Rh4AG084400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000063
Physical Location & Seq
Forward (+)
17646418 .. 17648312
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG084400.1

Sequence Viewer

Length: 1473 bp
ATGCCCCTAGCTCTTGGACCATTTGTTCTAGCTCGCCTCTACCGTACTCTGCGCAATGTGGTGGTTGATAATATGAATTTAGACATCGGAGGACCATTATGGATGTTCCAAGTGTGGGTACAAACCTATTTTCATCAGCTTCGGCCACCATGCCCTCCATTTGTCCCTACCATGACGCTTGGCCGTCAGATTATACCCCTCGGCATTCATTCACATTCGGCCACGGAGTGCTTTGGTTTCTTCTTTTCAAAGAAAGGCATGTCCAGGGATGAGTTTGCCATATGTTACAGCCGAGATCACCCTTCTTGTCTTGCGATTGACATATCAACATTATGGGAGAAGAAATTGGACTTGGATGTGATTCTATCTTGGGGAAGCATTCTGATTTCTCGGGACTTGAACTATGGCCTCAAAGGTACAGTGGGTCGGTATGGTGTTGAGGTTTATCTTCCCAATTTCGTTGCACGTCAGCTTGGCTTCATACAGAGTTGTCCGGCCTTATTTTTGATGTCAAGAAACCACTTCTCGTCATGGAGAGATGGGTTCACACGAACTTCTCAGTGTTCGGCCGTTGGTAAGTACTATGAGGAGCAATTTGGCAAGTTTGAAAGGTCCGGCCTAAGGCCTCGTTGTCCTGATCATAGAGCCACCCCACACTTCCAAACATGGTGGTCAACTTTTATCATGAAAAATCTTGGAAAGGACTTGGCTGGGACCCAACGCGCTGCATTACAAGGACTTCTAAACTTGCTAGGCCCCAATGAAGGTAATGGTAAGCAGAAAGCACTGGATGGCAAATCAAAATCAACCAAAGGATCCTCTAAACAAGGACAAACATCGAAGAAACGTGGCTCAACATTGGGGTATACTCGAAACGCCAAGAAAACAAAGAAATCATTCGATGTGGTGGAGAATTCAGTCACAAACCCGACAGACACTGTGGTTAGTGAGGACATATTTTTTGAGGCTAATATGGATGATGGCCATGATGCTTTGGCTGACAACCAAAATACGTTTGAAATTGAGGATATGGCTGAAACTGGTGACGCCTCGATCAATAGCGCGGACTCGGCTGATAGCGAAGGTTATTCGGAAGAAGCTCAATCAGAAAGTGACGATCAAGAGAGAGATGGCCGCATTGATCATTCTTTGCCCCCACTTGAAAACTCCATGATTGAGATTGACATGGACGACTTGGGTGAGAGCCAACTGCACAACACATCGAGCATCGGCCAACAGCTTGCCATATCAAACAACTTTTCCAAGGATGTTGAAAACACAAATGCACGTGGTCGAGAAACACTACTTATCCATCAGACATTGGTTCAGGTGGGAGAATCGGCTCTTCTCAACCAAACTGAACCACATCCTCCTATGTTCGGAACACTTACCTCTCCTCCTAATGACGGGATGTGTCCAATTGAGCAAGCTATCGTTTGCGCTCCATCTTCGGCCGAGCTTGTGCCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase cNMP_binding

Protein Analysis

490

Amino Acids

54.38

Weight (kDa)

5.38

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 3 - 49 5.7e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
AccI GTMKAC 1 cut(s) 866
AccII CGCG 2 cut(s) 723, 1064
AciI CCGC 2 cut(s) 1064, 1135
AclWI GGATC 2 cut(s) 810, 823
AcoI YGGCCR 8 cut(s) 143, 181, 219, 567, 982, 1132, 1231, 1452
AcsI RAATTY 2 cut(s) 76, 913
AcvI CACGTG 1 cut(s) 1289
AcyI GRCGYC 1 cut(s) 1047
AdeI CACNNNGTG 1 cut(s) 228
AfaI GTAC 4 cut(s) 46, 120, 418, 581
AfiI CCNNNNNNNGG 5 cut(s) 115, 621, 764, 1379, 1406
AgsI TTSAA 6 cut(s) 249, 400, 608, 1019, 1163, 1274
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 263
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 8 cut(s) 11, 32, 139, 472, 1100, 1240, 1430, 1459
AluI AGCT 8 cut(s) 11, 32, 139, 472, 1100, 1240, 1430, 1459
AlwI GGATC 2 cut(s) 810, 823
AlwNI CAGNNNCTG 1 cut(s) 938
Ama87I CYCGRG 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 76, 913
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
Asp700I GAANNNNTTC 1 cut(s) 896
AspLEI GCGC 4 cut(s) 54, 725, 1064, 1442
AspS9I GGNCC 5 cut(s) 17, 92, 612, 714, 755
AsuHPI GGTGA 3 cut(s) 290, 1055, 1211
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 4 cut(s) 17, 92, 612, 714
AxyI CCTNAGG 1 cut(s) 620
BalI TGGCCA 1 cut(s) 984
BamHI GGATCC 1 cut(s) 815
BbrPI CACGTG 1 cut(s) 1289
BbvI GCAGC 1 cut(s) 712
BccI CCATC 6 cut(s) 533, 785, 974, 1124, 1320, 1453
BceAI ACGGC 2 cut(s) 168, 554
BciT130I CCWGG 1 cut(s) 265
BclI TGATCA 2 cut(s) 637, 1141
BfaI CTAG 3 cut(s) 8, 29, 752
BisI GCNGC 2 cut(s) 726, 1135
BlsI GCNGC 2 cut(s) 727, 1136
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 4 cut(s) 17, 92, 612, 714
BmeT110I CYCGRG 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 5 cut(s) 17, 92, 612, 714, 755
BmiI GGNNCC 4 cut(s) 715, 716, 757, 817
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 2 cut(s) 979, 1236
BsaAI YACGTR 1 cut(s) 1289
BsaHI GRCGYC 1 cut(s) 1047
BsaJI CCNNGG 4 cut(s) 199, 222, 264, 1263
BsaXI ACNNNNNCTCC 2 cut(s) 1381, 1411
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 621, 764, 1379, 1406
Bse1I ACTGG 2 cut(s) 792, 1045
Bse21I CCTNAGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 4 cut(s) 199, 222, 264, 1263
BseGI GGATG 8 cut(s) 108, 274, 361, 796, 982, 1273, 1366, 1416
BseLI CCNNNNNNNGG 5 cut(s) 115, 621, 764, 1379, 1406
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 2 cut(s) 792, 1045
BseRI GAGGAG 2 cut(s) 602, 1386
BseX3I CGGCCG 2 cut(s) 567, 1452
BseXI GCAGC 1 cut(s) 712
BseYI CCCAGC 1 cut(s) 710
BsgI GTGCAG 1 cut(s) 1196
Bsh1236I CGCG 2 cut(s) 723, 1064
Bsh1285I CGRYCG 2 cut(s) 570, 1455
BsiEI CGRYCG 2 cut(s) 570, 1455
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 2 cut(s) 494, 615
BslFI GGGAC 3 cut(s) 149, 407, 727
BslI CCNNNNNNNGG 5 cut(s) 115, 621, 764, 1379, 1406
BsmFI GGGAC 3 cut(s) 149, 407, 727
BsmI GAATGC 2 cut(s) 204, 378
BsoBI CYCGRG 1 cut(s) 390
Bsp143I GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
BspACI CCGC 2 cut(s) 1064, 1135
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 2 cut(s) 723, 1064
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 4 cut(s) 715, 716, 757, 817
BspPI GGATC 2 cut(s) 810, 823
BspQI GCTCTTC 1 cut(s) 1350
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 792, 1045
BssECI CCNNGG 4 cut(s) 199, 222, 264, 1263
BssMI GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
BssNAI GTATAC 1 cut(s) 867
BssNI GRCGYC 1 cut(s) 1047
BssT1I CCWWGG 1 cut(s) 1263
Bst1107I GTATAC 1 cut(s) 867
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 44, 421, 940
Bst6I CTCTTC 1 cut(s) 1350
BstACI GRCGYC 1 cut(s) 1047
BstBAI YACGTR 1 cut(s) 1289
BstC8I GCNNGC 3 cut(s) 34, 1242, 1428
BstDEI CTNAG 2 cut(s) 558, 620
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 8 cut(s) 108, 274, 361, 796, 982, 1273, 1366, 1416
BstFNI CGCG 2 cut(s) 723, 1064
BstHHI GCGC 4 cut(s) 54, 725, 1064, 1442
BstKTI GATC 6 cut(s) 298, 640, 818, 1056, 1120, 1144
BstMBI GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
BstMCI CGRYCG 2 cut(s) 570, 1455
BstMWI GCNNNNNNNGC 1 cut(s) 1070
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 263
BstUI CGCG 2 cut(s) 723, 1064
BstV1I GCAGC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 815
BstYI RGATCY 1 cut(s) 815
BstZ17I GTATAC 1 cut(s) 867
BstZI CGGCCG 2 cut(s) 567, 1452
Bsu36I CCTNAGG 1 cut(s) 620
BtgI CCRYGG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 8 cut(s) 108, 274, 361, 796, 982, 1273, 1366, 1416
BtsIMutI CAGTG 4 cut(s) 426, 566, 785, 936
Cac8I GCNNGC 3 cut(s) 34, 1242, 1428
CaiI CAGNNNCTG 1 cut(s) 938
CciI TCATGA 1 cut(s) 684
CfoI GCGC 4 cut(s) 54, 725, 1064, 1442
Cfr13I GGNCC 5 cut(s) 17, 92, 612, 714, 755
CseI GACGC 2 cut(s) 184, 1055
Csp6I GTAC 4 cut(s) 45, 119, 417, 580
CspCI CAANNNNNGTGG 2 cut(s) 650, 685
CviAII CATG 9 cut(s) 150, 172, 259, 531, 666, 685, 986, 1171, 1186
CviQI GTAC 4 cut(s) 45, 119, 417, 580
DdeI CTNAG 2 cut(s) 558, 620
DpnI GATC 6 cut(s) 297, 639, 817, 1055, 1119, 1143
DpnII GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
DraIII CACNNNGTG 1 cut(s) 228
EaeI YGGCCR 8 cut(s) 143, 181, 219, 567, 982, 1132, 1231, 1452
EagI CGGCCG 2 cut(s) 567, 1452
Eam1104I CTCTTC 1 cut(s) 1350
EarI CTCTTC 1 cut(s) 1350
EclXI CGGCCG 2 cut(s) 567, 1452
Eco130I CCWWGG 1 cut(s) 1263
Eco147I AGGCCT 1 cut(s) 625
Eco47I GGWCC 4 cut(s) 17, 92, 612, 714
Eco52I CGGCCG 2 cut(s) 567, 1452
Eco72I CACGTG 1 cut(s) 1289
Eco81I CCTNAGG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 390
EcoO109I RGGNCCY 2 cut(s) 714, 755
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 1263
ErhI CCWWGG 1 cut(s) 1263
FaeI CATG 9 cut(s) 153, 175, 262, 534, 669, 688, 989, 1174, 1189
FaqI GGGAC 3 cut(s) 149, 407, 727
FatI CATG 9 cut(s) 149, 171, 258, 530, 665, 684, 985, 1170, 1185
FauNDI CATATG 1 cut(s) 281
FbaI TGATCA 2 cut(s) 637, 1141
FblI GTMKAC 1 cut(s) 866
Fnu4HI GCNGC 2 cut(s) 726, 1135
FokI GGATG 8 cut(s) 115, 281, 368, 803, 989, 1280, 1353, 1423
Fsp4HI GCNGC 2 cut(s) 726, 1135
FspBI CTAG 3 cut(s) 8, 29, 752
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 4 cut(s) 53, 724, 1063, 1441
GluI GCNGC 2 cut(s) 726, 1135
GsaI CCCAGC 1 cut(s) 714
HapII CCGG 2 cut(s) 494, 615
HgaI GACGC 2 cut(s) 184, 1055
HhaI GCGC 4 cut(s) 54, 725, 1064, 1442
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 9 cut(s) 153, 175, 262, 534, 669, 688, 989, 1174, 1189
Hin6I GCGC 4 cut(s) 52, 723, 1062, 1440
HinP1I GCGC 4 cut(s) 52, 723, 1062, 1440
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HinfI GANTC 3 cut(s) 361, 1067, 1337
HpaII CCGG 2 cut(s) 494, 615
HphI GGTGA 3 cut(s) 290, 1055, 1211
Hpy166II GTNNAC 3 cut(s) 546, 675, 867
Hpy188I TCNGA 7 cut(s) 89, 189, 384, 1093, 1108, 1317, 1382
Hpy188III TCNNGA 6 cut(s) 392, 513, 635, 685, 1121, 1295
Hpy8I GTNNAC 3 cut(s) 546, 675, 867
HpyAV CCTTC 3 cut(s) 312, 758, 1076
HpyCH4III ACNGT 3 cut(s) 44, 421, 940
HpyCH4IV ACGT 4 cut(s) 466, 847, 1013, 1288
HpyCH4V TGCA 4 cut(s) 464, 728, 1213, 1286
HpyF10VI GCNNNNNNNGC 1 cut(s) 1070
HpyF3I CTNAG 2 cut(s) 558, 620
HpySE526I ACGT 4 cut(s) 466, 847, 1013, 1288
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 9 cut(s) 153, 175, 262, 534, 669, 688, 989, 1174, 1189
HspAI GCGC 4 cut(s) 52, 723, 1062, 1440
KflI GGGWCCC 1 cut(s) 714
Ksp22I TGATCA 2 cut(s) 637, 1141
