Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001909.1

Orthogroup ID

OG0000063

Physical Location & Seq

Genomic Coordinates Reverse (-)

53709 .. 56605

Gene Structure 2897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001909.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

atgcgaagtggagaaattcacaaattagcggggcaaattccaccaagcctttacttaggccctcactttcctgatggtactcctccaatcatcacaagagtcctttacaaatatcaatcagatcactctagtcactttgtccaacatgattggtcttcctgggcttgttcccggcctgaaggttggccgaccctcacggaagaatggaaagcatgggtgccaagaatggagtttttctatgctgacgcttggcggaaacttggcatttatgatgctattaagctcacggagcaagacatagtcattgagaagcccatactagcagcggctttatgtttttggtcatcagccacgaacaccatgaacttgccgctgggtcctatgagtcctacaattatggatatgtgcactatctttggtctgcggcctgttggagttgaaatcagtgcgaatcacaatttgtcaactgcttttagagatagcctgcaagctccaaaattcaaggataacgatgcacaagctcaagctacgaataagtccaaaaggtcacacaactatagtaccttgtacaagcactatgctttgctaggtagagaaccagtcaaggaaaacgagcatacaacgtttctatattattggctatgcaagtatgtgttctgctgcaaagctcgacaatgtcctcttgattttgcaatactagccgaggcattagcttcgggcatccagttagctcttggcccatttgtccttgcatacttgtacaggtgtctgcataaaattgtgactaatgacatggatcccaacactggtggaccactctggatgttccaactctggttgcgggcctattttcctcaaatgtcaacagccgcacctgaatttgactataagatgtcgtatgggcggcatcttatggctacagcatcatctcatatgtcagtggagaagtgttttaccatgttctacaccctcaaacactttaaaaactttcatgtttgctacaccaaatggaaggtagccttttttgcagacaacgaagaatcagatcagtacttgtccgatgatgattggaaaggaacctggggtagtttcctaatctcaagagatttgcactacggcctaacacttagccgttattctaagcccggggtagaagtctatcttcccaattattttgctcgtcaatttggcttccttcagagttgtcctgttcttttaaacaacttattgaatcatctatgttcatggcgccaacagctcaggacgcaggatatgtgtgactcagtctcacgacgttaccaagaacgtctcagccgtttcaaaatggagccttaccaaacgagttgcacggctacacctcctttcgttaattggtggtcagattactcaaagaaattcgttgacccagatttaaaggaactgttcacacagcggattgtccaaggagttggtgatatcttgaagagccaagatgggaggaaaagaaagcggactacgactgatggtcgcaaagaaactccaaccttagcacaacagagttcatctttttctgaagaatattctcttgcgggcttggataacaatagcggccatactattgaattaactattgatgatgagcaggctgaaacttttgctaatggtgaggaccacgctttaattgatgaatcagttcattctttccctgacaatcgtgaggcaacctcttctagacccttgttgtctgcagaggccttagccttcttagacgagcttgctatgccaccaaagatgacaccaaaacagattggcaatgatcgagagaagatggcggccgagtttgtaactgcatgttgccgcaaaccccttttgaccgtggttgacaacaatctttacgaccgcttcaaacaagaaacaaaattcttgatttcggtcaatcattttagtcccgaccgtgtgcaacaaattgaagatcatctcaaagttacagatgtcagtgtagttgcctatacacatgctttggaaaaatgggacactggccgcgctctagaaaagaaatatggacctattgtggatcgtcaatcttcaagggccgcgaaactcacccaactccatgatgagttcaacaaagatgcacaagagttagctgagctagagagtcgagtgaatgtgatccgggagcgcatgtccacggcttcaaacgttataaaccaagagtataaagaacatcatgaagagctcaagttgttttccatgcatggtagggacacccaagccttttcagaaatcaagcatgatcttgatgaccaagagtataaagaacatcatgaagagctcaagttgttttccatgcatggtagggacacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

782

Amino Acids

90.28

Weight (kDa)

