FvH4_5g16044

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000063
Physical Location & Seq
Reverse (-)
9123036 .. 9126733
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16044.t1

Sequence Viewer

Length: 2058 bp
ATGAGAGAGAGGGAGACTCGAGTCACTTCACTGCTCTCCGAGACGAAGACAAAGACAAAGACAGAGACAGATAGAGAAAATGCATATAAAGGATTGAGCATTGCACTTGCAGAAAACCATGCCGCTTTTTCTGAATGCCATGCCGGTTACCTTTCCACAGACTCCACAAAGCCTGGTCATGAGTATCACTGCATTCTTGGGCCTTATTTCTTCAAAGAGGTCCCCGAAGCCATTCAAATGGCTTCACAACTAGCTCAGCATGGAAATTGCCTTGGTGGCTGCCGGTGGATTTGCCAGGTCAAAATATTGAACTGGGATGCTGCTGATATATATTCTTATTCCAACTTTATGGAACATTATTTCAAGGCTAACCAAGAGGAAGAAGTTAAGATGGAGGAGCACATAGCATTCCTTCTTTATTGGTTGTGCAAATATGTGTTTTGTGTTGCATCAGAATGGGCGGGTCTTGCTGAGGCCTTGGCTTTGTTTGATAACATTGCGCTTGGACCAATAGTGCTGGCTCATCTTTACAGAGGCCTTCAGAAAATGGTTCAACGACGGCTGAACGGCAAGACTACTACTTCCGGGCCTATTTGGCTCTTTCAAATGTGGTTGCAGCTTTACTTTCCTGAACTGGCACCCCCTCTTGTCAGTTATCATCAAGATCAACTCTTGGGTGCCTCACTAGTTGCTGCTACTCTTCCAGACCATACACTAGAGATATGCTTCAACACACTTCAAAAATGCACTCATCGGACTGATGACCAGTGGTCTGTTTGCTTGAAACGAACTTACCCAAGCTTCCTGCAGCTACTATGGCCATCCAGTTCCAATGTTCCACTCGGTAGCATTTCCAGGGACATTTGGGCCAGCATATTGACCACCAGAGAGCTACATTTTGGAGTAAAAATTGGCACCGGAACTAGCTCTCATATCTACAATTGTGGAGCTGAACTTTACTGCCCAAACCACTTCAGCCGCCAACTTGGCTGCTTACAATATATACCAGTGCCACTGACTCCATCTGTGAACATGTATTCATCATGGAGAAAAAAATTTGAGCATGTGGTGGAAGTTAAAGAACTTTCTAAGAACTATGAAAGCATCTGTAGACAGTTCAAGCATCGACAATACACCAAGTCTTTCAAGTCAACCAACATTTACAATAGCTGGTGGGAAAACAAGATGTCGATTATCTCTTCGGTGGAATCCAAGCATAAGTTTGGCTGCGAGCCCGTACTGAACATCCCTCATCTAAAGTCTGATAGAACTCATCAAGCCATCGATGTTATTATTTTAGAAGATGAAGAAGATGAGGAGAGTGAAGATGAAATGCCTGTGGCCTCATTTATATCCAAGAAACATAAAAACCAGGAATTTCAAGATATACCAAATGGTTTTGGGCAGGTTAAAAGTGAATCCCAGAATCAACCATCAATAACTGAGACTCGACCCTTGCGAAGCACAATTCAGGAAAAGTCCAAAGCGGCTTCTCCATCAGAGTCGAGTGATGCGGCCTCGACAGCGAGAAAAACTGTTCTCACTTTTATGAACACCAGTTTGTCATCCCTGGTTGACATGGAGAGCTTTGAGAGGTTTAAAAAAGCCCTTCAAGTTCTAAAGAACTCCGGGGATGTGTCATCCAATACCCTATTGCTGCAAAGTCGACTGCAGGAGTTGGAGGCTCACCTTCCAGACTTCAGAGATGCCCAAAGAGAAATACGTGTTGTTGATGAAGGCTTGGCCCTTCTCCCAAATGCTACCTCTAAGATGGAAGCATCGGTGAAGCAATGTTCTAAAATTGAGGACAGGGTGAACAAGTTGAACCTTAGACTGGCCGAGCTTGAAGCTGAGATTGCTTTAGTTAGGACTGAGCGTGATCAAGCCTTGGGTGAACTGAACCTCGAGCTAGACATGAGGGCACCAATCCAGCGAAGTCTGGACAGAGCCAGCGAACTCAAAGAGAGCAAAAATCAATTGGCAGTGGAGATAATAAGAATCAGTAAACAATACGAAACATCCATGGCGGCACTCATGAATCAACTGGGATTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

686

Amino Acids

78.01

Weight (kDa)

6.13

