(s) | 168 |
| BsrI | ACTGG | 1 cut(s) | 197 |
| BssECI | CCNNGG | 1 cut(s) | 64 |
| BssMI | GATC | 2 cut(s) | 262, 369 |
| BssNAI | GTATAC | 1 cut(s) | 207 |
| Bst1107I | GTATAC | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 1 cut(s) | 11 |
| BstDEI | CTNAG | 1 cut(s) | 59 |
| BstFNI | CGCG | 1 cut(s) | 353 |
| BstKTI | GATC | 2 cut(s) | 265, 372 |
| BstMAI | GTCTC | 1 cut(s) | 293 |
| BstMBI | GATC | 2 cut(s) | 262, 369 |
| BstMCI | CGRYCG | 1 cut(s) | 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 281 |
| BstUI | CGCG | 1 cut(s) | 353 |
| BstV1I | GCAGC | 1 cut(s) | 11 |
| BstV2I | GAAGAC | 1 cut(s) | 281 |
| BstZ17I | GTATAC | 1 cut(s) | 207 |
| BsuRI | GGCC | 2 cut(s) | 107, 200 |
| BtrI | CACGTC | 1 cut(s) | 337 |
| Cac8I | GCNNGC | 1 cut(s) | 11 |
| Cfr13I | GGNCC | 1 cut(s) | 198 |
| Csp6I | GTAC | 2 cut(s) | 130, 398 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 169, 204 |
| CviJI | RGCY | 9 cut(s) | 24, 63, 107, 151, 167, 200, 229, 305, 395 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 63, 107, 151, 167, 200, 229, 305, 395 |
| CviQI | GTAC | 2 cut(s) | 130, 398 |
| DdeI | CTNAG | 1 cut(s) | 59 |
| DpnI | GATC | 2 cut(s) | 264, 371 |
| DpnII | GATC | 2 cut(s) | 262, 369 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 230, 341 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 230, 341 |
| Eco24I | GRGCYC | 1 cut(s) | 231 |
| EcoT38I | GRGCYC | 1 cut(s) | 231 |
| FaiI | YATR | 1 cut(s) | 207 |
| FaqI | GGGAC | 1 cut(s) | 269 |
| FblI | GTMKAC | 1 cut(s) | 206 |
| Fnu4HI | GCNGC | 1 cut(s) | 25 |
| FriOI | GRGCYC | 1 cut(s) | 231 |
| Fsp4HI | GCNGC | 1 cut(s) | 25 |
| GluI | GCNGC | 1 cut(s) | 25 |
| GsaI | CCCAGC | 1 cut(s) | 290 |
| HaeIII | GGCC | 2 cut(s) | 107, 200 |
| HincII | GTYRAC | 1 cut(s) | 190 |
| HindII | GTYRAC | 1 cut(s) | 190 |
| Hpy166II | GTNNAC | 3 cut(s) | 190, 207, 400 |
| Hpy188I | TCNGA | 1 cut(s) | 88 |
| Hpy188III | TCNNGA | 6 cut(s) | 58, 122, 212, 247, 358, 411 |
| Hpy8I | GTNNAC | 3 cut(s) | 190, 207, 400 |
| Hpy99I | CGWCG | 1 cut(s) | 236 |
| HpyCH4IV | ACGT | 1 cut(s) | 336 |
| HpyCH4V | TGCA | 1 cut(s) | 99 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 1 cut(s) | 59 |
| HpySE526I | ACGT | 1 cut(s) | 336 |
| Kzo9I | GATC | 2 cut(s) | 262, 369 |
| LmnI | GCTCC | 1 cut(s) | 172 |
| LpnPI | CCDG | 5 cut(s) | 63, 71, 85, 178, 300 |
| Lsp1109I | GCAGC | 1 cut(s) | 11 |
| MaeII | ACGT | 1 cut(s) | 336 |
| MalI | GATC | 2 cut(s) | 264, 371 |
| MboI | GATC | 2 cut(s) | 262, 369 |
| MboII | GAAGA | 3 cut(s) | 283, 286, 373 |
| MhlI | GDGCHC | 1 cut(s) | 231 |
| MluCI | AATT | 3 cut(s) | 116, 137, 387 |
| MnlI | CCTC | 5 cut(s) | 55, 59, 97, 152, 157 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MseI | TTAA | 1 cut(s) | 390 |
| Mva1269I | GAATGC | 1 cut(s) | 101 |
| MvnI | CGCG | 1 cut(s) | 353 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NdeII | GATC | 2 cut(s) | 262, 369 |
| NlaIV | GGNNCC | 1 cut(s) | 168 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 231, 342 |
| PctI | GAATGC | 1 cut(s) | 101 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PkrI | GCNGC | 1 cut(s) | 26 |
| Ple19I | CGATCG | 1 cut(s) | 265 |
| PshAI | GACNNNNGTC | 1 cut(s) | 281 |
| PspFI | CCCAGC | 1 cut(s) | 286 |
| PspN4I | GGNNCC | 1 cut(s) | 168 |
| PspPI | GGNCC | 1 cut(s) | 198 |
| PvuI | CGATCG | 1 cut(s) | 265 |
| RgaI | GCGATCGC | 1 cut(s) | 265 |
| RsaI | GTAC | 2 cut(s) | 131, 399 |
| RsaNI | GTAC | 2 cut(s) | 130, 398 |
| SaqAI | TTAA | 1 cut(s) | 390 |
| SatI | GCNGC | 1 cut(s) | 25 |
| Sau3AI | GATC | 2 cut(s) | 262, 369 |
| Sau96I | GGNCC | 1 cut(s) | 198 |
| SduI | GDGCHC | 1 cut(s) | 231 |
| SetI | ASST | 9 cut(s) | 37, 47, 70, 131, 185, 307, 313, 339, 407 |
| SfaAI | GCGATCGC | 1 cut(s) | 265 |
| SgfI | GCGATCGC | 1 cut(s) | 265 |
| SmlI | CTYRAG | 3 cut(s) | 161, 210, 306 |
| SmoI | CTYRAG | 3 cut(s) | 161, 210, 306 |
| Sse9I | AATT | 3 cut(s) | 116, 137, 387 |
| SsiI | CCGC | 1 cut(s) | 353 |
| SspI | AATATT | 1 cut(s) | 255 |
| TaiI | ACGT | 1 cut(s) | 339 |
| TaqI | TCGA | 4 cut(s) | 234, 246, 368, 410 |
| TasI | AATT | 3 cut(s) | 116, 137, 387 |
| Tru1I | TTAA | 1 cut(s) | 390 |
| Tru9I | TTAA | 1 cut(s) | 390 |
| TseI | GCWGC | 1 cut(s) | 24 |
| TspGWI | ACGGA | 1 cut(s) | 271 |
| XapI | RAATTY | 2 cut(s) | 116, 137 |
| XmiI | GTMKAC | 1 cut(s) | 206 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |