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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 383 |
| AciI | CCGC | 1 cut(s) | 383 |
| AclWI | GGATC | 1 cut(s) | 408 |
| AcoI | YGGCCR | 1 cut(s) | 384 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 256 |
| AflIII | ACRYGT | 1 cut(s) | 418 |
| AgsI | TTSAA | 1 cut(s) | 233 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 223 |
| AluBI | AGCT | 6 cut(s) | 22, 188, 281, 308, 322, 461 |
| AluI | AGCT | 6 cut(s) | 22, 188, 281, 308, 322, 461 |
| Alw21I | GWGCWC | 2 cut(s) | 24, 484 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| Alw44I | GTGCAC | 1 cut(s) | 480 |
| AlwI | GGATC | 1 cut(s) | 408 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApaLI | GTGCAC | 1 cut(s) | 480 |
| ApeKI | GCWGC | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 2 cut(s) | 155, 224 |
| BaeGI | GKGCMC | 1 cut(s) | 484 |
| BanII | GRGCYC | 1 cut(s) | 24 |
| BbsI | GAAGAC | 1 cut(s) | 222 |
| Bbv12I | GWGCWC | 2 cut(s) | 24, 484 |
| BbvI | GCAGC | 1 cut(s) | 175 |
| BccI | CCATC | 2 cut(s) | 56, 349 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 461, 495 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfaI | CTAG | 2 cut(s) | 314, 339 |
| BisI | GCNGC | 2 cut(s) | 189, 384 |
| BlsI | GCNGC | 2 cut(s) | 190, 385 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 223 |
| BpiI | GAAGAC | 1 cut(s) | 222 |
| Bpu10I | CCTNAGC | 1 cut(s) | 304 |
| Bsa29I | ATCGAT | 1 cut(s) | 327 |
| BsaJI | CCNNGG | 2 cut(s) | 120, 255 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 256 |
| Bse1I | ACTGG | 1 cut(s) | 377 |
| BseCI | ATCGAT | 1 cut(s) | 327 |
| BseDI | CCNNGG | 2 cut(s) | 120, 255 |
| BseGI | GGATG | 1 cut(s) | 265 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BseMII | CTCAG | 2 cut(s) | 37, 90 |
| BseNI | ACTGG | 1 cut(s) | 377 |
| BseSI | GKGCMC | 1 cut(s) | 484 |
| BseXI | GCAGC | 1 cut(s) | 175 |
| Bsh1236I | CGCG | 1 cut(s) | 383 |
| Bsh1285I | CGRYCG | 1 cut(s) | 331 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BshVI | ATCGAT | 1 cut(s) | 327 |
| BsiEI | CGRYCG | 1 cut(s) | 331 |
| BsiHKAI | GWGCWC | 2 cut(s) | 24, 484 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsnI | GGCC | 1 cut(s) | 386 |
| Bsp1286I | GDGCHC | 2 cut(s) | 24, 484 |
| Bsp143I | GATC | 2 cut(s) | 328, 400 |
| BspACI | CCGC | 1 cut(s) | 383 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspCNI | CTCAG | 2 cut(s) | 36, 89 |
| BspDI | ATCGAT | 1 cut(s) | 327 |
| BspFNI | CGCG | 1 cut(s) | 383 |
| BspHI | TCATGA | 1 cut(s) | 494 |
| BspPI | GGATC | 1 cut(s) | 408 |
| BsrI | ACTGG | 1 cut(s) | 377 |
| BssECI | CCNNGG | 2 cut(s) | 120, 255 |
| BssMI | GATC | 2 cut(s) | 328, 400 |
| BssT1I | CCWWGG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 2 cut(s) | 160, 452 |
| BstDEI | CTNAG | 3 cut(s) | 23, 76, 304 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 254 |
| BstF5I | GGATG | 1 cut(s) | 265 |
| BstFNI | CGCG | 1 cut(s) | 383 |
| BstKTI | GATC | 2 cut(s) | 331, 403 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMBI | GATC | 2 cut(s) | 328, 400 |
| BstMCI | CGRYCG | 1 cut(s) | 331 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 319 |
| BstSLI | GKGCMC | 1 cut(s) | 484 |
| BstUI | CGCG | 1 cut(s) | 383 |
| BstV1I | GCAGC | 1 cut(s) | 175 |
| BstV2I | GAAGAC | 1 cut(s) | 222 |
| BstX2I | RGATCY | 1 cut(s) | 400 |
| BstYI | RGATCY | 1 cut(s) | 400 |
| Bsu15I | ATCGAT | 1 cut(s) | 327 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BsuTUI | ATCGAT | 1 cut(s) | 327 |
| BtsCI | GGATG | 1 cut(s) | 265 |
| BtsIMutI | CAGTG | 1 cut(s) | 439 |
| CciI | TCATGA | 1 cut(s) | 494 |
| ClaI | ATCGAT | 1 cut(s) | 327 |
| CviAII | CATG | 2 cut(s) | 223, 495 |