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 112 - 393 1.3e-22 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1396
AccB1I GGYRCC 4 cut(s) 637, 677, 914, 1921
AccI GTMKAC 2 cut(s) 1111, 1666
AciI CCGC 6 cut(s) 123, 461, 979, 1487, 1514, 2027
AcoI YGGCCR 2 cut(s) 818, 1836
AcsI RAATTY 2 cut(s) 1055, 1376
AcuI CTGAAG 3 cut(s) 524, 958, 1684
AfaI GTAC 1 cut(s) 1239
AfiI CCNNNNNNNGG 1 cut(s) 1834
AflIII ACRYGT 2 cut(s) 1032, 1723
AhdI GACNNNNNGTC 1 cut(s) 769
AhlI ACTAGT 1 cut(s) 685
AjnI CCWGG 5 cut(s) 172, 294, 854, 1371, 1569
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 4 cut(s) 8, 35, 59, 1439
Ama87I CYCGRG 2 cut(s) 18, 1904
ApeKI GCWGC 8 cut(s) 279, 320, 616, 692, 808, 990, 1227, 1657
ApoI RAATTY 2 cut(s) 1055, 1376
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 6 cut(s) 200, 220, 506, 587, 867, 1744
AsuC2I CCSGG 2 cut(s) 586, 1630
AsuHPI GGTGA 4 cut(s) 1679, 1795, 1825, 1904
AvaI CYCGRG 2 cut(s) 18, 1904
AvaII GGWCC 2 cut(s) 220, 506
BaeGI GKGCMC 1 cut(s) 1924
BalI TGGCCA 1 cut(s) 820
BanI GGYRCC 4 cut(s) 637, 677, 914, 1921
BanII GRGCYC 1 cut(s) 1236
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 8 cut(s) 266, 307, 628, 679, 820, 977, 1214, 1644
BccI CCATC 7 cut(s) 385, 829, 1030, 1289, 1441, 1504, 1765
BceAI ACGGC 2 cut(s) 575, 583
BciT130I CCWGG 5 cut(s) 174, 296, 856, 1373, 1571
BclI TGATCA 1 cut(s) 1879
BcnI CCSGG 2 cut(s) 586, 1630
BcoDI GTCTC 4 cut(s) 8, 35, 59, 1439
BcuI ACTAGT 1 cut(s) 685
BfaI CTAG 6 cut(s) 251, 686, 716, 924, 1910, 2056
BfmI CTRYAG 3 cut(s) 806, 1108, 1670
BfuAI ACCTGC 1 cut(s) 1396
BglI GCCNNNNNGGC 3 cut(s) 276, 595, 987
BlpI GCTNAGC 1 cut(s) 255
Bme1390I CCNGG 7 cut(s) 174, 296, 586, 856, 1373, 1571, 1630
Bme18I GGWCC 2 cut(s) 220, 506
BmeRI GACNNNNNGTC 1 cut(s) 769
BmeT110I CYCGRG 2 cut(s) 18, 1904
BmgT120I GGNCC 6 cut(s) 200, 220, 506, 587, 867, 1744
BmiI GGNNCC 5 cut(s) 222, 639, 679, 916, 1923
BmrFI CCNGG 7 cut(s) 174, 296, 586, 856, 1373, 1571, 1630
BmrI ACTGGG 2 cut(s) 322, 2054
BmsI GCATC 7 cut(s) 307, 458, 1113, 1132, 1501, 1696, 1787
BmuI ACTGGG 2 cut(s) 322, 2054
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 2 cut(s) 586, 1630
Bsa29I ATCGAT 1 cut(s) 1284
BsaAI YACGTR 1 cut(s) 1724
BsaJI CCNNGG 7 cut(s) 271, 477, 855, 1569, 1629, 1887, 2022
BsaWI WCCGGW 1 cut(s) 917
Bsc4I CCNNNNNNNGG 1 cut(s) 1834
Bse118I RCCGGY 2 cut(s) 143, 282
Bse1I ACTGG 8 cut(s) 317, 639, 766, 825, 1007, 1557, 1839, 2049
