Rh5DG125200

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000063
Physical Location & Seq
Forward (+)
11329806 .. 11331242
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG125200.1

Sequence Viewer

Length: 1437 bp
ATGGCGGAACTGTCCAAACTGACCGCACTGCGGTTCAAAAACAAAATGGACGACATTACTAACCATCTGGATCGCACGTACAGTGCAACAGATTCGGTGATTTCTGTTAGTTGTGACGAAAGAGTCGAGCTTGGTCCTTGTTGGCCTAAGCTTCCCCCTGCTTCTGTTCAAGACTTACTCAAGGATGAGCCTTCAAGACTTGTTCCGGTCCACTGTCGTCGAGGTGAAGAAATTTCATGGAATGATTGGTCGGATAAGCCATTCCCAAGTTGGCCAACCCACGATGAAGCCTGGACCACCTGGGTCGCAAAGATGCTTCCTTATTACGGTGATCACTGGAAGAAGGCCAACATAATGCTCTCCGCCAGGCGCTTCTTCCCCGACAAGGCTCTCCTCAGCGCTGCGTTTTGCTTTTGGAACTCATCATCCAACACTATGGACTTGCCTCTCGGGATGATGAGTGTGAGTCTGCTTGACGTTGCTGCCATTGCTGGGTTTAGGCCTCATGGCACCGCTTATGACTGCACTGCTCCGTTGAAGCCCAAAACCAAGTTTAGGTGTGGTCGGCACTTCGAATATGGAAGTTGGATAGACTATCATAATAGTGACAAATGCAACAAAGTTGTCGATCAAGAGCACATAGCGTTCCTCCTCTACTGGCTCTGTAGGTATGTCTTCTGTGTATCTTCAGGGATTAGTAAAGAGTGGTCTCATTTGGCAGAAGTTTTGCATCGAGGAACTGATGTGGCCTTAGGTGAGTTGGTGCTAGCCTCACTGTACAGGGGTTTACAGAAAATCACTGTCAACCCGTTTGATGGTAAAGCTGAGGGGCCACTTTGGCTGTTCCAAATGTGGTTACAGATTTACTTCCCAGACCTAGGCCCGGTTAGTGCATTTCCTGCCGATGAGGTTATGGGGGTTAGGTTGACAGACCAAGTCCCAAAACCACACTCCCCTCGTGATTGCTTTGCAACGTTGTGGAGTTTGAAATCAAACCCATGTTGGACGCACACCTTGACGAGAAGGTATCCCGGTTTCCTAAGGAATAGGTTCATGGATGGTCCAACCTCTGATGGTGCCTTAGATGAGGAAATACAAGCTGTGCTAACGAGTGTGGTGGTGCAGAGAGATCTGCTGTATGGAGGGATGAAAAATGGTAGATATTATGGAGTCCAGGCCGAGTTTTATGGCCCGAACCATTTCAGTAGGCAGTTTGGTTGCCTACAAGGAATTCCTCACTCTGGTCATAAAAGCGTTAATTGTTATACCTCATGGAGGGATGTACTAAAAGATGCTGCGGAAATCAGAGGCGTGTTAAATTCCAGTCGTTCCACAAAGTTGAAACCATTCCTCACCAGGTATGTGCTAACCTCTGAAACTACCCCAGGCTTTGACAAATGGTGGCATAGTCAAACCAAAGATCGATTTTCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

478

Amino Acids

54.54

Weight (kDa)