6.22

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica	MD05G1017000.v1.1
prunus_persica	Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis	pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis	RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata	RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora	Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii	Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa	Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha	Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana	Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2186
AccB1I	GGYRCC	2 cut(s)	217, 1248
AccII	CGCG	2 cut(s)	2022, 2075
AclI	AACGTT	2 cut(s)	623, 2181
AclWI	GGATC	4 cut(s)	791, 804, 2061, 2146
AcoI	YGGCCR	4 cut(s)	185, 1588, 1812, 2017
AcsI	RAATTY	6 cut(s)	15, 36, 497, 878, 1394, 1898
AcuI	CTGAAG	3 cut(s)	198, 1181, 1572
AcyI	GRCGYC	1 cut(s)	1249
AfaI	GTAC	5 cut(s)	79, 562, 569, 761, 1052
AfiI	CCNNNNNNNGG	1 cut(s)	806
AhdI	GACNNNNNGTC	1 cut(s)	1503
AjnI	CCWGG	2 cut(s)	158, 1079
Alw21I	GWGCWC	3 cut(s)	410, 2220, 2316
Alw26I	GTCTC	2 cut(s)	1291, 1313
Alw44I	GTGCAC	1 cut(s)	406
AlwI	GGATC	4 cut(s)	791, 804, 2061, 2146
Ama87I	CYCGRG	1 cut(s)	1145
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	323, 660
ApoI	RAATTY	6 cut(s)	15, 36, 497, 878, 1394, 1898
Asp700I	GAANNNNTTC	1 cut(s)	1671
AspLEI	GCGC	3 cut(s)	1251, 2024, 2163
AspS9I	GGNCC	8 cut(s)	59, 377, 737, 812, 843, 1648, 2042, 2070
AsuC2I	CCSGG	4 cut(s)	172, 1146, 1147, 2156
AsuHPI	GGTGA	3 cut(s)	1463, 1655, 2074
AvaI	CYCGRG	1 cut(s)	1145
AvaII	GGWCC	4 cut(s)	377, 812, 1648, 2042
BaeGI	GKGCMC	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	544, 577
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	2 cut(s)	217, 1248
BanII	GRGCYC	2 cut(s)	2220, 2316
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	3 cut(s)	410, 2220, 2316
BbvI	GCAGC	2 cut(s)	335, 647
BccI	CCATC	4 cut(s)	68, 1466, 1496, 1801
BceAI	ACGGC	5 cut(s)	1116, 1132, 1299, 1365, 2187
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	2 cut(s)	160, 1081
BcnI	CCSGG	4 cut(s)	172, 1146, 1147, 2156
BcoDI	GTCTC	2 cut(s)	1291, 1313
BfaI	CTAG	7 cut(s)	129, 320, 587, 698, 1710, 2027, 2132
BfmI	CTRYAG	3 cut(s)	556, 918, 1725
BfoI	RGCGCY	1 cut(s)	1252
BlpI	GCTNAGC	1 cut(s)	2127
BmcAI	AGTACT	1 cut(s)	1052
Bme1390I	CCNGG	6 cut(s)	160, 172, 1081, 1146, 1147, 2156
Bme18I	GGWCC	4 cut(s)	377, 812, 1648, 2042
BmeRI	GACNNNNNGTC	1 cut(s)	1503
BmeT110I	CYCGRG	1 cut(s)	1145
BmgT120I	GGNCC	8 cut(s)	59, 377, 737, 812, 843, 1648, 2042, 2070
BmiI	GGNNCC	6 cut(s)	219, 378, 798, 1078, 1250, 1329
BmrFI	CCNGG	6 cut(s)	160, 172, 1081, 1146, 1147, 2156
