Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000063

Physical Location & Seq

Genomic Coordinates Forward (+)

58388115 .. 58392142

Gene Structure 4028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGGTCGACGATGCTTCAGAACTCGAGATTGGGTCGGAGGGTAGTGACGCAATTGAAACTAAATCGGCCAAGTTTGCAACCGAATTTAAGAAGTCTCTTGATGCTTCCAAAGGTACACTTCAAGGCTCTGTGGTCTGCCGGTTGACAAAGAAAAATGAACCGCAAGGGGAATGCATACTAGGGCCGCATTATCGCGCGGGCATGCCATCGGCCGTTAATGAAGTATTAGAGAGTTCGTTAGTTGACACATCTTGTTTGGGTCATGGGTCTAGTTGGTCCACCTGGAGCACTGAGTTGAAGCACCCGCGAGTCTGGCCGAAACTGACACCTGAATGGACGAAGTGGGTGCCAAGGATGGAGCACTTCTTCAGCCAAGAGTGGAAGAGGTATGGAATTTATGACAGCATAAAAATGACTGAACAAGAGATTCACATGGACCGGCCTCTTCTTGCGGCTGCCTTGTGTTTTTGGTCGTCTGCTACCAACACCATGAACTTGCACCTTGGGCCAATGACTCCAACCTTGTTAGACATGGCGGCGATATTTGGGTTTCGGCCGAATGGGGTGGAGATTTGTGCATCGGCCGAATTCCCATCATCTTTTCATGCTAGTATGAAACCTCAAGTGATCAAGGACGATAAGAAAGCTAAAGAAGATGCGGACGTCAGAACAAAGAAATTGCTTAACTACAGTACCTTTTATGCTGAACATGCAGTGAATGAAAGTGTGTCAGAAACTAAGAGAAAACCGCCCAAACAATATGAACACGCTGCCTTTCTCCTCTATTGGCTTTGCAAGTTTGTGTTTTGTTGCAAGTCGAACAAGTGTATTTTCGAGTTCGCTGGAATTGCGGAAGCTCTTAGTTTGGGTACTCCTCTAGCCCTTGGCCCATTTGTTCTTGCTTATATGTATCGTACCTTGCGCAACATAGTGGCTTGTAACATGAACTTGGACATCGGAGGACCACTTTGGATGTTTCAAGTGTGGTTGCAAACTTATTTTCGTGAACTTCGGCCATCATGCCCTCCTTTTGATTCGACAACGACTCTTGGGCGACAGATTGCATCTCTTGGTCCTCGTTCTCATTCGGTCGGTGAGTGTTTTGATTTCTTTTTTTTGAAAAGAAGTATGTCCAAAGACGAGTTCGCCATCTGTTACAGCCGAGACTATCCTTCTTGTCTGGCAATTGACATAGCCAAAACGTGGGAGAAAACCTTGGATTTGGATGTGATGCTGCCTTGGGGAAGTATTTTGATATCTCGGGATCTAAATTATGGCCTTAAAGGTACTTTGGGTCGGCCAGGTGTTGAGGTTTATCTACCCAACTTCGTTGCGCGTCAACTTGGTTTTATACAAAGTTGTCCAGCCTTATTCCTGATGTCGCAGAACCGCTTCTCCTCATGGAGAGACAGATTTACAGACACCCAGCAGTGTTTGGCTGTTACTCTCTACTACCAGACTCAGTTTGGCAATTTTGAGAGGTCTGGTCTTGAATCTCGTCTTCCTGACCATAGGGCTACCCCAGATTTCCAAACTTGGTGGTCAACTTTTATCAAGAGAAATATCGGTGAAGATCTGATTGAGACCAAACGGGTCGCCTTGCAGGGGCTCTTAGTTTCGTTTGTACCAAAAAAATGCGATAATAGAAAGAAAGTATCGAATTCCAAGCTGAAGACAACTAGAGAGCCCTCTAAGCAAGGAAAATCAGTGAGGAAACGTGCCTCAACATCTAGGTCAGCACCAGCTACCAAGAAGTCAAAAGACTCATCTGATGTAGCGGAGAATTCGCTCGCGAATCCGACCAATATCTTGGCTAGAGAGGATACATTTTTTGAGGCTAACATGGAGGATGACCAGAATGCTTCAAACGAACAACAGAATGTGTCTGAAAATGAGGATGTGTCTGGTATTGGTGAGGGGTCAACCGATGGCATGGAGTTGGCTGACAGCGAAAGTTTTTTTGAAGAAAATCCCTTAGAGAACGATGAGTATGAGAGAGATGGCCGTATTGATCACTCTTTGCCTCCTCCTGAGAGCTCCCTGGTTGAAATTGACATGGACGATTTGGGTGAGACTCAACTCCCTATTGTTTCTTGCATCGGCCAACAACTAGCCAACTTTGCCCAGGATGCTGAAGGTACCGGTGCAGTTAGCCGAGAAGTGTTGCCTAACCTCCAAACACTTGTCCAGGTAGGAGAACTTCAAAGTAGTATGACTTTGGAACTCACTCTGCTCAACCAAAATGAAGCACACCCTCCTCTGTTTGGTATACTCACTTCTCCTCCAACCGAAGGAATGTCGCACAGTGAGCAAGCTGTCGTTTGTGCTCCAACCTCAGCCGAACTTATGGTGAGTACCATAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