8.32

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 118 - 438 3.7e-30 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 509, 1076
AciI CCGC 6 cut(s) 5, 24, 31, 363, 513, 1298
AclI AACGTT 1 cut(s) 974
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 3 cut(s) 231, 1230, 1318
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 3 cut(s) 80, 779, 1284
AfeI AGCGCT 1 cut(s) 400
AgsI TTSAA 6 cut(s) 37, 170, 195, 538, 988, 1342
AjnI CCWGG 6 cut(s) 290, 299, 365, 1173, 1355, 1384
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 4 cut(s) 130, 151, 824, 1100
AluI AGCT 4 cut(s) 130, 151, 824, 1100
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 1 cut(s) 714
AlwI GGATC 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 449
Aor51HI AGCGCT 1 cut(s) 400
AoxI GGCC 9 cut(s) 143, 272, 345, 500, 747, 830, 880, 1176, 1189
ApeKI GCWGC 3 cut(s) 401, 482, 1295
ApoI RAATTY 3 cut(s) 231, 1230, 1318
Asp700I GAANNNNTTC 3 cut(s) 1049, 1199, 1346
AspA2I CCTAGG 1 cut(s) 877
AspLEI GCGC 2 cut(s) 372, 401
AspS9I GGNCC 7 cut(s) 134, 208, 294, 830, 881, 1061, 1190
AsuC2I CCSGG 2 cut(s) 884, 1032
AsuHPI GGTGA 5 cut(s) 109, 236, 341, 767, 1345
AsuII TTCGAA 1 cut(s) 573
AsuNHI GCTAGC 1 cut(s) 766
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 4 cut(s) 134, 208, 294, 1061
AvrII CCTAGG 1 cut(s) 877
AxyI CCTNAGG 2 cut(s) 751, 1040
BalI TGGCCA 1 cut(s) 274
BanI GGYRCC 2 cut(s) 509, 1076
BauI CACGAG 1 cut(s) 957
BbsI GAAGAC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 639
BbvCI CCTCAGC 2 cut(s) 395, 825
BbvI GCAGC 3 cut(s) 388, 469, 1282
BccI CCATC 4 cut(s) 72, 809, 1052, 1067
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 6 cut(s) 292, 301, 367, 1175, 1357, 1386
BciVI GTATCC 1 cut(s) 1038
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 2 cut(s) 884, 1032
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 2 cut(s) 767, 878
BfmI CTRYAG 1 cut(s) 664
BfoI RGCGCY 2 cut(s) 373, 402
BfuI GTATCC 1 cut(s) 1038
BglI GCCNNNNNGGC 1 cut(s) 838
BglII AGATCT 1 cut(s) 1129
BisI GCNGC 3 cut(s) 402, 483, 1296
BlnI CCTAGG 1 cut(s) 877
BlsI GCNGC 3 cut(s) 403, 484, 1297
Bme1390I CCNGG 8 cut(s) 292, 301, 367, 884, 1032, 1175, 1357, 1386
Bme18I GGWCC 4 cut(s) 134, 208, 294, 1061
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 7 cut(s) 134, 208, 294, 830, 881, 1061, 1190
BmiI GGNNCC 3 cut(s) 511, 831, 1078
BmrFI CCNGG 8 cut(s) 292, 301, 367, 884, 1032, 1175, 1357, 1386
BmsI GCATC 3 cut(s) 303, 739, 1282
BmtI GCTAGC 1 cut(s) 770
BpiI GAAGAC 1 cut(s) 667
Bpu10I CCTNAGC 3 cut(s) 147, 395, 825
Bpu14I TTCGAA 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 884, 1032
Bsa29I ATCGAT 1 cut(s) 1423
BsaAI YACGTR 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 3 cut(s) 300, 877, 1384
BsaWI WCCGGW 1 cut(s) 205
Bse1I ACTGG 3 cut(s) 341, 662, 1323
Bse21I CCTNAGG 2 cut(s) 751, 1040
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 6 cut(s) 292, 301, 367, 1175, 1357, 1386
BseCI ATCGAT 1 cut(s) 1423
BseDI CCNNGG 3 cut(s) 300, 877, 1384
BseGI GGATG 6 cut(s) 190, 425, 459, 1063, 1152, 1285
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 409, 816
BseNI ACTGG 3 cut(s) 341, 662, 1323
BseRI GAGGAG 2 cut(s) 383, 641
BseXI GCAGC 3 cut(s) 388, 469, 1282
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 2 cut(s) 508, 1142
BshFI GGCC 9 cut(s) 145, 274, 347, 502, 749, 832, 882, 1178, 1191
BshNI GGYRCC 2 cut(s) 509, 1076
BshVI ATCGAT 1 cut(s) 1423
BsiHKAI GWGCWC 1 cut(s) 639
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 3 cut(s) 206, 884, 1032