BmsI	GCATC	6 cut(s)	262, 502, 729, 916, 932, 2101
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	1688, 1720
Bpu10I	CCTNAGC	3 cut(s)	1259, 1525, 1735
Bpu1102I	GCTNAGC	1 cut(s)	2127
BpuEI	CTTGAG	4 cut(s)	507, 1084, 2204, 2300
BpuMI	CCSGG	4 cut(s)	172, 1146, 1147, 2156
BsaHI	GRCGYC	1 cut(s)	1249
BsaJI	CCNNGG	8 cut(s)	159, 702, 1080, 1145, 1146, 1441, 1854, 2169
BsaXI	ACNNNNNCTCC	2 cut(s)	2150, 2180
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse1I	ACTGG	4 cut(s)	599, 724, 811, 2020
Bse3DI	GCAATG	1 cut(s)	1798
BseBI	CCWGG	2 cut(s)	160, 1081
BseDI	CCNNGG	8 cut(s)	159, 702, 1080, 1145, 1146, 1441, 1854, 2169
BseGI	GGATG	2 cut(s)	720, 828
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	1 cut(s)	1798
BseMII	CTCAG	4 cut(s)	1273, 1296, 1324, 2118
BseNI	ACTGG	4 cut(s)	599, 724, 811, 2020
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	410
BseX3I	CGGCCG	1 cut(s)	1812
BseXI	GCAGC	2 cut(s)	335, 647
BseYI	CCCAGC	1 cut(s)	373
Bsh1236I	CGCG	2 cut(s)	2022, 2075
Bsh1285I	CGRYCG	3 cut(s)	1815, 1879, 1933
BshNI	GGYRCC	2 cut(s)	217, 1248
BsiEI	CGRYCG	3 cut(s)	1815, 1879, 1933
BsiHKAI	GWGCWC	3 cut(s)	410, 2220, 2316
BsiHKCI	CYCGRG	1 cut(s)	1145
BsiSI	CCGG	3 cut(s)	172, 1146, 2155
BslFI	GGGAC	3 cut(s)	1911, 2024, 2258
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	2 cut(s)	1291, 1313
BsmBI	CGTCTC	1 cut(s)	1313
BsmFI	GGGAC	3 cut(s)	1911, 2024, 2258
BsoBI	CYCGRG	1 cut(s)	1145
Bsp1286I	GDGCHC	3 cut(s)	410, 2220, 2316
Bsp1407I	TGTACA	2 cut(s)	567, 759
Bsp143I	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
Bsp1720I	GCTNAGC	1 cut(s)	2127
BspCNI	CTCAG	4 cut(s)	1272, 1295, 1323, 2119
BspFNI	CGCG	2 cut(s)	2022, 2075
BspHI	TCATGA	2 cut(s)	2209, 2305
BspLI	GGNNCC	6 cut(s)	219, 378, 798, 1078, 1250, 1329
BspMAI	CTGCAG	1 cut(s)	1729
BspPI	GGATC	4 cut(s)	791, 804, 2061, 2146
BspQI	GCTCTTC	3 cut(s)	1457, 2208, 2304
BspT107I	GGYRCC	2 cut(s)	217, 1248
BsrDI	GCAATG	1 cut(s)	1798
BsrGI	TGTACA	2 cut(s)	567, 759
BsrI	ACTGG	4 cut(s)	599, 724, 811, 2020
BssECI	CCNNGG	8 cut(s)	159, 702, 1080, 1145, 1146, 1441, 1854, 2169
BssMI	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
BssNI	GRCGYC	1 cut(s)	1249
BssT1I	CCWWGG	1 cut(s)	1441
Bst2UI	CCWGG	2 cut(s)	160, 1081
Bst4CI	ACNGT	3 cut(s)	1422, 1855, 1934
Bst6I	CTCTTC	4 cut(s)	1457, 1711, 2208, 2304
BstACI	GRCGYC	1 cut(s)	1249
BstAUI	TGTACA	2 cut(s)	567, 759
BstC8I	GCNNGC	6 cut(s)	485, 489, 843, 1570, 1623, 1755
BstDSI	CCRYGG	2 cut(s)	1854, 2169
BstF5I	GGATG	2 cut(s)	720, 828
BstFNI	CGCG	2 cut(s)	2022, 2075
BstH2I	RGCGCY	1 cut(s)	1252
BstHHI	GCGC	3 cut(s)	1251, 2024, 2163
BstKTI	GATC	8 cut(s)	124, 799, 1048, 1798, 1954, 2056, 2154, 2278
BstMAI	GTCTC	2 cut(s)	1291, 1313