Bse3DI GCAATG 3 cut(s) 99, 495, 1796
BseBI CCWGG 5 cut(s) 174, 296, 856, 1373, 1571
BseCI ATCGAT 1 cut(s) 1284
BseDI CCNNGG 7 cut(s) 271, 477, 855, 1569, 1629, 1887, 2022
BseGI GGATG 7 cut(s) 322, 821, 1245, 1565, 1639, 1640, 2018
BseLI CCNNNNNNNGG 1 cut(s) 1834
BseMI GCAATG 3 cut(s) 99, 495, 1796
BseMII CTCAG 5 cut(s) 269, 462, 1434, 1842, 1863
BseNI ACTGG 8 cut(s) 317, 639, 766, 825, 1007, 1557, 1839, 2049
BseRI GAGGAG 2 cut(s) 410, 1331
BseSI GKGCMC 1 cut(s) 1924
BseXI GCAGC 8 cut(s) 266, 307, 628, 679, 820, 977, 1214, 1644
BshNI GGYRCC 4 cut(s) 637, 677, 914, 1921
BshVI ATCGAT 1 cut(s) 1284
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 2 cut(s) 18, 1904
BsiSI CCGG 5 cut(s) 144, 283, 585, 918, 1629
BslFI GGGAC 2 cut(s) 206, 872
BslI CCNNNNNNNGG 1 cut(s) 1834
BsmAI GTCTC 4 cut(s) 8, 35, 59, 1439
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 206, 872
BsmI GAATGC 3 cut(s) 140, 192, 407
BsoBI CYCGRG 2 cut(s) 18, 1904
Bsp1286I GDGCHC 3 cut(s) 402, 1236, 1924
Bsp143I GATC 2 cut(s) 664, 1879
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 2022
BspACI CCGC 6 cut(s) 123, 461, 979, 1487, 1514, 2027
BspCNI CTCAG 5 cut(s) 268, 463, 1435, 1843, 1864
BspDI ATCGAT 1 cut(s) 1284
BspHI TCATGA 2 cut(s) 178, 2034
BspLI GGNNCC 5 cut(s) 222, 639, 679, 916, 1923
BspMAI CTGCAG 2 cut(s) 810, 1674
BspMI ACCTGC 1 cut(s) 1396
BspT107I GGYRCC 4 cut(s) 637, 677, 914, 1921
BsrDI GCAATG 3 cut(s) 99, 495, 1796
BsrFI RCCGGY 2 cut(s) 143, 282
BsrI ACTGG 8 cut(s) 317, 639, 766, 825, 1007, 1557, 1839, 2049
BssAI RCCGGY 2 cut(s) 143, 282
BssECI CCNNGG 7 cut(s) 271, 477, 855, 1569, 1629, 1887, 2022
BssMI GATC 2 cut(s) 664, 1879
BssT1I CCWWGG 4 cut(s) 271, 477, 1887, 2022
Bst2UI CCWGG 5 cut(s) 174, 296, 856, 1373, 1571
Bst4CI ACNGT 2 cut(s) 1116, 1537
Bst6I CTCTTC 2 cut(s) 705, 1204
BstBAI YACGTR 1 cut(s) 1724
BstC8I GCNNGC 4 cut(s) 519, 871, 1232, 1951
BstDEI CTNAG 8 cut(s) 255, 471, 1089, 1443, 1767, 1829, 1851, 1872
BstDSI CCRYGG 1 cut(s) 2022
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 7 cut(s) 322, 821, 1245, 1565, 1639, 1640, 2018
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 2 cut(s) 667, 1882
BstMAI GTCTC 4 cut(s) 8, 35, 59, 1439
BstMBI GATC 2 cut(s) 664, 1879
BstMWI GCNNNNNNNGC 7 cut(s) 276, 467, 595, 817, 987, 1523, 1856
BstNI CCWGG 5 cut(s) 174, 296, 856, 1373, 1571
BstNSI RCATGY 2 cut(s) 1036, 1067