789

Amino Acids

88.34

Weight (kDa)

5.35

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	131 - 341	3.8e-37	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica	MD05G1017000.v1.1
prunus_persica	Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis	pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis	RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata	RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora	Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii	Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa	Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha	Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana	Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	666
Acc16I	TGCGCA	1 cut(s)	923
Acc65I	GGTACC	1 cut(s)	2138
AccB1I	GGYRCC	2 cut(s)	346, 2138
AccB7I	CCANNNNNTGG	1 cut(s)	1203
AccI	GTMKAC	2 cut(s)	6, 2269
AccII	CGCG	5 cut(s)	195, 197, 307, 1336, 1793
AclWI	GGATC	1 cut(s)	1272
AcoI	YGGCCR	9 cut(s)	66, 210, 314, 554, 582, 1013, 1298, 2002, 2101
AcsI	RAATTY	5 cut(s)	83, 393, 587, 1660, 1783
AcuI	CTGAAG	3 cut(s)	352, 1691, 2154
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	8 cut(s)	115, 694, 871, 916, 1288, 1626, 2140, 2356
AfiI	CCNNNNNNNGG	4 cut(s)	1203, 1605, 2264, 2291
AgeI	ACCGGT	1 cut(s)	2141
AjnI	CCWGG	5 cut(s)	281, 1300, 2040, 2124, 2187
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 1127, 1159
AloI	GAACNNNNNNTCC	2 cut(s)	1379, 1411
AluBI	AGCT	6 cut(s)	647, 857, 1669, 1745, 2037, 2315
AluI	AGCT	6 cut(s)	647, 857, 1669, 1745, 2037, 2315
Alw21I	GWGCWC	4 cut(s)	290, 363, 2039, 2329
Alw26I	GTCTC	5 cut(s)	99, 1158, 1401, 1577, 2066
AlwI	GGATC	1 cut(s)	1272
Ama87I	CYCGRG	2 cut(s)	23, 1260
ApeKI	GCWGC	3 cut(s)	455, 770, 1234
ApoI	RAATTY	5 cut(s)	83, 393, 587, 1660, 1783
AsiGI	ACCGGT	1 cut(s)	2141
Asp700I	GAANNNNTTC	1 cut(s)	1391
Asp718I	GGTACC	1 cut(s)	2138
AspLEI	GCGC	3 cut(s)	197, 924, 1336
AspS9I	GGNCC	7 cut(s)	182, 276, 436, 506, 887, 962, 1073
AsuHPI	GGTGA	5 cut(s)	1106, 1580, 1925, 2081, 2362