| DdeI | CTNAG | 3 cut(s) | 23, 76, 304 |
| DpnI | GATC | 2 cut(s) | 330, 402 |
| DpnII | GATC | 2 cut(s) | 328, 400 |
| DriI | GACNNNNNGTC | 1 cut(s) | 223 |
| EaeI | YGGCCR | 1 cut(s) | 384 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 223 |
| Ecl136II | GAGCTC | 1 cut(s) | 22 |
| Eco130I | CCWWGG | 1 cut(s) | 255 |
| Eco24I | GRGCYC | 1 cut(s) | 24 |
| Eco53kI | GAGCTC | 1 cut(s) | 22 |
| EcoICRI | GAGCTC | 1 cut(s) | 22 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 254 |
| EcoT14I | CCWWGG | 1 cut(s) | 255 |
| EcoT38I | GRGCYC | 1 cut(s) | 24 |
| ErhI | CCWWGG | 1 cut(s) | 255 |
| FaeI | CATG | 2 cut(s) | 226, 498 |
| FaiI | YATR | 6 cut(s) | 224, 296, 345, 411, 458, 496 |
| FatI | CATG | 2 cut(s) | 222, 494 |
| Fnu4HI | GCNGC | 2 cut(s) | 189, 384 |
| FokI | GGATG | 1 cut(s) | 272 |
| FriOI | GRGCYC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 2 cut(s) | 189, 384 |
| FspBI | CTAG | 2 cut(s) | 314, 339 |
| GluI | GCNGC | 2 cut(s) | 189, 384 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| Hin1II | CATG | 2 cut(s) | 226, 498 |
| HinfI | GANTC | 1 cut(s) | 236 |
| HphI | GGTGA | 2 cut(s) | 155, 224 |
| Hpy166II | GTNNAC | 1 cut(s) | 482 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 26 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 495 |
| Hpy8I | GTNNAC | 1 cut(s) | 482 |
| HpyAV | CCTTC | 2 cut(s) | 141, 203 |
| HpyCH4III | ACNGT | 2 cut(s) | 160, 452 |
| HpyCH4IV | ACGT | 1 cut(s) | 418 |
| HpyCH4V | TGCA | 1 cut(s) | 482 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 319 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 76, 304 |
| HpySE526I | ACGT | 1 cut(s) | 418 |
| Hsp92II | CATG | 2 cut(s) | 226, 498 |
| Kzo9I | GATC | 2 cut(s) | 328, 400 |
| LpnPI | CCDG | 3 cut(s) | 126, 291, 390 |
| Lsp1109I | GCAGC | 1 cut(s) | 175 |
| MaeI | CTAG | 2 cut(s) | 314, 339 |
| MaeII | ACGT | 1 cut(s) | 418 |
| MalI | GATC | 2 cut(s) | 330, 402 |
| MboI | GATC | 2 cut(s) | 328, 400 |
| MboII | GAAGA | 4 cut(s) | 47, 227, 245, 278 |
| MfeI | CAATTG | 1 cut(s) | 228 |
| MflI | RGATCY | 1 cut(s) | 400 |
| MhlI | GDGCHC | 2 cut(s) | 24, 484 |
| MluCI | AATT | 2 cut(s) | 164, 228 |
| MmeI | TCCRAC | 1 cut(s) | 159 |
| MnlI | CCTC | 4 cut(s) | 115, 259, 391, 452 |
| MseI | TTAA | 1 cut(s) | 83 |
| MunI | CAATTG | 1 cut(s) | 228 |
| MvnI | CGCG | 1 cut(s) | 383 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 319 |
| NdeII | GATC | 2 cut(s) | 328, 400 |
| NlaIII | CATG | 2 cut(s) | 226, 498 |
| NmeAIII | GCCGAG | 1 cut(s) | 43 |
| PagI | TCATGA | 1 cut(s) | 494 |
| PfeI | GAWTC | 1 cut(s) | 236 |
| PkrI | GCNGC | 2 cut(s) | 190, 385 |
| Ple19I | CGATCG | 1 cut(s) | 331 |
| Psp124BI | GAGCTC | 1 cut(s) | 24 |
| PsuI | RGATCY | 1 cut(s) | 400 |
| PvuI | CGATCG | 1 cut(s) | 331 |
| SacI | GAGCTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 1 cut(s) | 83 |
| SatI | GCNGC | 2 cut(s) | 189, 384 |
| Sau3AI | GATC | 2 cut(s) | 328, 400 |
| SduI | GDGCHC | 2 cut(s) | 24, 484 |
| Sse9I | AATT | 2 cut(s) | 164, 228 |
| SsiI | CCGC | 1 cut(s) | 383 |
| SspMI | CTAG | 2 cut(s) | 314, 339 |
| SstI | GAGCTC | 1 cut(s) | 24 |
| StyI | CCWWGG | 1 cut(s) | 255 |
| TaaI | ACNGT | 2 cut(s) | 160, 452 |
| TaiI | ACGT | 1 cut(s) | 421 |
| TaqI | TCGA | 4 cut(s) | 58, 327, 331, 471 |
| TasI | AATT | 2 cut(s) | 164, 228 |
| TauI | GCSGC | 1 cut(s) | 386 |
| TfiI | GAWTC | 1 cut(s) | 236 |
| Tru1I | TTAA | 1 cut(s) | 83 |
| Tru9I | TTAA | 1 cut(s) | 83 |
| TscAI | CASTG | 1 cut(s) | 439 |
| TseI | GCWGC | 1 cut(s) | 188 |
| TspDTI | ATGAA | 3 cut(s) | 48, 198, 445 |
| TspRI | CASTG | 1 cut(s) | 439 |
| VneI | GTGCAC | 1 cut(s) | 480 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 254 |
| XspI | CTAG | 2 cut(s) | 314, 339 |