BstPAI GACNNNNGTC 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 7 cut(s) 172, 294, 584, 854, 1371, 1569, 1628
BstSFI CTRYAG 3 cut(s) 806, 1108, 1670
BstSLI GKGCMC 1 cut(s) 1924
BstV1I GCAGC 8 cut(s) 266, 307, 628, 679, 820, 977, 1214, 1644
BstV2I GAAGAC 1 cut(s) 53
BstXI CCANNNNNNTGG 2 cut(s) 238, 349
Bsu15I ATCGAT 1 cut(s) 1284
BsuTUI ATCGAT 1 cut(s) 1284
BtgI CCRYGG 1 cut(s) 2022
BtsCI GGATG 7 cut(s) 322, 821, 1245, 1565, 1639, 1640, 2018
BtsI GCAGTG 3 cut(s) 29, 187, 1989
BtsIMutI CAGTG 6 cut(s) 29, 187, 773, 1013, 1014, 1989
BveI ACCTGC 1 cut(s) 1396
Cac8I GCNNGC 4 cut(s) 519, 871, 1232, 1951
CciI TCATGA 2 cut(s) 178, 2034
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 2 cut(s) 143, 282
Cfr13I GGNCC 6 cut(s) 200, 220, 506, 587, 867, 1744
ClaI ATCGAT 1 cut(s) 1284
Csp6I GTAC 1 cut(s) 1238
CviQI GTAC 1 cut(s) 1238
DdeI CTNAG 8 cut(s) 255, 471, 1089, 1443, 1767, 1829, 1851, 1872
DpnI GATC 2 cut(s) 666, 1881
DpnII GATC 2 cut(s) 664, 1879
DraI TTTAAA 1 cut(s) 1600
DriI GACNNNNNGTC 1 cut(s) 769
EaeI YGGCCR 2 cut(s) 818, 1836
Eam1104I CTCTTC 2 cut(s) 705, 1204
Eam1105I GACNNNNNGTC 1 cut(s) 769
EarI CTCTTC 2 cut(s) 705, 1204
Eco130I CCWWGG 4 cut(s) 271, 477, 1887, 2022
Eco147I AGGCCT 2 cut(s) 476, 537
Eco24I GRGCYC 1 cut(s) 1236
Eco47I GGWCC 2 cut(s) 220, 506
Eco57I CTGAAG 3 cut(s) 524, 958, 1684
Eco88I CYCGRG 2 cut(s) 18, 1904
Eco91I GGTNACC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 5 cut(s) 172, 294, 854, 1371, 1569
EcoT14I CCWWGG 4 cut(s) 271, 477, 1887, 2022
EcoT22I ATGCAT 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 1236
ErhI CCWWGG 4 cut(s) 271, 477, 1887, 2022
Esp3I CGTCTC 1 cut(s) 35
FaqI GGGAC 2 cut(s) 206, 872
FauI CCCGC 1 cut(s) 454
FbaI TGATCA 1 cut(s) 1879
FblI GTMKAC 2 cut(s) 1111, 1666
FokI GGATG 7 cut(s) 329, 808, 1232, 1552, 1627, 1646, 2005
FriOI GRGCYC 1 cut(s) 1236
FspBI CTAG 6 cut(s) 251, 686, 716, 924, 1910, 2056
GlaI GCGC 1 cut(s) 501
HapII CCGG 5 cut(s) 144, 283, 585, 918, 1629
HhaI GCGC 1 cut(s) 502
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 3 cut(s) 1152, 1576, 1667
HindII GTYRAC 3 cut(s) 1152, 1576, 1667
HindIII AAGCTT 1 cut(s) 799
HpaII CCGG 5 cut(s) 144, 283, 585, 918, 1629
HphI GGTGA 4 cut(s) 1679, 1795, 1825, 1904
Hpy166II GTNNAC 8 cut(s) 1030, 1112, 1152, 1576, 1667, 1816, 1895, 2006
Hpy188I TCNGA 8 cut(s) 40, 133, 454, 543, 756, 1264, 1501, 1703
Hpy188III TCNNGA 9 cut(s) 179, 629, 662, 704, 1382, 1472, 1694, 1940, 2035