BstMBI	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
BstMCI	CGRYCG	3 cut(s)	1815, 1879, 1933
BstMWI	GCNNNNNNNGC	6 cut(s)	289, 698, 1025, 1255, 1264, 1759
BstNI	CCWGG	2 cut(s)	160, 1081
BstNSI	RCATGY	3 cut(s)	1833, 1997, 2167
BstSCI	CCNGG	6 cut(s)	158, 170, 1079, 1144, 1145, 2154
BstSFI	CTRYAG	3 cut(s)	556, 918, 1725
BstSLI	GKGCMC	1 cut(s)	410
BstUI	CGCG	2 cut(s)	2022, 2075
BstV1I	GCAGC	2 cut(s)	335, 647
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	1448
BstYI	RGATCY	1 cut(s)	796
BstZI	CGGCCG	1 cut(s)	1812
BtgI	CCRYGG	2 cut(s)	1854, 2169
BtsCI	GGATG	2 cut(s)	720, 828
BtsIMutI	CAGTG	5 cut(s)	451, 804, 945, 1981, 2013
Cac8I	GCNNGC	6 cut(s)	485, 489, 843, 1570, 1623, 1755
CciI	TCATGA	2 cut(s)	2209, 2305
CfoI	GCGC	3 cut(s)	1251, 2024, 2163
Cfr13I	GGNCC	8 cut(s)	59, 377, 737, 812, 843, 1648, 2042, 2070
Cfr9I	CCCGGG	1 cut(s)	1145
CseI	GACGC	2 cut(s)	254, 1273
Csp6I	GTAC	5 cut(s)	78, 561, 568, 760, 1051
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviQI	GTAC	5 cut(s)	78, 561, 568, 760, 1051
DinI	GGCGCC	1 cut(s)	1250
DpnI	GATC	8 cut(s)	123, 798, 1047, 1797, 1953, 2055, 2153, 2277
DpnII	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
DraI	TTTAAA	3 cut(s)	982, 1218, 1413
DriI	GACNNNNNGTC	1 cut(s)	1503
EaeI	YGGCCR	4 cut(s)	185, 1588, 1812, 2017
EagI	CGGCCG	1 cut(s)	1812
Eam1104I	CTCTTC	4 cut(s)	1457, 1711, 2208, 2304
Eam1105I	GACNNNNNGTC	1 cut(s)	1503
EarI	CTCTTC	4 cut(s)	1457, 1711, 2208, 2304
EciI	GGCGGA	1 cut(s)	268
Ecl136II	GAGCTC	2 cut(s)	2218, 2314
EclXI	CGGCCG	1 cut(s)	1812
Eco130I	CCWWGG	1 cut(s)	1441
Eco147I	AGGCCT	1 cut(s)	1733
Eco24I	GRGCYC	2 cut(s)	2220, 2316
Eco32I	GATATC	1 cut(s)	1456
Eco47I	GGWCC	4 cut(s)	377, 812, 1648, 2042
Eco52I	CGGCCG	1 cut(s)	1812
Eco53kI	GAGCTC	2 cut(s)	2218, 2314
Eco57I	CTGAAG	3 cut(s)	198, 1181, 1572
Eco88I	CYCGRG	1 cut(s)	1145
EcoICRI	GAGCTC	2 cut(s)	2218, 2314
EcoO109I	RGGNCCY	2 cut(s)	59, 377
EcoRII	CCWGG	2 cut(s)	158, 1079
EcoRV	GATATC	1 cut(s)	1456
EcoT14I	CCWWGG	1 cut(s)	1441
EcoT22I	ATGCAT	2 cut(s)	2238, 2334
EcoT38I	GRGCYC	2 cut(s)	2220, 2316
EgeI	GGCGCC	1 cut(s)	1250
EheI	GGCGCC	1 cut(s)	1250
ErhI	CCWWGG	1 cut(s)	1441
Esp3I	CGTCTC	1 cut(s)	1313
FalI	AAGNNNNNCTT	4 cut(s)	1004, 1036, 1146, 1178
FaqI	GGGAC	3 cut(s)	1911, 2024, 2258
FauI	CCCGC	3 cut(s)	22, 834, 1561
FauNDI	CATATG	1 cut(s)	933
FokI	GGATG	2 cut(s)	707, 835
FriOI	GRGCYC	2 cut(s)	2220, 2316
FspBI	CTAG	7 cut(s)	129, 320, 587, 698, 1710, 2027, 2132
GlaI	GCGC	3 cut(s)	1250, 2023, 2162
GsaI	CCCAGC	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	1252
HapII	CCGG	3 cut(s)	172, 1146, 2155
HgaI	GACGC	2 cut(s)	254, 1273
HhaI	GCGC	3 cut(s)	1251, 2024, 2163
Hin1I	GRCGYC	1 cut(s)	1249
Hin6I	GCGC	3 cut(s)	1249, 2022, 2161