AvaI	CYCGRG	2 cut(s)	23, 1260
AvaII	GGWCC	4 cut(s)	276, 436, 962, 1073
BaeI	ACNNNNGTAYC	2 cut(s)	676, 709
BanI	GGYRCC	2 cut(s)	346, 2138
BanII	GRGCYC	3 cut(s)	1611, 1689, 2039
BarI	GAAGNNNNNNTAC	4 cut(s)	2184, 2216, 2260, 2292
BbsI	GAAGAC	2 cut(s)	1493, 1679
Bbv12I	GWGCWC	4 cut(s)	290, 363, 2039, 2329
BbvCI	CCTCAGC	1 cut(s)	2335
BbvI	GCAGC	3 cut(s)	442, 757, 1221
BccI	CCATC	7 cut(s)	214, 349, 601, 1024, 1157, 1922, 1994
BceAI	ACGGC	2 cut(s)	197, 1989
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	5 cut(s)	283, 1302, 2042, 2126, 2189
BciVI	GTATCC	1 cut(s)	1816
BclI	TGATCA	2 cut(s)	627, 2011
BcoDI	GTCTC	5 cut(s)	99, 1158, 1401, 1577, 2066
BfaI	CTAG	8 cut(s)	179, 270, 609, 878, 1680, 1731, 1815, 2111
BfmI	CTRYAG	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	1816
BglII	AGATCT	1 cut(s)	1573
BisI	GCNGC	6 cut(s)	185, 453, 456, 537, 771, 1235
BlsI	GCNGC	6 cut(s)	186, 454, 457, 538, 772, 1236
Bme1390I	CCNGG	5 cut(s)	283, 1302, 2042, 2126, 2189
Bme18I	GGWCC	4 cut(s)	276, 436, 962, 1073
BmeT110I	CYCGRG	2 cut(s)	23, 1260
BmgT120I	GGNCC	7 cut(s)	182, 276, 436, 506, 887, 962, 1073
BmiI	GGNNCC	2 cut(s)	348, 2140
BmrFI	CCNGG	5 cut(s)	283, 1302, 2042, 2126, 2189
BmsI	GCATC	7 cut(s)	91, 587, 646, 1073, 1221, 2106, 2119
BpiI	GAAGAC	2 cut(s)	1493, 1679
BpmI	CTGGAG	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	2335
BpuEI	CTTGAG	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	1577
BsaJI	CCNNGG	7 cut(s)	350, 502, 883, 1215, 1238, 2040, 2124
BsaWI	WCCGGW	1 cut(s)	2141
BsaXI	ACNNNNNCTCC	4 cut(s)	1379, 1409, 2266, 2296
Bsc4I	CCNNNNNNNGG	4 cut(s)	1203, 1605, 2264, 2291
Bse118I	RCCGGY	3 cut(s)	138, 438, 2141
BseBI	CCWGG	5 cut(s)	283, 1302, 2042, 2126, 2189
BseDI	CCNNGG	7 cut(s)	350, 502, 883, 1215, 1238, 2040, 2124
BseGI	GGATG	6 cut(s)	360, 978, 1231, 1855, 1903, 2134
BseLI	CCNNNNNNNGG	4 cut(s)	1203, 1605, 2264, 2291
BseMII	CTCAG	4 cut(s)	282, 1475, 2022, 2349
BseRI	GAGGAG	6 cut(s)	770, 864, 1387, 2016, 2247, 2271
BseX3I	CGGCCG	3 cut(s)	210, 554, 582
BseXI	GCAGC	3 cut(s)	442, 757, 1221
BseYI	CCCAGC	1 cut(s)	1425
BsgI	GTGCAG	1 cut(s)	2166
Bsh1236I	CGCG	5 cut(s)	195, 197, 307, 1336, 1793
Bsh1285I	CGRYCG	4 cut(s)	213, 557, 585, 1092
BshNI	GGYRCC	2 cut(s)	346, 2138
BshTI	ACCGGT	1 cut(s)	2141
BsiEI	CGRYCG	4 cut(s)	213, 557, 585, 1092
BsiHKAI	GWGCWC	4 cut(s)	290, 363, 2039, 2329
