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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 22 |
| AccI | GTMKAC | 2 cut(s) | 204, 241 |
| AccII | CGCG | 3 cut(s) | 133, 375, 432 |
| AciI | CCGC | 2 cut(s) | 291, 430 |
| AclI | AACGTT | 1 cut(s) | 330 |
| AclWI | GGATC | 1 cut(s) | 54 |
| AcoI | YGGCCR | 3 cut(s) | 30, 235, 480 |
| AcsI | RAATTY | 1 cut(s) | 473 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 22, 103 |
| AflIII | ACRYGT | 1 cut(s) | 358 |
| AgsI | TTSAA | 5 cut(s) | 103, 167, 248, 335, 440 |
| AhlI | ACTAGT | 1 cut(s) | 518 |
| AluBI | AGCT | 3 cut(s) | 112, 298, 436 |
| AluI | AGCT | 3 cut(s) | 112, 298, 436 |
| AlwI | GGATC | 1 cut(s) | 54 |
| Ama87I | CYCGRG | 2 cut(s) | 285, 448 |
| AoxI | GGCC | 3 cut(s) | 30, 235, 480 |
| ApoI | RAATTY | 1 cut(s) | 473 |
| AspLEI | GCGC | 3 cut(s) | 133, 135, 312 |
| AsuHPI | GGTGA | 1 cut(s) | 419 |
| AvaI | CYCGRG | 2 cut(s) | 285, 448 |
| BalI | TGGCCA | 2 cut(s) | 32, 482 |
| BceAI | ACGGC | 2 cut(s) | 81, 222 |
| BcuI | ACTAGT | 1 cut(s) | 518 |
| BfaI | CTAG | 3 cut(s) | 192, 417, 519 |
| BfmI | CTRYAG | 2 cut(s) | 91, 366 |
| BisI | GCNGC | 1 cut(s) | 291 |
| BlsI | GCNGC | 1 cut(s) | 292 |
| BmeT110I | CYCGRG | 2 cut(s) | 285, 448 |
| BmrI | ACTGGG | 1 cut(s) | 538 |
| BmsI | GCATC | 1 cut(s) | 178 |
| BmuI | ACTGGG | 1 cut(s) | 538 |
| BpuEI | CTTGAG | 2 cut(s) | 197, 453 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 252, 282 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 22, 103 |
| Bse1I | ACTGG | 2 cut(s) | 238, 533 |
| BseGI | GGATG | 1 cut(s) | 193 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 22, 103 |
| BseNI | ACTGG | 2 cut(s) | 238, 533 |
| BsePI | GCGCGC | 1 cut(s) | 131 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| Bsh1236I | CGCG | 3 cut(s) | 133, 375, 432 |
| BshFI | GGCC | 3 cut(s) | 32, 237, 482 |
| BsiHKCI | CYCGRG | 2 cut(s) | 285, 448 |
| BslFI | GGGAC | 2 cut(s) | 242, 545 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 22, 103 |
| BsmFI | GGGAC | 2 cut(s) | 242, 545 |
| BsnI | GGCC | 3 cut(s) | 32, 237, 482 |
| BsoBI | CYCGRG | 2 cut(s) | 285, 448 |
| Bsp143I | GATC | 1 cut(s) | 46 |
| Bsp68I | TCGCGA | 1 cut(s) | 375 |
| BspACI | CCGC | 2 cut(s) | 291, 430 |
| BspANI | GGCC | 3 cut(s) | 32, 237, 482 |
| BspFNI | CGCG | 3 cut(s) | 133, 375, 432 |
| BspHI | TCATGA | 1 cut(s) | 145 |
| BspMAI | CTGCAG | 1 cut(s) | 370 |
| BspPI | GGATC | 1 cut(s) | 54 |
| BsrI | ACTGG | 2 cut(s) | 238, 533 |
| BssHII | GCGCGC | 1 cut(s) | 131 |
| BssMI | GATC | 1 cut(s) | 46 |
| Bst4CI | ACNGT | 1 cut(s) | 380 |
| BstC8I | GCNNGC | 3 cut(s) | 133, 434, 506 |
| BstF5I | GGATG | 1 cut(s) | 193 |