HinP1I	GCGC	3 cut(s)	1249, 2022, 2161
HincII	GTYRAC	4 cut(s)	465, 864, 1402, 1861
HindII	GTYRAC	4 cut(s)	465, 864, 1402, 1861
HinfI	GANTC	8 cut(s)	99, 385, 451, 1040, 1231, 1280, 1667, 2137
HpaII	CCGG	3 cut(s)	172, 1146, 2155
HphI	GGTGA	3 cut(s)	1463, 1655, 2074
Hpy166II	GTNNAC	8 cut(s)	408, 465, 812, 864, 1402, 1425, 1861, 2169
Hpy188I	TCNGA	7 cut(s)	121, 1045, 1060, 1200, 1381, 1552, 2263
Hpy8I	GTNNAC	8 cut(s)	408, 465, 812, 864, 1402, 1425, 1861, 2169
Hpy99I	CGWCG	1 cut(s)	1296
HpyAV	CCTTC	4 cut(s)	173, 1006, 1205, 1750
HpyCH4III	ACNGT	3 cut(s)	1422, 1855, 1934
HpyCH4IV	ACGT	4 cut(s)	623, 1294, 1306, 2181
HpyF10VI	GCNNNNNNNGC	6 cut(s)	289, 698, 1025, 1255, 1264, 1759
HpySE526I	ACGT	4 cut(s)	623, 1294, 1306, 2181
Hsp92I	GRCGYC	1 cut(s)	1249
HspAI	GCGC	3 cut(s)	1249, 2022, 2161
KasI	GGCGCC	1 cut(s)	1248
Kzo9I	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
LguI	GCTCTTC	3 cut(s)	1457, 2208, 2304
LmnI	GCTCC	4 cut(s)	289, 496, 1327, 2158
Lsp1109I	GCAGC	2 cut(s)	335, 647
LweI	GCATC	6 cut(s)	262, 502, 729, 916, 932, 2101
MaeI	CTAG	7 cut(s)	129, 320, 587, 698, 1710, 2027, 2132
MaeII	ACGT	4 cut(s)	623, 1294, 1306, 2181
MaeIII	GTNAC	7 cut(s)	131, 546, 781, 1277, 1295, 1822, 1963
MalI	GATC	8 cut(s)	123, 798, 1047, 1797, 1953, 2055, 2153, 2277
MboI	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	3 cut(s)	410, 2220, 2316
Mly113I	GGCGCC	1 cut(s)	1249
MlyI	GAGTC	4 cut(s)	108, 394, 1274, 2146
MmeI	TCCRAC	4 cut(s)	166, 412, 853, 1544
Mph1103I	ATGCAT	2 cut(s)	2238, 2334
MroXI	GAANNNNTTC	1 cut(s)	1671
MseI	TTAA	7 cut(s)	279, 981, 1217, 1368, 1412, 1604, 1658
MspA1I	CMGCKG	3 cut(s)	326, 373, 1432
MspI	CCGG	3 cut(s)	172, 1146, 2155
MspR9I	CCNGG	6 cut(s)	160, 172, 1081, 1146, 1147, 2156
MvaI	CCWGG	2 cut(s)	160, 1081
MvnI	CGCG	2 cut(s)	2022, 2075
MwoI	GCNNNNNNNGC	6 cut(s)	289, 698, 1025, 1255, 1264, 1759
NarI	GGCGCC	1 cut(s)	1249
NciI	CCSGG	4 cut(s)	172, 1146, 1147, 2156
NdeI	CATATG	1 cut(s)	933
NdeII	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
NlaIV	GGNNCC	6 cut(s)	219, 378, 798, 1078, 1250, 1329
NmeAIII	GCCGAG	2 cut(s)	727, 1840
NmuCI	GTSAC	4 cut(s)	131, 546, 781, 1277
NsiI	ATGCAT	2 cut(s)	2238, 2334
NspI	RCATGY	3 cut(s)	1833, 1997, 2167
PagI	TCATGA	2 cut(s)	2209, 2305
PceI	AGGCCT	1 cut(s)	1733
PciSI	GCTCTTC	3 cut(s)	1457, 2208, 2304
PcsI	WCGNNNNNNNCGW	1 cut(s)	1312
PdmI	GAANNNNTTC	1 cut(s)	1671
PfeI	GAWTC	4 cut(s)	451, 1040, 1231, 1667
PflFI	GACNNNGTC	3 cut(s)	299, 675, 1283
PfoI	TCCNGGA	1 cut(s)	2154
PleI	GAGTC	4 cut(s)	107, 393, 1274, 2145
PluTI	GGCGCC	1 cut(s)	1252
PpsI	GAGTC	4 cut(s)	107, 393, 1274, 2145
PpuMI	RGGWCCY	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	2186