BsiHKCI	CYCGRG	2 cut(s)	23, 1260
BsiSI	CCGG	3 cut(s)	139, 439, 2142
BslI	CCNNNNNNNGG	4 cut(s)	1203, 1605, 2264, 2291
BsmAI	GTCTC	5 cut(s)	99, 1158, 1401, 1577, 2066
BsmI	GAATGC	2 cut(s)	176, 1864
Bso31I	GGTCTC	1 cut(s)	1577
BsoBI	CYCGRG	2 cut(s)	23, 1260
Bsp1286I	GDGCHC	6 cut(s)	290, 363, 1611, 1689, 2039, 2329
Bsp143I	GATC	4 cut(s)	627, 1264, 1573, 2011
Bsp68I	TCGCGA	1 cut(s)	1793
BspCNI	CTCAG	4 cut(s)	283, 1474, 2023, 2348
BspFNI	CGCG	5 cut(s)	195, 197, 307, 1336, 1793
BspLI	GGNNCC	2 cut(s)	348, 2140
BspPI	GGATC	1 cut(s)	1272
BspT107I	GGYRCC	2 cut(s)	346, 2138
BspTNI	GGTCTC	1 cut(s)	1577
BsrFI	RCCGGY	3 cut(s)	138, 438, 2141
BssAI	RCCGGY	3 cut(s)	138, 438, 2141
BssECI	CCNNGG	7 cut(s)	350, 502, 883, 1215, 1238, 2040, 2124
BssMI	GATC	4 cut(s)	627, 1264, 1573, 2011
BssNAI	GTATAC	1 cut(s)	2270
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	5 cut(s)	350, 502, 883, 1215, 1238
Bst1107I	GTATAC	1 cut(s)	2270
Bst2UI	CCWGG	5 cut(s)	283, 1302, 2042, 2126, 2189
Bst4CI	ACNGT	2 cut(s)	692, 2306
Bst6I	CTCTTC	2 cut(s)	377, 450
BstACI	GRCGYC	1 cut(s)	663
BstC8I	GCNNGC	4 cut(s)	199, 203, 1791, 2313
BstDEI	CTNAG	9 cut(s)	291, 738, 860, 1461, 1612, 1692, 1975, 2031, 2335
BstF5I	GGATG	6 cut(s)	360, 978, 1231, 1855, 1903, 2134
BstFNI	CGCG	5 cut(s)	195, 197, 307, 1336, 1793
BstHHI	GCGC	3 cut(s)	197, 924, 1336
BstKTI	GATC	4 cut(s)	630, 1267, 1576, 2014
BstMAI	GTCTC	5 cut(s)	99, 1158, 1401, 1577, 2066
BstMBI	GATC	4 cut(s)	627, 1264, 1573, 2011
BstMCI	CGRYCG	4 cut(s)	213, 557, 585, 1092
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 313, 505, 710, 848, 1693, 2120, 2129, 2308
BstNI	CCWGG	5 cut(s)	283, 1302, 2042, 2126, 2189
BstNSI	RCATGY	2 cut(s)	205, 713
BstSCI	CCNGG	5 cut(s)	281, 1300, 2040, 2124, 2187
BstSFI	CTRYAG	1 cut(s)	688
BstUI	CGCG	5 cut(s)	195, 197, 307, 1336, 1793
BstV1I	GCAGC	3 cut(s)	442, 757, 1221
BstV2I	GAAGAC	2 cut(s)	1493, 1679
BstX2I	RGATCY	2 cut(s)	1264, 1573
BstXI	CCANNNNNNTGG	1 cut(s)	1810
BstYI	RGATCY	2 cut(s)	1264, 1573
BstZ17I	GTATAC	1 cut(s)	2270
BstZI	CGGCCG	3 cut(s)	210, 554, 582
BsuI	GTATCC	1 cut(s)	1816
BtsCI	GGATG	6 cut(s)	360, 978, 1231, 1855, 1903, 2134
BtsI	GCAGTG	2 cut(s)	720, 1436
BtsIMutI	CAGTG	5 cut(s)	288, 720, 1436, 1713, 2311
BtuMI	TCGCGA	1 cut(s)	1793
Cac8I	GCNNGC	4 cut(s)	199, 203, 1791, 2313
CfoI	GCGC	3 cut(s)	197, 924, 1336
Cfr10I	RCCGGY	3 cut(s)	138, 438, 2141