| BstFNI | CGCG | 3 cut(s) | 133, 375, 432 |
| BstHHI | GCGC | 3 cut(s) | 133, 135, 312 |
| BstKTI | GATC | 1 cut(s) | 49 |
| BstMBI | GATC | 1 cut(s) | 46 |
| BstSFI | CTRYAG | 2 cut(s) | 91, 366 |
| BstUI | CGCG | 3 cut(s) | 133, 375, 432 |
| BstX2I | RGATCY | 1 cut(s) | 46 |
| BstYI | RGATCY | 1 cut(s) | 46 |
| BsuRI | GGCC | 3 cut(s) | 32, 237, 482 |
| BtsCI | GGATG | 1 cut(s) | 193 |
| BtsI | GCAGTG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 3 cut(s) | 85, 210, 231 |
| BtuMI | TCGCGA | 1 cut(s) | 375 |
| Cac8I | GCNNGC | 3 cut(s) | 133, 434, 506 |
| CciI | TCATGA | 1 cut(s) | 145 |
| CfoI | GCGC | 3 cut(s) | 133, 135, 312 |
| CseI | GACGC | 1 cut(s) | 542 |
| CviAII | CATG | 3 cut(s) | 146, 455, 537 |
| DpnI | GATC | 1 cut(s) | 48 |
| DpnII | GATC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 3 cut(s) | 30, 235, 480 |
| Eco88I | CYCGRG | 2 cut(s) | 285, 448 |
| EcoRI | GAATTC | 1 cut(s) | 473 |
| FaeI | CATG | 3 cut(s) | 149, 458, 540 |
| FaiI | YATR | 9 cut(s) | 57, 147, 185, 258, 315, 321, 383, 456, 538 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 159, 191 |
| FaqI | GGGAC | 2 cut(s) | 242, 545 |
| FatI | CATG | 3 cut(s) | 145, 454, 536 |
| FblI | GTMKAC | 2 cut(s) | 204, 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 291 |
| FokI | GGATG | 1 cut(s) | 200 |
| Fsp4HI | GCNGC | 1 cut(s) | 291 |
| FspBI | CTAG | 3 cut(s) | 192, 417, 519 |
| GlaI | GCGC | 3 cut(s) | 132, 134, 311 |
| GluI | GCNGC | 1 cut(s) | 291 |
| HaeIII | GGCC | 3 cut(s) | 32, 237, 482 |
| HgaI | GACGC | 1 cut(s) | 542 |
| HhaI | GCGC | 3 cut(s) | 133, 135, 312 |
| Hin1II | CATG | 3 cut(s) | 149, 458, 540 |
| Hin6I | GCGC | 3 cut(s) | 131, 133, 310 |
| HinP1I | GCGC | 3 cut(s) | 131, 133, 310 |
| HinfI | GANTC | 2 cut(s) | 195, 547 |
| HphI | GGTGA | 1 cut(s) | 419 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 242, 422 |
| Hpy188III | TCNNGA | 5 cut(s) | 146, 335, 374, 448, 470 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 242, 422 |
| HpyCH4III | ACNGT | 1 cut(s) | 380 |
| HpyCH4IV | ACGT | 2 cut(s) | 330, 358 |
| HpyCH4V | TGCA | 1 cut(s) | 368 |
| HpySE526I | ACGT | 2 cut(s) | 330, 358 |
| Hsp92II | CATG | 3 cut(s) | 149, 458, 540 |
| HspAI | GCGC | 3 cut(s) | 131, 133, 310 |
| Kzo9I | GATC | 1 cut(s) | 46 |
| LmnI | GCTCC | 1 cut(s) | 109 |
| LpnPI | CCDG | 5 cut(s) | 213, 219, 286, 401, 514 |
| LweI | GCATC | 1 cut(s) | 178 |
| MaeI | CTAG | 3 cut(s) | 192, 417, 519 |
| MaeII | ACGT | 2 cut(s) | 330, 358 |
| MaeIII | GTNAC | 3 cut(s) | 361, 397, 524 |
| MalI | GATC | 1 cut(s) | 48 |
| MboI | GATC | 1 cut(s) | 46 |
| MboII | GAAGA | 5 cut(s) | 179, 436, 542, 553, 556 |