Hpy8I GTNNAC 8 cut(s) 1030, 1112, 1152, 1576, 1667, 1816, 1895, 2006
Hpy99I CGWCG 1 cut(s) 561
HpyAV CCTTC 6 cut(s) 422, 548, 1619, 1700, 1730, 1757
HpyCH4III ACNGT 2 cut(s) 1116, 1537
HpyCH4IV ACGT 1 cut(s) 1723
HpyF10VI GCNNNNNNNGC 7 cut(s) 276, 467, 595, 817, 987, 1523, 1856
HpyF3I CTNAG 8 cut(s) 255, 471, 1089, 1443, 1767, 1829, 1851, 1872
HpySE526I ACGT 1 cut(s) 1723
HspAI GCGC 1 cut(s) 500
Ksp22I TGATCA 1 cut(s) 1879
Kzo9I GATC 2 cut(s) 664, 1879
LmnI GCTCC 2 cut(s) 397, 947
Lsp1109I GCAGC 8 cut(s) 266, 307, 628, 679, 820, 977, 1214, 1644
LweI GCATC 7 cut(s) 307, 458, 1113, 1132, 1501, 1696, 1787
MaeI CTAG 6 cut(s) 251, 686, 716, 924, 1910, 2056
MaeII ACGT 1 cut(s) 1723
MaeIII GTNAC 2 cut(s) 22, 146
MalI GATC 2 cut(s) 666, 1881
MboI GATC 2 cut(s) 664, 1879
MboII GAAGA 9 cut(s) 58, 202, 392, 692, 1191, 1313, 1319, 1322, 1337
MfeI CAATTG 2 cut(s) 940, 1976
MhlI GDGCHC 3 cut(s) 402, 1236, 1924
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 8 cut(s) 265, 909, 940, 1055, 1376, 1467, 1800, 1976
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 6 cut(s) 10, 30, 155, 1012, 1441, 1511
MmeI TCCRAC 2 cut(s) 366, 1659
Mox20I TGGCCA 1 cut(s) 820
Mph1103I ATGCAT 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 231
MscI TGGCCA 1 cut(s) 820
MseI TTAA 4 cut(s) 387, 1077, 1410, 1599
MslI CAYNNNNRTG 3 cut(s) 236, 454, 1547
Msp20I TGGCCA 1 cut(s) 820
MspI CCGG 5 cut(s) 144, 283, 585, 918, 1629
MspR9I CCNGG 7 cut(s) 174, 296, 586, 856, 1373, 1571, 1630
MunI CAATTG 2 cut(s) 940, 1976
Mva1269I GAATGC 3 cut(s) 140, 192, 407
MvaI CCWGG 5 cut(s) 174, 296, 856, 1373, 1571
MwoI GCNNNNNNNGC 7 cut(s) 276, 467, 595, 817, 987, 1523, 1856
NciI CCSGG 2 cut(s) 586, 1630
NcoI CCATGG 1 cut(s) 2022
NdeII GATC 2 cut(s) 664, 1879
NlaIV GGNNCC 5 cut(s) 222, 639, 679, 916, 1923
NmeAIII GCCGAG 1 cut(s) 1864
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 2 cut(s) 1036, 1067
PaeR7I CTCGAG 2 cut(s) 18, 1904
PagI TCATGA 2 cut(s) 178, 2034
PceI AGGCCT 2 cut(s) 476, 537
PciI ACATGT 1 cut(s) 1032
PcsI WCGNNNNNNNCGW 1 cut(s) 1456
PctI GAATGC 3 cut(s) 140, 192, 407
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 5 cut(s) 1208, 1418, 1426, 1998, 2038
PleI GAGTC 6 cut(s) 10, 29, 155, 1012, 1441, 1510
PpsI GAGTC 6 cut(s) 10, 29, 155, 1012, 1441, 1510
Ppu21I YACGTR 1 cut(s) 1724
PpuMI RGGWCCY 1 cut(s) 220
PscI ACATGT 1 cut(s) 1032