BslFI GGGAC 1 cut(s) 923
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 1 cut(s) 923
BsnI GGCC 9 cut(s) 145, 274, 347, 502, 749, 832, 882, 1178, 1191
Bso31I GGTCTC 1 cut(s) 714
BsoBI CYCGRG 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 1 cut(s) 639
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 5 cut(s) 70, 331, 628, 1129, 1420
BspACI CCGC 6 cut(s) 5, 24, 31, 363, 513, 1298
BspANI GGCC 9 cut(s) 145, 274, 347, 502, 749, 832, 882, 1178, 1191
BspCNI CTCAG 2 cut(s) 408, 817
BspDI ATCGAT 1 cut(s) 1423
BspLI GGNNCC 3 cut(s) 511, 831, 1078
BspOI GCTAGC 1 cut(s) 770
BspPI GGATC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 573
BspT107I GGYRCC 2 cut(s) 509, 1076
BspTNI GGTCTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 486
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 3 cut(s) 341, 662, 1323
BssECI CCNNGG 3 cut(s) 300, 877, 1384
BssMI GATC 5 cut(s) 70, 331, 628, 1129, 1420
BssSI CACGAG 1 cut(s) 957
BssT1I CCWWGG 1 cut(s) 877
Bst2BI CACGAG 1 cut(s) 957
Bst2UI CCWGG 6 cut(s) 292, 301, 367, 1175, 1357, 1386
Bst4CI ACNGT 6 cut(s) 12, 83, 215, 329, 777, 802
BstAPI GCANNNNNTGC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 777
BstBAI YACGTR 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 6 cut(s) 147, 395, 751, 825, 1040, 1081
BstENI CCTNNNNNAGG 1 cut(s) 1273
BstF5I GGATG 6 cut(s) 190, 425, 459, 1063, 1152, 1285
BstH2I RGCGCY 2 cut(s) 373, 402
BstHHI GCGC 2 cut(s) 372, 401
BstKTI GATC 5 cut(s) 73, 334, 631, 1132, 1423
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 5 cut(s) 70, 331, 628, 1129, 1420
BstMWI GCNNNNNNNGC 3 cut(s) 488, 838, 899
BstNI CCWGG 6 cut(s) 292, 301, 367, 1175, 1357, 1386
BstSCI CCNGG 8 cut(s) 290, 299, 365, 882, 1030, 1173, 1355, 1384
BstSFI CTRYAG 1 cut(s) 664
BstV1I GCAGC 3 cut(s) 388, 469, 1282
BstV2I GAAGAC 1 cut(s) 667
BstX2I RGATCY 1 cut(s) 1129
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 1 cut(s) 1129
Bsu15I ATCGAT 1 cut(s) 1423
Bsu36I CCTNAGG 2 cut(s) 751, 1040
BsuI GTATCC 1 cut(s) 1038
BsuRI GGCC 9 cut(s) 145, 274, 347, 502, 749, 832, 882, 1178, 1191
BsuTUI ATCGAT 1 cut(s) 1423
BtsCI GGATG 6 cut(s) 190, 425, 459, 1063, 1152, 1285
BtsI GCAGTG 2 cut(s) 26, 525
BtsIMutI CAGTG 7 cut(s) 26, 88, 211, 334, 525, 773, 798
Cac8I GCNNGC 1 cut(s) 768
CfoI GCGC 2 cut(s) 372, 401
Cfr13I GGNCC 7 cut(s) 134, 208, 294, 830, 881, 1061, 1190
ClaI ATCGAT 1 cut(s) 1423
CseI GACGC 1 cut(s) 1015
CsiI ACCWGGT 1 cut(s) 1355
Csp6I GTAC 3 cut(s) 79, 778, 1283
CviAII CATG 5 cut(s) 237, 506, 999, 1054, 1272
CviQI GTAC 3 cut(s) 79, 778, 1283
DdeI CTNAG 6 cut(s) 147, 395, 751, 825, 1040, 1081
DpnI GATC 5 cut(s) 72, 333, 630, 1131, 1422
DpnII GATC 5 cut(s) 70, 331, 628, 1129, 1420
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 272
EciI GGCGGA 2 cut(s) 20, 352
Eco130I CCWWGG 1 cut(s) 877
Eco147I AGGCCT 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 714
Eco47I GGWCC 4 cut(s) 134, 208, 294, 1061
Eco47III AGCGCT 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 672
Eco81I CCTNAGG 2 cut(s) 751, 1040
Eco88I CYCGRG 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 1273
EcoRI GAATTC 1 cut(s) 1230
EcoRII CCWGG 6 cut(s) 290, 299, 365, 1173, 1355, 1384
EcoT14I CCWWGG 1 cut(s) 877
ErhI CCWWGG 1 cut(s) 877
FaeI CATG 5 cut(s) 240, 509, 1002, 1057, 1275
FaqI GGGAC 1 cut(s) 923
FatI CATG 5 cut(s) 236, 505, 998, 1053, 1271
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 402, 483, 1296
FokI GGATG 6 cut(s) 197, 412, 466, 1070, 1159, 1292
Fsp4HI GCNGC 3 cut(s) 402, 483, 1296