Cfr13I	GGNCC	7 cut(s)	182, 276, 436, 506, 887, 962, 1073
CseI	GACGC	2 cut(s)	56, 1325
Csp6I	GTAC	8 cut(s)	114, 693, 870, 915, 1287, 1625, 2139, 2355
CspAI	ACCGGT	1 cut(s)	2141
CspCI	CAANNNNNGTGG	2 cut(s)	1520, 1555
CviQI	GTAC	8 cut(s)	114, 693, 870, 915, 1287, 1625, 2139, 2355
DdeI	CTNAG	9 cut(s)	291, 738, 860, 1461, 1612, 1692, 1975, 2031, 2335
DpnI	GATC	4 cut(s)	629, 1266, 1575, 2013
DpnII	GATC	4 cut(s)	627, 1264, 1573, 2011
EaeI	YGGCCR	9 cut(s)	66, 210, 314, 554, 582, 1013, 1298, 2002, 2101
EagI	CGGCCG	3 cut(s)	210, 554, 582
Eam1104I	CTCTTC	2 cut(s)	377, 450
EarI	CTCTTC	2 cut(s)	377, 450
Ecl136II	GAGCTC	1 cut(s)	2037
EclXI	CGGCCG	3 cut(s)	210, 554, 582
Eco130I	CCWWGG	5 cut(s)	350, 502, 883, 1215, 1238
Eco24I	GRGCYC	3 cut(s)	1611, 1689, 2039
Eco31I	GGTCTC	1 cut(s)	1577
Eco32I	GATATC	1 cut(s)	1257
Eco47I	GGWCC	4 cut(s)	276, 436, 962, 1073
Eco52I	CGGCCG	3 cut(s)	210, 554, 582
Eco53kI	GAGCTC	1 cut(s)	2037
Eco57I	CTGAAG	3 cut(s)	352, 1691, 2154
Eco88I	CYCGRG	2 cut(s)	23, 1260
EcoICRI	GAGCTC	1 cut(s)	2037
EcoRI	GAATTC	3 cut(s)	587, 1660, 1783
EcoRII	CCWGG	5 cut(s)	281, 1300, 2040, 2124, 2187
EcoRV	GATATC	1 cut(s)	1257
EcoT14I	CCWWGG	5 cut(s)	350, 502, 883, 1215, 1238
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	3 cut(s)	1611, 1689, 2039
ErhI	CCWWGG	5 cut(s)	350, 502, 883, 1215, 1238
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FauI	CCCGC	2 cut(s)	190, 312
FbaI	TGATCA	2 cut(s)	627, 2011
FblI	GTMKAC	2 cut(s)	6, 2269
Fnu4HI	GCNGC	6 cut(s)	185, 453, 456, 537, 771, 1235
FokI	GGATG	6 cut(s)	367, 985, 1238, 1862, 1910, 2141
FriOI	GRGCYC	3 cut(s)	1611, 1689, 2039
Fsp4HI	GCNGC	6 cut(s)	185, 453, 456, 537, 771, 1235
FspBI	CTAG	8 cut(s)	179, 270, 609, 878, 1680, 1731, 1815, 2111
FspI	TGCGCA	1 cut(s)	923
GlaI	GCGC	3 cut(s)	196, 923, 1335
GluI	GCNGC	6 cut(s)	185, 453, 456, 537, 771, 1235
GsaI	CCCAGC	1 cut(s)	1429
GsuI	CTGGAG	1 cut(s)	304
HapII	CCGG	3 cut(s)	139, 439, 2142
HgaI	GACGC	2 cut(s)	56, 1325
HhaI	GCGC	3 cut(s)	197, 924, 1336
Hin1I	GRCGYC	1 cut(s)	663
Hin6I	GCGC	3 cut(s)	195, 922, 1334
HinP1I	GCGC	3 cut(s)	195, 922, 1334
HincII	GTYRAC	6 cut(s)	7, 144, 244, 1340, 1545, 1923
HindII	GTYRAC	6 cut(s)	7, 144, 244, 1340, 1545, 1923
HpaII	CCGG	3 cut(s)	139, 439, 2142
HphI	GGTGA	5 cut(s)	1106, 1580, 1925, 2081, 2362
Hpy188I	TCNGA	9 cut(s)	19, 37, 668, 733, 959, 1578, 1771, 1800, 1888