PshAI GACNNNNGTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 5 cut(s) 172, 294, 854, 1371, 1569
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 5 cut(s) 172, 294, 854, 1371, 1569
PspN4I GGNNCC 5 cut(s) 222, 639, 679, 916, 1923
PspPI GGNCC 6 cut(s) 200, 220, 506, 587, 867, 1744
PspPPI RGGWCCY 1 cut(s) 220
PspXI VCTCGAGB 2 cut(s) 18, 1904
PstI CTGCAG 2 cut(s) 810, 1674
RsaI GTAC 1 cut(s) 1239
RsaNI GTAC 1 cut(s) 1238
RseI CAYNNNNRTG 3 cut(s) 236, 454, 1547
SalI GTCGAC 1 cut(s) 1665
SaqAI TTAA 4 cut(s) 387, 1077, 1410, 1599
Sau3AI GATC 2 cut(s) 664, 1879
Sau96I GGNCC 6 cut(s) 200, 220, 506, 587, 867, 1744
SchI GAGTC 6 cut(s) 10, 30, 155, 1012, 1441, 1511
ScrFI CCNGG 7 cut(s) 174, 296, 586, 856, 1373, 1571, 1630
SduI GDGCHC 3 cut(s) 402, 1236, 1924
SfaNI GCATC 7 cut(s) 307, 458, 1113, 1132, 1501, 1696, 1787
SfcI CTRYAG 3 cut(s) 806, 1108, 1670
Sfr274I CTCGAG 2 cut(s) 18, 1904
SinI GGWCC 2 cut(s) 220, 506
SlaI CTCGAG 2 cut(s) 18, 1904
SmiMI CAYNNNNRTG 3 cut(s) 236, 454, 1547
SmlI CTYRAG 2 cut(s) 18, 1904
SmoI CTYRAG 2 cut(s) 18, 1904
SpeI ACTAGT 1 cut(s) 685
Sse9I AATT 8 cut(s) 265, 909, 940, 1055, 1376, 1467, 1800, 1976
SseBI AGGCCT 2 cut(s) 476, 537
SsiI CCGC 6 cut(s) 123, 461, 979, 1487, 1514, 2027
SspI AATATT 1 cut(s) 306
SspMI CTAG 6 cut(s) 251, 686, 716, 924, 1910, 2056
StuI AGGCCT 2 cut(s) 476, 537
StyD4I CCNGG 7 cut(s) 172, 294, 584, 854, 1371, 1569, 1628
StyI CCWWGG 4 cut(s) 271, 477, 1887, 2022
TaaI ACNGT 2 cut(s) 1116, 1537
TaiI ACGT 1 cut(s) 1726
TaqI TCGA 9 cut(s) 19, 1126, 1190, 1284, 1450, 1505, 1520, 1666, 1905
TasI AATT 8 cut(s) 265, 909, 940, 1055, 1376, 1467, 1800, 1976
TauI GCSGC 5 cut(s) 125, 981, 1490, 1517, 2030
TfiI GAWTC 5 cut(s) 1208, 1418, 1426, 1998, 2038
Tru1I TTAA 4 cut(s) 387, 1077, 1410, 1599
Tru9I TTAA 4 cut(s) 387, 1077, 1410, 1599
TscAI CASTG 6 cut(s) 36, 194, 773, 1014, 1020, 1989
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 8 cut(s) 279, 320, 616, 692, 808, 990, 1227, 1657
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 7 cut(s) 1029, 1113, 1320, 1344, 1565, 1749, 2051
TspRI CASTG 6 cut(s) 36, 194, 773, 1014, 1020, 1989
VpaK11BI GGWCC 2 cut(s) 220, 506
XapI RAATTY 2 cut(s) 1055, 1376
XceI RCATGY 2 cut(s) 1036, 1067
XhoI CTCGAG 2 cut(s) 18, 1904
XmiI GTMKAC 2 cut(s) 1111, 1666
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 6 cut(s) 251, 686, 716, 924, 1910, 2056
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.