Psp124BI	GAGCTC	2 cut(s)	2220, 2316
Psp1406I	AACGTT	2 cut(s)	623, 2181
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	158, 1079
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	158, 1079
PspN4I	GGNNCC	6 cut(s)	219, 378, 798, 1078, 1250, 1329
PspPI	GGNCC	8 cut(s)	59, 377, 737, 812, 843, 1648, 2042, 2070
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	1729
PsuI	RGATCY	1 cut(s)	796
PsyI	GACNNNGTC	3 cut(s)	299, 675, 1283
RsaI	GTAC	5 cut(s)	79, 562, 569, 761, 1052
RsaNI	GTAC	5 cut(s)	78, 561, 568, 760, 1051
SacI	GAGCTC	2 cut(s)	2220, 2316
SapI	GCTCTTC	3 cut(s)	1457, 2208, 2304
SaqAI	TTAA	7 cut(s)	279, 981, 1217, 1368, 1412, 1604, 1658
Sau3AI	GATC	8 cut(s)	121, 796, 1045, 1795, 1951, 2053, 2151, 2275
Sau96I	GGNCC	8 cut(s)	59, 377, 737, 812, 843, 1648, 2042, 2070
ScaI	AGTACT	1 cut(s)	1052
SchI	GAGTC	4 cut(s)	108, 394, 1274, 2146
ScrFI	CCNGG	6 cut(s)	160, 172, 1081, 1146, 1147, 2156
SduI	GDGCHC	3 cut(s)	410, 2220, 2316
SfaNI	GCATC	6 cut(s)	262, 502, 729, 916, 932, 2101
SfcI	CTRYAG	3 cut(s)	556, 918, 1725
SfoI	GGCGCC	1 cut(s)	1250
SinI	GGWCC	4 cut(s)	377, 812, 1648, 2042
SmaI	CCCGGG	1 cut(s)	1147
SmlI	CTYRAG	4 cut(s)	522, 1099, 2219, 2315
SmoI	CTYRAG	4 cut(s)	522, 1099, 2219, 2315
SseBI	AGGCCT	1 cut(s)	1733
SspDI	GGCGCC	1 cut(s)	1248
SspI	AATATT	1 cut(s)	1559
SspMI	CTAG	7 cut(s)	129, 320, 587, 698, 1710, 2027, 2132
SstI	GAGCTC	2 cut(s)	2220, 2316
StuI	AGGCCT	1 cut(s)	1733
StyD4I	CCNGG	6 cut(s)	158, 170, 1079, 1144, 1145, 2154
StyI	CCWWGG	1 cut(s)	1441
TaaI	ACNGT	3 cut(s)	1422, 1855, 1934
TaiI	ACGT	4 cut(s)	626, 1297, 1309, 2184
TaqI	TCGA	3 cut(s)	670, 1798, 2140
TaqII	GACCGA	1 cut(s)	1900
TatI	WGTACW	3 cut(s)	567, 759, 1050
TfiI	GAWTC	4 cut(s)	451, 1040, 1231, 1667
Tru1I	TTAA	7 cut(s)	279, 981, 1217, 1368, 1412, 1604, 1658
Tru9I	TTAA	7 cut(s)	279, 981, 1217, 1368, 1412, 1604, 1658
TscAI	CASTG	5 cut(s)	451, 811, 945, 1981, 2020
TseFI	GTSAC	4 cut(s)	131, 546, 781, 1277
TseI	GCWGC	2 cut(s)	323, 660
Tsp45I	GTSAC	4 cut(s)	131, 546, 781, 1277
TspDTI	ATGAA	8 cut(s)	377, 980, 1233, 1530, 1664, 1680, 2226, 2322
TspGWI	ACGGA	2 cut(s)	212, 302
TspMI	CCCGGG	1 cut(s)	1145
TspRI	CASTG	5 cut(s)	451, 811, 945, 1981, 2020
Tth111I	GACNNNGTC	3 cut(s)	299, 675, 1283
VneI	GTGCAC	1 cut(s)	406
VpaK11BI	GGWCC	4 cut(s)	377, 812, 1648, 2042
XapI	RAATTY	6 cut(s)	15, 36, 497, 878, 1394, 1898
XbaI	TCTAGA	2 cut(s)	1709, 2026
XceI	RCATGY	3 cut(s)	1833, 1997, 2167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XmaI	CCCGGG	1 cut(s)	1145
XmnI	GAANNNNTTC	1 cut(s)	1671
XspI	CTAG	7 cut(s)	129, 320, 587, 698, 1710, 2027, 2132
ZrmI	AGTACT	1 cut(s)	1052
Zsp2I	ATGCAT	2 cut(s)	2238, 2334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.