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	1182, 2129, 2285
HpyCH4III	ACNGT	2 cut(s)	692, 2306
HpyCH4IV	ACGT	3 cut(s)	663, 1202, 1717
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 313, 505, 710, 848, 1693, 2120, 2129, 2308
HpyF3I	CTNAG	9 cut(s)	291, 738, 860, 1461, 1612, 1692, 1975, 2031, 2335
HpySE526I	ACGT	3 cut(s)	663, 1202, 1717
Hsp92I	GRCGYC	1 cut(s)	663
HspAI	GCGC	3 cut(s)	195, 922, 1334
KpnI	GGTACC	1 cut(s)	2142
Ksp22I	TGATCA	2 cut(s)	627, 2011
Kzo9I	GATC	4 cut(s)	627, 1264, 1573, 2011
LmnI	GCTCC	4 cut(s)	285, 358, 2042, 2332
Lsp1109I	GCAGC	3 cut(s)	442, 757, 1221
LweI	GCATC	7 cut(s)	91, 587, 646, 1073, 1221, 2106, 2119
MaeI	CTAG	8 cut(s)	179, 270, 609, 878, 1680, 1731, 1815, 2111
MaeII	ACGT	3 cut(s)	663, 1202, 1717
MaeIII	GTNAC	4 cut(s)	44, 938, 1154, 1441
MalI	GATC	4 cut(s)	629, 1266, 1575, 2013
MboI	GATC	4 cut(s)	627, 1264, 1573, 2011
MboII	GAAGA	8 cut(s)	358, 394, 437, 665, 1493, 1583, 1684, 1976
MfeI	CAATTG	2 cut(s)	51, 1185
MflI	RGATCY	2 cut(s)	1264, 1573
MhlI	GDGCHC	6 cut(s)	290, 363, 1611, 1689, 2039, 2329
MlyI	GAGTC	6 cut(s)	318, 508, 1039, 1453, 1757, 2068
MmeI	TCCRAC	5 cut(s)	15, 542, 1823, 2309, 2354
Mph1103I	ATGCAT	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	1391
MseI	TTAA	4 cut(s)	87, 216, 684, 1281
MslI	CAYNNNNRTG	2 cut(s)	331, 410
MspI	CCGG	3 cut(s)	139, 439, 2142
MspR9I	CCNGG	5 cut(s)	283, 1302, 2042, 2126, 2189
MunI	CAATTG	2 cut(s)	51, 1185
Mva1269I	GAATGC	2 cut(s)	176, 1864
MvaI	CCWGG	5 cut(s)	283, 1302, 2042, 2126, 2189
MvnI	CGCG	5 cut(s)	195, 197, 307, 1336, 1793
MwoI	GCNNNNNNNGC	9 cut(s)	74, 313, 505, 710, 848, 1693, 2120, 2129, 2308
NdeII	GATC	4 cut(s)	627, 1264, 1573, 2011
NlaIV	GGNNCC	2 cut(s)	348, 2140
NmeAIII	GCCGAG	2 cut(s)	1187, 2180
NmuCI	GTSAC	1 cut(s)	44
NruI	TCGCGA	1 cut(s)	1793
NsbI	TGCGCA	1 cut(s)	923
NsiI	ATGCAT	1 cut(s)	176
NspI	RCATGY	2 cut(s)	205, 713
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	23
PctI	GAATGC	2 cut(s)	176, 1864
PdmI	GAANNNNTTC	1 cut(s)	1391
PfeI	GAWTC	4 cut(s)	427, 1034, 1493, 1795
PflMI	CCANNNNNTGG	1 cut(s)	1203
PinAI	ACCGGT	1 cut(s)	2141
PkrI	GCNGC	6 cut(s)	186, 454, 457, 538, 772, 1236
PleI	GAGTC	6 cut(s)	317, 508, 1039, 1453, 1757, 2068
PpsI	GAGTC	6 cut(s)	317, 508, 1039, 1453, 1757, 2068
Psp124BI	GAGCTC	1 cut(s)	2039
Psp6I	CCWGG	5 cut(s)	281, 1300, 2040, 2124, 2187