| MflI | RGATCY | 1 cut(s) | 46 |
| MlsI | TGGCCA | 2 cut(s) | 32, 482 |
| MluCI | AATT | 5 cut(s) | 162, 253, 338, 473, 495 |
| MluNI | TGGCCA | 2 cut(s) | 32, 482 |
| MmeI | TCCRAC | 2 cut(s) | 330, 430 |
| MnlI | CCTC | 5 cut(s) | 37, 98, 100, 294, 444 |
| Mox20I | TGGCCA | 2 cut(s) | 32, 482 |
| MscI | TGGCCA | 2 cut(s) | 32, 482 |
| MseI | TTAA | 1 cut(s) | 219 |
| MslI | CAYNNNNRTG | 1 cut(s) | 318 |
| Msp20I | TGGCCA | 2 cut(s) | 32, 482 |
| MvnI | CGCG | 3 cut(s) | 133, 375, 432 |
| NdeII | GATC | 1 cut(s) | 46 |
| NlaIII | CATG | 3 cut(s) | 149, 458, 540 |
| NmeAIII | GCCGAG | 1 cut(s) | 370 |
| NmuCI | GTSAC | 2 cut(s) | 361, 524 |
| NruI | TCGCGA | 1 cut(s) | 375 |
| PaeR7I | CTCGAG | 2 cut(s) | 285, 448 |
| PagI | TCATGA | 1 cut(s) | 145 |
| PauI | GCGCGC | 1 cut(s) | 131 |
| PfeI | GAWTC | 2 cut(s) | 195, 547 |
| PflFI | GACNNNGTC | 1 cut(s) | 279 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 22 |
| PkrI | GCNGC | 1 cut(s) | 292 |
| Psp1406I | AACGTT | 1 cut(s) | 330 |
| PspXI | VCTCGAGB | 1 cut(s) | 285 |
| PstI | CTGCAG | 1 cut(s) | 370 |
| PsuI | RGATCY | 1 cut(s) | 46 |
| PsyI | GACNNNGTC | 1 cut(s) | 279 |
| PteI | GCGCGC | 1 cut(s) | 131 |
| RruI | TCGCGA | 1 cut(s) | 375 |
| RseI | CAYNNNNRTG | 1 cut(s) | 318 |
| SaqAI | TTAA | 1 cut(s) | 219 |
| SatI | GCNGC | 1 cut(s) | 291 |
| Sau3AI | GATC | 1 cut(s) | 46 |
| SetI | ASST | 7 cut(s) | 90, 114, 177, 300, 333, 361, 438 |
| SfaNI | GCATC | 1 cut(s) | 178 |
| SfcI | CTRYAG | 2 cut(s) | 91, 366 |
| Sfr274I | CTCGAG | 2 cut(s) | 285, 448 |
| SlaI | CTCGAG | 2 cut(s) | 285, 448 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 318 |
| SmlI | CTYRAG | 4 cut(s) | 176, 285, 448, 468 |
| SmoI | CTYRAG | 4 cut(s) | 176, 285, 448, 468 |
| SpeI | ACTAGT | 1 cut(s) | 518 |
| Sse9I | AATT | 5 cut(s) | 162, 253, 338, 473, 495 |
| SsiI | CCGC | 2 cut(s) | 291, 430 |
| SspMI | CTAG | 3 cut(s) | 192, 417, 519 |
| TaaI | ACNGT | 1 cut(s) | 380 |
| TaiI | ACGT | 2 cut(s) | 333, 361 |
| TaqI | TCGA | 2 cut(s) | 286, 449 |
| TasI | AATT | 5 cut(s) | 162, 253, 338, 473, 495 |
| TauI | GCSGC | 1 cut(s) | 293 |
| TfiI | GAWTC | 2 cut(s) | 195, 547 |
| Tru1I | TTAA | 1 cut(s) | 219 |
| Tru9I | TTAA | 1 cut(s) | 219 |
| TscAI | CASTG | 3 cut(s) | 85, 217, 238 |
| TseFI | GTSAC | 2 cut(s) | 361, 524 |
| Tsp45I | GTSAC | 2 cut(s) | 361, 524 |
| TspDTI | ATGAA | 1 cut(s) | 162 |
| TspRI | CASTG | 3 cut(s) | 85, 217, 238 |
| Tth111I | GACNNNGTC | 1 cut(s) | 279 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 22 |
| XapI | RAATTY | 1 cut(s) | 473 |
| XhoI | CTCGAG | 2 cut(s) | 285, 448 |
| XmiI | GTMKAC | 2 cut(s) | 204, 241 |
| XspI | CTAG | 3 cut(s) | 192, 417, 519 |