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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 586 |
| AccI | GTMKAC | 2 cut(s) | 353, 576 |
| AccII | CGCG | 1 cut(s) | 65 |
| AciI | CCGC | 1 cut(s) | 188 |
| AcoI | YGGCCR | 1 cut(s) | 364 |
| AcsI | RAATTY | 1 cut(s) | 265 |
| AcuI | CTGAAG | 2 cut(s) | 465, 602 |
| AfaI | GTAC | 2 cut(s) | 198, 542 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 76, 586 |
| AflIII | ACRYGT | 1 cut(s) | 639 |
| AgsI | TTSAA | 8 cut(s) | 38, 89, 116, 181, 194, 308, 382, 565 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 374, 406, 416, 448 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 472, 504 |
| AluBI | AGCT | 4 cut(s) | 8, 233, 443, 516 |
| AluI | AGCT | 4 cut(s) | 8, 233, 443, 516 |
| Alw26I | GTCTC | 2 cut(s) | 24, 278 |
| AoxI | GGCC | 2 cut(s) | 364, 468 |
| ApoI | RAATTY | 1 cut(s) | 265 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 615 |
| AsuC2I | CCSGG | 1 cut(s) | 71 |
| AsuII | TTCGAA | 2 cut(s) | 422, 478 |
| BalI | TGGCCA | 1 cut(s) | 366 |
| BanII | GRGCYC | 1 cut(s) | 71 |
| BbsI | GAAGAC | 2 cut(s) | 389, 597 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 99, 133 |
| BcnI | CCSGG | 1 cut(s) | 71 |
| BcoDI | GTCTC | 2 cut(s) | 24, 278 |
| BfaI | CTAG | 3 cut(s) | 53, 165, 287 |
| BglII | AGATCT | 1 cut(s) | 499 |
| BmcAI | AGTACT | 1 cut(s) | 198 |
| Bme1390I | CCNGG | 1 cut(s) | 71 |
| BmrFI | CCNGG | 1 cut(s) | 71 |
| BmsI | GCATC | 1 cut(s) | 567 |
| BpiI | GAAGAC | 2 cut(s) | 389, 597 |
| BpmI | CTGGAG | 1 cut(s) | 47 |
| Bpu14I | TTCGAA | 2 cut(s) | 422, 478 |
| BpuMI | CCSGG | 1 cut(s) | 71 |
| Bsa29I | ATCGAT | 1 cut(s) | 119 |
| BsaI | GGTCTC | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 3 cut(s) | 159, 528, 580 |
| BsaWI | WCCGGW | 1 cut(s) | 311 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 76, 586 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| BseCI | ATCGAT | 1 cut(s) | 119 |
| BseDI | CCNNGG | 3 cut(s) | 159, 528, 580 |
| BseGI | GGATG | 1 cut(s) | 400 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 76, 586 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseRI | GAGGAG | 1 cut(s) | 12 |
| BseYI | CCCAGC | 1 cut(s) | 8 |
| Bsh1236I | CGCG | 1 cut(s) | 65 |
| BshFI | GGCC | 2 cut(s) | 366, 470 |
| BshVI | ATCGAT | 1 cut(s) | 119 |
| BsiSI | CCGG | 2 cut(s) | 71, 312 |
| BslFI | GGGAC | 1 cut(s) | 607 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 76, 586 |
| BsmAI | GTCTC | 2 cut(s) | 24, 278 |
| BsmFI | GGGAC | 1 cut(s) | 607 |
| BsnI | GGCC | 2 cut(s) | 366, 470 |
| Bso31I | GGTCTC | 1 cut(s) | 24 |
| Bsp119I | TTCGAA | 2 cut(s) | 422, 478 |
| Bsp1286I | GDGCHC | 1 cut(s) | 71 |
| Bsp143I | GATC | 3 cut(s) | 120, 358, 499 |
| BspACI | CCGC | 1 cut(s) | 188 |
| BspANI | GGCC | 2 cut(s) | 366, 470 |
| BspDI | ATCGAT | 1 cut(s) | 119 |