Kzo9I GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
LguI GCTCTTC 1 cut(s) 1350
LmnI GCTCC 2 cut(s) 589, 1447
LpnPI CCDG 9 cut(s) 250, 277, 507, 628, 648, 696, 773, 1026, 1313
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 2 cut(s) 979, 1236
MaeI CTAG 3 cut(s) 8, 29, 752
MaeII ACGT 4 cut(s) 466, 847, 1013, 1288
MaeIII GTNAC 4 cut(s) 284, 919, 1043, 1112
MalI GATC 6 cut(s) 297, 639, 817, 1055, 1119, 1143
MboI GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
MboII GAAGA 7 cut(s) 232, 352, 440, 853, 1106, 1337, 1440
MfeI CAATTG 1 cut(s) 1419
MflI RGATCY 1 cut(s) 815
MlsI TGGCCA 1 cut(s) 984
MluCI AATT 8 cut(s) 76, 344, 454, 593, 913, 1020, 1419, 1468
MluNI TGGCCA 1 cut(s) 984
MlyI GAGTC 1 cut(s) 1061
Mox20I TGGCCA 1 cut(s) 984
MroXI GAANNNNTTC 1 cut(s) 896
MscI TGGCCA 1 cut(s) 984
MseI TTAA 1 cut(s) 1471
Msp20I TGGCCA 1 cut(s) 984
MspI CCGG 2 cut(s) 494, 615
MspR9I CCNGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 1419
Mva1269I GAATGC 2 cut(s) 204, 378
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 2 cut(s) 723, 1064
MwoI GCNNNNNNNGC 1 cut(s) 1070
NdeI CATATG 1 cut(s) 281
NdeII GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
NlaIII CATG 9 cut(s) 153, 175, 262, 534, 669, 688, 989, 1174, 1189
NlaIV GGNNCC 4 cut(s) 715, 716, 757, 817
NmeAIII GCCGAG 3 cut(s) 180, 317, 1049
NmuCI GTSAC 3 cut(s) 919, 1043, 1112
NsbI TGCGCA 1 cut(s) 53
NspI RCATGY 1 cut(s) 262
PagI TCATGA 1 cut(s) 684
PceI AGGCCT 1 cut(s) 625
PciSI GCTCTTC 1 cut(s) 1350
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 2 cut(s) 204, 378
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 2 cut(s) 361, 1337
PkrI GCNGC 2 cut(s) 727, 1136
PleI GAGTC 1 cut(s) 1061
PmaCI CACGTG 1 cut(s) 1289
PmlI CACGTG 1 cut(s) 1289
PpsI GAGTC 1 cut(s) 1061
Ppu21I YACGTR 1 cut(s) 1289
PpuMI RGGWCCY 1 cut(s) 714
Psp5II RGGWCCY 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 263
PspCI CACGTG 1 cut(s) 1289
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 4 cut(s) 715, 716, 757, 817
PspPI GGNCC 5 cut(s) 17, 92, 612, 714, 755
PspPPI RGGWCCY 1 cut(s) 714
PstNI CAGNNNCTG 1 cut(s) 938
PsuI RGATCY 1 cut(s) 815
RsaI GTAC 4 cut(s) 46, 120, 418, 581
RsaNI GTAC 4 cut(s) 45, 119, 417, 580
SapI GCTCTTC 1 cut(s) 1350
SaqAI TTAA 1 cut(s) 1471
SatI GCNGC 2 cut(s) 726, 1135
Sau3AI GATC 6 cut(s) 295, 637, 815, 1053, 1117, 1141
Sau96I GGNCC 5 cut(s) 17, 92, 612, 714, 755
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 1061
ScrFI CCNGG 1 cut(s) 265
SfaNI GCATC 2 cut(s) 979, 1236
SinI GGWCC 4 cut(s) 17, 92, 612, 714
Sse9I AATT 8 cut(s) 76, 344, 454, 593, 913, 1020, 1419, 1468
SseBI AGGCCT 1 cut(s) 625
SsiI CCGC 2 cut(s) 1064, 1135
SspMI CTAG 3 cut(s) 8, 29, 752
StuI AGGCCT 1 cut(s) 625
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 1263
TaaI ACNGT 3 cut(s) 44, 421, 940
TaiI ACGT 4 cut(s) 469, 850, 1016, 1291
TaqI TCGA 6 cut(s) 839, 871, 900, 1052, 1223, 1294
TasI AATT 8 cut(s) 76, 344, 454, 593, 913, 1020, 1419, 1468
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 1137
TfiI GAWTC 2 cut(s) 361, 1337
Tru1I TTAA 1 cut(s) 1471
Tru9I TTAA 1 cut(s) 1471
TscAI CASTG 4 cut(s) 426, 566, 792, 943
TseFI GTSAC 3 cut(s) 919, 1043, 1112
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 3 cut(s) 919, 1043, 1112
TspDTI ATGAA 6 cut(s) 89, 122, 197, 469, 701, 777
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 4 cut(s) 426, 566, 792, 943
VpaK11BI GGWCC 4 cut(s) 17, 92, 612, 714
XapI RAATTY 2 cut(s) 76, 913
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 866
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 3 cut(s) 8, 29, 752
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.