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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 290, 394 |
| AcoI | YGGCCR | 3 cut(s) | 291, 330, 391 |
| AgeI | ACCGGT | 1 cut(s) | 51 |
| AgsI | TTSAA | 1 cut(s) | 437 |
| AhlI | ACTAGT | 1 cut(s) | 299 |
| AjiI | CACGTC | 2 cut(s) | 163, 273 |
| AluBI | AGCT | 4 cut(s) | 128, 257, 281, 426 |
| AluI | AGCT | 4 cut(s) | 128, 257, 281, 426 |
| Alw21I | GWGCWC | 1 cut(s) | 130 |
| Ama87I | CYCGRG | 1 cut(s) | 9 |
| AoxI | GGCC | 3 cut(s) | 291, 330, 391 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 203, 235 |
| AsiGI | ACCGGT | 1 cut(s) | 51 |
| AsuC2I | CCSGG | 2 cut(s) | 10, 11 |
| AsuHPI | GGTGA | 3 cut(s) | 12, 147, 239 |
| AvaI | CYCGRG | 1 cut(s) | 9 |
| BanII | GRGCYC | 2 cut(s) | 130, 329 |
| BbsI | GAAGAC | 1 cut(s) | 216 |
| Bbv12I | GWGCWC | 1 cut(s) | 130 |
| BbvCI | CCTCAGC | 1 cut(s) | 282 |
| BccI | CCATC | 1 cut(s) | 383 |
| BclI | TGATCA | 1 cut(s) | 400 |
| BcnI | CCSGG | 2 cut(s) | 10, 11 |
| BcuI | ACTAGT | 1 cut(s) | 299 |
| BfaI | CTAG | 2 cut(s) | 254, 300 |
| BisI | GCNGC | 2 cut(s) | 291, 394 |
| BlsI | GCNGC | 2 cut(s) | 292, 395 |
| Bme1390I | CCNGG | 2 cut(s) | 10, 11 |
| BmeT110I | CYCGRG | 1 cut(s) | 9 |
| BmgBI | CACGTC | 2 cut(s) | 163, 273 |
| BmrFI | CCNGG | 2 cut(s) | 10, 11 |
| BmsI | GCATC | 3 cut(s) | 277, 295, 421 |
| BpiI | GAAGAC | 1 cut(s) | 216 |
| BpmI | CTGGAG | 1 cut(s) | 297 |
| Bpu10I | CCTNAGC | 1 cut(s) | 282 |
| BpuMI | CCSGG | 2 cut(s) | 10, 11 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 83, 429 |
| BsaWI | WCCGGW | 1 cut(s) | 51 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseDI | CCNNGG | 3 cut(s) | 9, 83, 429 |
| BseGI | GGATG | 3 cut(s) | 292, 412, 454 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseX3I | CGGCCG | 2 cut(s) | 291, 330 |
| Bsh1285I | CGRYCG | 2 cut(s) | 294, 333 |
| BshFI | GGCC | 3 cut(s) | 293, 332, 393 |
| BshTI | ACCGGT | 1 cut(s) | 51 |
| BsiEI | CGRYCG | 2 cut(s) | 294, 333 |
| BsiHKAI | GWGCWC | 1 cut(s) | 130 |
| BsiHKCI | CYCGRG | 1 cut(s) | 9 |
| BsiSI | CCGG | 2 cut(s) | 10, 52 |
| BsnI | GGCC | 3 cut(s) | 293, 332, 393 |
| BsoBI | CYCGRG | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 2 cut(s) | 130, 329 |
| Bsp143I | GATC | 1 cut(s) | 400 |
| Bsp19I | CCATGG | 1 cut(s) | 429 |
| BspACI | CCGC | 2 cut(s) | 290, 394 |
| BspANI | GGCC | 3 cut(s) | 293, 332, 393 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspQI | GCTCTTC | 1 cut(s) | 118 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssECI | CCNNGG | 3 cut(s) | 9, 83, 429 |