| BspFNI | CGCG | 1 cut(s) | 65 |
| BspT104I | TTCGAA | 2 cut(s) | 422, 478 |
| BspTNI | GGTCTC | 1 cut(s) | 24 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 3 cut(s) | 159, 528, 580 |
| BssMI | GATC | 3 cut(s) | 120, 358, 499 |
| BssT1I | CCWWGG | 1 cut(s) | 580 |
| Bst6I | CTCTTC | 1 cut(s) | 441 |
| BstBI | TTCGAA | 2 cut(s) | 422, 478 |
| BstC8I | GCNNGC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 400 |
| BstFNI | CGCG | 1 cut(s) | 65 |
| BstKTI | GATC | 3 cut(s) | 123, 361, 502 |
| BstMAI | GTCTC | 2 cut(s) | 24, 278 |
| BstMBI | GATC | 3 cut(s) | 120, 358, 499 |
| BstNSI | RCATGY | 1 cut(s) | 643 |
| BstSCI | CCNGG | 1 cut(s) | 69 |
| BstUI | CGCG | 1 cut(s) | 65 |
| BstV2I | GAAGAC | 2 cut(s) | 389, 597 |
| BstX2I | RGATCY | 1 cut(s) | 499 |
| BstYI | RGATCY | 1 cut(s) | 499 |
| Bsu15I | ATCGAT | 1 cut(s) | 119 |
| BsuRI | GGCC | 2 cut(s) | 366, 470 |
| BsuTUI | ATCGAT | 1 cut(s) | 119 |
| BtsCI | GGATG | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 1 cut(s) | 67 |
| ClaI | ATCGAT | 1 cut(s) | 119 |
| Csp6I | GTAC | 2 cut(s) | 197, 541 |
| CviAII | CATG | 2 cut(s) | 245, 640 |
| CviJI | RGCY | 9 cut(s) | 8, 69, 164, 209, 233, 366, 443, 470, 516 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 69, 164, 209, 233, 366, 443, 470, 516 |
| CviQI | GTAC | 2 cut(s) | 197, 541 |
| DpnI | GATC | 3 cut(s) | 122, 360, 501 |
| DpnII | GATC | 3 cut(s) | 120, 358, 499 |
| EaeI | YGGCCR | 1 cut(s) | 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 1 cut(s) | 441 |
| Eco130I | CCWWGG | 1 cut(s) | 580 |
| Eco24I | GRGCYC | 1 cut(s) | 71 |
| Eco31I | GGTCTC | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 2 cut(s) | 465, 602 |
| EcoT14I | CCWWGG | 1 cut(s) | 580 |
| EcoT22I | ATGCAT | 1 cut(s) | 560 |
| EcoT38I | GRGCYC | 1 cut(s) | 71 |
| ErhI | CCWWGG | 1 cut(s) | 580 |
| FaeI | CATG | 2 cut(s) | 248, 643 |
| FaiI | YATR | 8 cut(s) | 220, 237, 246, 336, 375, 513, 587, 641 |
| FaqI | GGGAC | 1 cut(s) | 607 |
| FatI | CATG | 2 cut(s) | 244, 639 |
| FblI | GTMKAC | 2 cut(s) | 353, 576 |
| FokI | GGATG | 1 cut(s) | 407 |
| FriOI | GRGCYC | 1 cut(s) | 71 |
| FspBI | CTAG | 3 cut(s) | 53, 165, 287 |
| GsaI | CCCAGC | 1 cut(s) | 12 |
| GsuI | CTGGAG | 1 cut(s) | 47 |
| HaeIII | GGCC | 2 cut(s) | 366, 470 |
| HapII | CCGG | 2 cut(s) | 71, 312 |
| Hin1II | CATG | 2 cut(s) | 248, 643 |
| HincII | GTYRAC | 1 cut(s) | 577 |
| HindII | GTYRAC | 1 cut(s) | 577 |
| HindIII | AAGCTT | 1 cut(s) | 231 |
| HinfI | GANTC | 2 cut(s) | 116, 419 |
| HpaII | CCGG | 2 cut(s) | 71, 312 |
| Hpy166II | GTNNAC | 2 cut(s) | 354, 577 |
| Hpy188I | TCNGA | 2 cut(s) | 125, 637 |
| Hpy188III | TCNNGA | 3 cut(s) | 26, 44, 562 |
| Hpy8I | GTNNAC | 2 cut(s) | 354, 577 |
| HpyAV | CCTTC | 3 cut(s) | 100, 396, 635 |
| HpyCH4V | TGCA | 2 cut(s) | 263, 558 |
| Hsp92II | CATG | 2 cut(s) | 248, 643 |
| Kzo9I | GATC | 3 cut(s) | 120, 358, 499 |