PspFI	CCCAGC	1 cut(s)	1425
PspGI	CCWGG	5 cut(s)	281, 1300, 2040, 2124, 2187
PspN4I	GGNNCC	2 cut(s)	348, 2140
PspPI	GGNCC	7 cut(s)	182, 276, 436, 506, 887, 962, 1073
PsuI	RGATCY	2 cut(s)	1264, 1573
RruI	TCGCGA	1 cut(s)	1793
RsaI	GTAC	8 cut(s)	115, 694, 871, 916, 1288, 1626, 2140, 2356
RsaNI	GTAC	8 cut(s)	114, 693, 870, 915, 1287, 1625, 2139, 2355
RseI	CAYNNNNRTG	2 cut(s)	331, 410
SacI	GAGCTC	1 cut(s)	2039
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	4 cut(s)	87, 216, 684, 1281
SatI	GCNGC	6 cut(s)	185, 453, 456, 537, 771, 1235
Sau3AI	GATC	4 cut(s)	627, 1264, 1573, 2011
Sau96I	GGNCC	7 cut(s)	182, 276, 436, 506, 887, 962, 1073
SchI	GAGTC	6 cut(s)	318, 508, 1039, 1453, 1757, 2068
ScrFI	CCNGG	5 cut(s)	283, 1302, 2042, 2126, 2189
SduI	GDGCHC	6 cut(s)	290, 363, 1611, 1689, 2039, 2329
SfaNI	GCATC	7 cut(s)	91, 587, 646, 1073, 1221, 2106, 2119
SfcI	CTRYAG	1 cut(s)	688
Sfr274I	CTCGAG	1 cut(s)	23
SinI	GGWCC	4 cut(s)	276, 436, 962, 1073
SlaI	CTCGAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	331, 410
SmlI	CTYRAG	2 cut(s)	23, 621
SmoI	CTYRAG	2 cut(s)	23, 621
SphI	GCATGC	1 cut(s)	205
SspMI	CTAG	8 cut(s)	179, 270, 609, 878, 1680, 1731, 1815, 2111
SstI	GAGCTC	1 cut(s)	2039
StyD4I	CCNGG	5 cut(s)	281, 1300, 2040, 2124, 2187
StyI	CCWWGG	5 cut(s)	350, 502, 883, 1215, 1238
TaaI	ACNGT	2 cut(s)	692, 2306
TaiI	ACGT	3 cut(s)	666, 1205, 1720
TaqI	TCGA	6 cut(s)	6, 24, 818, 834, 1037, 1658
TaqII	GACCGA	1 cut(s)	1078
TauI	GCSGC	3 cut(s)	187, 455, 539
TfiI	GAWTC	4 cut(s)	427, 1034, 1493, 1795
Tru1I	TTAA	4 cut(s)	87, 216, 684, 1281
Tru9I	TTAA	4 cut(s)	87, 216, 684, 1281
TscAI	CASTG	5 cut(s)	295, 720, 1436, 1713, 2311
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	3 cut(s)	455, 770, 1234
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	9 cut(s)	171, 234, 506, 593, 629, 735, 777, 959, 2259
TspRI	CASTG	5 cut(s)	295, 720, 1436, 1713, 2311
Van91I	CCANNNNNTGG	1 cut(s)	1203
VpaK11BI	GGWCC	4 cut(s)	276, 436, 962, 1073
XapI	RAATTY	5 cut(s)	83, 393, 587, 1660, 1783
XceI	RCATGY	2 cut(s)	205, 713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1463
XhoI	CTCGAG	1 cut(s)	23
XmiI	GTMKAC	2 cut(s)	6, 2269
XmnI	GAANNNNTTC	1 cut(s)	1391
XspI	CTAG	8 cut(s)	179, 270, 609, 878, 1680, 1731, 1815, 2111
ZraI	GACGTC	1 cut(s)	664
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.