| BssMI | GATC | 1 cut(s) | 400 |
| BssT1I | CCWWGG | 2 cut(s) | 83, 429 |
| Bst4CI | ACNGT | 1 cut(s) | 363 |
| Bst6I | CTCTTC | 2 cut(s) | 118, 412 |
| BstDEI | CTNAG | 1 cut(s) | 282 |
| BstDSI | CCRYGG | 1 cut(s) | 429 |
| BstF5I | GGATG | 3 cut(s) | 292, 412, 454 |
| BstKTI | GATC | 1 cut(s) | 403 |
| BstMBI | GATC | 1 cut(s) | 400 |
| BstMCI | CGRYCG | 2 cut(s) | 294, 333 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 287 |
| BstSCI | CCNGG | 2 cut(s) | 8, 9 |
| BstV2I | GAAGAC | 1 cut(s) | 216 |
| BstZI | CGGCCG | 2 cut(s) | 291, 330 |
| BsuRI | GGCC | 3 cut(s) | 293, 332, 393 |
| BtgI | CCRYGG | 1 cut(s) | 429 |
| BtrI | CACGTC | 2 cut(s) | 163, 273 |
| BtsCI | GGATG | 3 cut(s) | 292, 412, 454 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| Cfr9I | CCCGGG | 1 cut(s) | 9 |
| CspAI | ACCGGT | 1 cut(s) | 51 |
| CviAII | CATG | 3 cut(s) | 380, 430, 445 |
| DdeI | CTNAG | 1 cut(s) | 282 |
| DpnI | GATC | 1 cut(s) | 402 |
| DpnII | GATC | 1 cut(s) | 400 |
| EaeI | YGGCCR | 3 cut(s) | 291, 330, 391 |
| EagI | CGGCCG | 2 cut(s) | 291, 330 |
| Eam1104I | CTCTTC | 2 cut(s) | 118, 412 |
| EarI | CTCTTC | 2 cut(s) | 118, 412 |
| Ecl136II | GAGCTC | 1 cut(s) | 128 |
| EclXI | CGGCCG | 2 cut(s) | 291, 330 |
| Eco130I | CCWWGG | 2 cut(s) | 83, 429 |
| Eco24I | GRGCYC | 2 cut(s) | 130, 329 |
| Eco52I | CGGCCG | 2 cut(s) | 291, 330 |
| Eco53kI | GAGCTC | 1 cut(s) | 128 |
| Eco88I | CYCGRG | 1 cut(s) | 9 |
| EcoICRI | GAGCTC | 1 cut(s) | 128 |
| EcoT14I | CCWWGG | 2 cut(s) | 83, 429 |
| EcoT38I | GRGCYC | 2 cut(s) | 130, 329 |
| ErhI | CCWWGG | 2 cut(s) | 83, 429 |
| FaeI | CATG | 3 cut(s) | 383, 433, 448 |
| FaiI | YATR | 6 cut(s) | 200, 215, 233, 381, 431, 446 |
| FatI | CATG | 3 cut(s) | 379, 429, 444 |
| FbaI | TGATCA | 1 cut(s) | 400 |
| Fnu4HI | GCNGC | 2 cut(s) | 291, 394 |
| FokI | GGATG | 3 cut(s) | 299, 399, 461 |
| FriOI | GRGCYC | 2 cut(s) | 130, 329 |
| Fsp4HI | GCNGC | 2 cut(s) | 291, 394 |
| FspBI | CTAG | 2 cut(s) | 254, 300 |
| GluI | GCNGC | 2 cut(s) | 291, 394 |
| GsuI | CTGGAG | 1 cut(s) | 297 |
| HaeIII | GGCC | 3 cut(s) | 293, 332, 393 |
| HapII | CCGG | 2 cut(s) | 10, 52 |
| Hin1II | CATG | 3 cut(s) | 383, 433, 448 |
| HinfI | GANTC | 2 cut(s) | 5, 184 |
| HpaII | CCGG | 2 cut(s) | 10, 52 |
| HphI | GGTGA | 3 cut(s) | 12, 147, 239 |
| Hpy166II | GTNNAC | 1 cut(s) | 20 |
| Hpy188I | TCNGA | 1 cut(s) | 367 |
| Hpy188III | TCNNGA | 4 cut(s) | 120, 181, 276, 419 |
| Hpy8I | GTNNAC | 1 cut(s) | 20 |
| HpyAV | CCTTC | 2 cut(s) | 136, 335 |
| HpyCH4III | ACNGT | 1 cut(s) | 363 |