| LmnI | GCTCC | 1 cut(s) | 149 |
| LpnPI | CCDG | 5 cut(s) | 11, 84, 295, 325, 362 |
| LweI | GCATC | 1 cut(s) | 567 |
| MaeI | CTAG | 3 cut(s) | 53, 165, 287 |
| MaeIII | GTNAC | 2 cut(s) | 30, 154 |
| MalI | GATC | 3 cut(s) | 122, 360, 501 |
| MboI | GATC | 3 cut(s) | 120, 358, 499 |
| MboII | GAAGA | 5 cut(s) | 394, 458, 562, 602, 608 |
| MflI | RGATCY | 1 cut(s) | 499 |
| MhlI | GDGCHC | 1 cut(s) | 71 |
| MlsI | TGGCCA | 1 cut(s) | 366 |
| MluCI | AATT | 4 cut(s) | 38, 128, 265, 431 |
| MluNI | TGGCCA | 1 cut(s) | 366 |
| MnlI | CCTC | 8 cut(s) | 33, 70, 154, 178, 481, 501, 538, 643 |
| Mox20I | TGGCCA | 1 cut(s) | 366 |
| Mph1103I | ATGCAT | 1 cut(s) | 560 |
| MroXI | GAANNNNTTC | 1 cut(s) | 615 |
| MscI | TGGCCA | 1 cut(s) | 366 |
| MseI | TTAA | 1 cut(s) | 606 |
| Msp20I | TGGCCA | 1 cut(s) | 366 |
| MspA1I | CMGCKG | 1 cut(s) | 8 |
| MspI | CCGG | 2 cut(s) | 71, 312 |
| MspR9I | CCNGG | 1 cut(s) | 71 |
| MvnI | CGCG | 1 cut(s) | 65 |
| NciI | CCSGG | 1 cut(s) | 71 |
| NdeII | GATC | 3 cut(s) | 120, 358, 499 |
| NlaIII | CATG | 2 cut(s) | 248, 643 |
| NsiI | ATGCAT | 1 cut(s) | 560 |
| NspI | RCATGY | 1 cut(s) | 643 |
| NspV | TTCGAA | 2 cut(s) | 422, 478 |
| PciI | ACATGT | 1 cut(s) | 639 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 536 |
| PdmI | GAANNNNTTC | 1 cut(s) | 615 |
| PfeI | GAWTC | 2 cut(s) | 116, 419 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 586 |
| PscI | ACATGT | 1 cut(s) | 639 |
| PspFI | CCCAGC | 1 cut(s) | 8 |
| PsuI | RGATCY | 1 cut(s) | 499 |
| PvuII | CAGCTG | 1 cut(s) | 8 |
| RsaI | GTAC | 2 cut(s) | 198, 542 |
| RsaNI | GTAC | 2 cut(s) | 197, 541 |
| SalI | GTCGAC | 1 cut(s) | 575 |
| SaqAI | TTAA | 1 cut(s) | 606 |
| Sau3AI | GATC | 3 cut(s) | 120, 358, 499 |
| ScaI | AGTACT | 1 cut(s) | 198 |
| ScrFI | CCNGG | 1 cut(s) | 71 |
| SduI | GDGCHC | 1 cut(s) | 71 |
| SetI | ASST | 8 cut(s) | 10, 235, 445, 512, 518, 576, 586, 606 |
| SfaNI | GCATC | 1 cut(s) | 567 |
| SfuI | TTCGAA | 2 cut(s) | 422, 478 |
| Sse9I | AATT | 4 cut(s) | 38, 128, 265, 431 |
| SsiI | CCGC | 1 cut(s) | 188 |
| SspMI | CTAG | 3 cut(s) | 53, 165, 287 |
| StyD4I | CCNGG | 1 cut(s) | 69 |
| StyI | CCWWGG | 1 cut(s) | 580 |
| TaqI | TCGA | 6 cut(s) | 45, 119, 422, 438, 478, 576 |
| TaqII | GACCGA | 1 cut(s) | 520 |
| TasI | AATT | 4 cut(s) | 38, 128, 265, 431 |
| TatI | WGTACW | 1 cut(s) | 196 |
| TfiI | GAWTC | 2 cut(s) | 116, 419 |
| Tru1I | TTAA | 1 cut(s) | 606 |
| Tru9I | TTAA | 1 cut(s) | 606 |
| TspDTI | ATGAA | 3 cut(s) | 233, 252, 362 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 586 |
| XapI | RAATTY | 1 cut(s) | 265 |
| XceI | RCATGY | 1 cut(s) | 643 |
| XmiI | GTMKAC | 2 cut(s) | 353, 576 |
| XmnI | GAANNNNTTC | 1 cut(s) | 615 |
| XspI | CTAG | 3 cut(s) | 53, 165, 287 |
| ZrmI | AGTACT | 1 cut(s) | 198 |
| Zsp2I | ATGCAT | 1 cut(s) | 560 |