| HpyCH4IV | ACGT | 2 cut(s) | 162, 272 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 1 cut(s) | 282 |
| HpySE526I | ACGT | 2 cut(s) | 162, 272 |
| Hsp92II | CATG | 3 cut(s) | 383, 433, 448 |
| Ksp22I | TGATCA | 1 cut(s) | 400 |
| Kzo9I | GATC | 1 cut(s) | 400 |
| LguI | GCTCTTC | 1 cut(s) | 118 |
| LmnI | GCTCC | 2 cut(s) | 278, 431 |
| LpnPI | CCDG | 7 cut(s) | 23, 65, 171, 173, 261, 363, 432 |
| LweI | GCATC | 3 cut(s) | 277, 295, 421 |
| MaeI | CTAG | 2 cut(s) | 254, 300 |
| MaeII | ACGT | 2 cut(s) | 162, 272 |
| MaeIII | GTNAC | 2 cut(s) | 153, 178 |
| MalI | GATC | 1 cut(s) | 402 |
| MboI | GATC | 1 cut(s) | 400 |
| MboII | GAAGA | 4 cut(s) | 54, 135, 221, 399 |
| MhlI | GDGCHC | 2 cut(s) | 130, 329 |
| MluCI | AATT | 2 cut(s) | 216, 438 |
| MnlI | CCTC | 6 cut(s) | 101, 106, 217, 277, 319, 426 |
| MseI | TTAA | 1 cut(s) | 113 |
| MspI | CCGG | 2 cut(s) | 10, 52 |
| MspR9I | CCNGG | 2 cut(s) | 10, 11 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 287 |
| NciI | CCSGG | 2 cut(s) | 10, 11 |
| NcoI | CCATGG | 1 cut(s) | 429 |
| NdeII | GATC | 1 cut(s) | 400 |
| NlaIII | CATG | 3 cut(s) | 383, 433, 448 |
| NmeAIII | GCCGAG | 1 cut(s) | 308 |
| NmuCI | GTSAC | 2 cut(s) | 153, 178 |
| PciSI | GCTCTTC | 1 cut(s) | 118 |
| PfeI | GAWTC | 2 cut(s) | 5, 184 |
| PinAI | ACCGGT | 1 cut(s) | 51 |
| PkrI | GCNGC | 2 cut(s) | 292, 395 |
| Psp124BI | GAGCTC | 1 cut(s) | 130 |
| SacI | GAGCTC | 1 cut(s) | 130 |
| SapI | GCTCTTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 1 cut(s) | 113 |
| SatI | GCNGC | 2 cut(s) | 291, 394 |
| Sau3AI | GATC | 1 cut(s) | 400 |
| ScrFI | CCNGG | 2 cut(s) | 10, 11 |
| SduI | GDGCHC | 2 cut(s) | 130, 329 |
| SfaNI | GCATC | 3 cut(s) | 277, 295, 421 |
| SmaI | CCCGGG | 1 cut(s) | 11 |
| SpeI | ACTAGT | 1 cut(s) | 299 |
| Sse9I | AATT | 2 cut(s) | 216, 438 |
| SsiI | CCGC | 2 cut(s) | 290, 394 |
| SspMI | CTAG | 2 cut(s) | 254, 300 |
| SstI | GAGCTC | 1 cut(s) | 130 |
| StyD4I | CCNGG | 2 cut(s) | 8, 9 |
| StyI | CCWWGG | 2 cut(s) | 83, 429 |
| TaaI | ACNGT | 1 cut(s) | 363 |
| TaiI | ACGT | 2 cut(s) | 165, 275 |
| TaqI | TCGA | 2 cut(s) | 64, 222 |
| TaqII | GACCGA | 1 cut(s) | 166 |
| TasI | AATT | 2 cut(s) | 216, 438 |
| TauI | GCSGC | 2 cut(s) | 293, 396 |
| TfiI | GAWTC | 2 cut(s) | 5, 184 |
| Tru1I | TTAA | 1 cut(s) | 113 |
| Tru9I | TTAA | 1 cut(s) | 113 |
| TseFI | GTSAC | 2 cut(s) | 153, 178 |
| Tsp45I | GTSAC | 2 cut(s) | 153, 178 |
| TspMI | CCCGGG | 1 cut(s) | 9 |
| XmaI | CCCGGG | 1 cut(s) | 9 |
| XspI | CTAG | 2 cut(s) | 254, 300 |