FspBI CTAG 2 cut(s) 767, 878
GlaI GCGC 2 cut(s) 371, 400
GluI GCNGC 3 cut(s) 402, 483, 1296
GsaI CCCAGC 1 cut(s) 495
HaeII RGCGCY 2 cut(s) 373, 402
HaeIII GGCC 9 cut(s) 145, 274, 347, 502, 749, 832, 882, 1178, 1191
HapII CCGG 3 cut(s) 206, 884, 1032
HgaI GACGC 1 cut(s) 1015
HhaI GCGC 2 cut(s) 372, 401
Hin1II CATG 5 cut(s) 240, 509, 1002, 1057, 1275
Hin6I GCGC 2 cut(s) 370, 399
HinP1I GCGC 2 cut(s) 370, 399
HincII GTYRAC 2 cut(s) 805, 927
HindII GTYRAC 2 cut(s) 805, 927
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 4 cut(s) 92, 123, 466, 1170
HpaII CCGG 3 cut(s) 206, 884, 1032
HphI GGTGA 5 cut(s) 109, 236, 341, 767, 1345
Hpy166II GTNNAC 4 cut(s) 211, 788, 805, 927
Hpy188I TCNGA 4 cut(s) 253, 1072, 1307, 1375
Hpy188III TCNNGA 6 cut(s) 68, 170, 195, 451, 632, 959
Hpy8I GTNNAC 4 cut(s) 211, 788, 805, 927
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 3 cut(s) 201, 337, 1017
HpyCH4III ACNGT 6 cut(s) 12, 83, 215, 329, 777, 802
HpyCH4IV ACGT 3 cut(s) 77, 477, 974
HpyCH4V TGCA 7 cut(s) 86, 525, 615, 730, 893, 971, 1123
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 838, 899
HpyF3I CTNAG 6 cut(s) 147, 395, 751, 825, 1040, 1081
HpySE526I ACGT 3 cut(s) 77, 477, 974
Hsp92II CATG 5 cut(s) 240, 509, 1002, 1057, 1275
HspAI GCGC 2 cut(s) 370, 399
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 5 cut(s) 70, 331, 628, 1129, 1420
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 3 cut(s) 388, 469, 1282
LweI GCATC 3 cut(s) 303, 739, 1282
MabI ACCWGGT 1 cut(s) 1355
MaeI CTAG 2 cut(s) 767, 878
MaeII ACGT 3 cut(s) 77, 477, 974
MaeIII GTNAC 3 cut(s) 113, 605, 855
MalI GATC 5 cut(s) 72, 333, 630, 1131, 1422
MboI GATC 5 cut(s) 70, 331, 628, 1129, 1420
MboII GAAGA 5 cut(s) 239, 352, 367, 667, 678
MflI RGATCY 1 cut(s) 1129
MhlI GDGCHC 1 cut(s) 639
MlsI TGGCCA 1 cut(s) 274
MluCI AATT 4 cut(s) 231, 1230, 1258, 1318
MluNI TGGCCA 1 cut(s) 274
MlyI GAGTC 3 cut(s) 132, 475, 1179
MmeI TCCRAC 5 cut(s) 231, 453, 566, 983, 1088
Mox20I TGGCCA 1 cut(s) 274
MroXI GAANNNNTTC 3 cut(s) 1049, 1199, 1346
MscI TGGCCA 1 cut(s) 274
MseI TTAA 2 cut(s) 1257, 1316
MslI CAYNNNNRTG 1 cut(s) 603
Msp20I TGGCCA 1 cut(s) 274
MspI CCGG 3 cut(s) 206, 884, 1032
MspR9I CCNGG 8 cut(s) 292, 301, 367, 884, 1032, 1175, 1357, 1386
MvaI CCWGG 6 cut(s) 292, 301, 367, 1175, 1357, 1386
MwoI GCNNNNNNNGC 3 cut(s) 488, 838, 899
NciI CCSGG 2 cut(s) 884, 1032
NdeII GATC 5 cut(s) 70, 331, 628, 1129, 1420
NheI GCTAGC 1 cut(s) 766
NlaIII CATG 5 cut(s) 240, 509, 1002, 1057, 1275
NlaIV GGNNCC 3 cut(s) 511, 831, 1078
NmeAIII GCCGAG 1 cut(s) 1204
NmuCI GTSAC 2 cut(s) 113, 605
NspV TTCGAA 1 cut(s) 573
PceI AGGCCT 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdmI GAANNNNTTC 3 cut(s) 1049, 1199, 1346
PfeI GAWTC 1 cut(s) 92
PflFI GACNNNGTC 1 cut(s) 935
PkrI GCNGC 3 cut(s) 403, 484, 1297
PleI GAGTC 3 cut(s) 131, 474, 1178
PpsI GAGTC 3 cut(s) 131, 474, 1178
Ppu21I YACGTR 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 974
Psp6I CCWGG 6 cut(s) 290, 299, 365, 1173, 1355, 1384
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 6 cut(s) 290, 299, 365, 1173, 1355, 1384
PspN4I GGNNCC 3 cut(s) 511, 831, 1078
PspPI GGNCC 7 cut(s) 134, 208, 294, 830, 881, 1061, 1190
PsuI RGATCY 1 cut(s) 1129
PsyI GACNNNGTC 1 cut(s) 935
RsaI GTAC 3 cut(s) 80, 779, 1284
RsaNI GTAC 3 cut(s) 79, 778, 1283
RseI CAYNNNNRTG 1 cut(s) 603
SaqAI TTAA 2 cut(s) 1257, 1316
SatI GCNGC 3 cut(s) 402, 483, 1296
Sau3AI GATC 5 cut(s) 70, 331, 628, 1129, 1420
Sau96I GGNCC 7 cut(s) 134, 208, 294, 830, 881, 1061, 1190
SchI GAGTC 3 cut(s) 132, 475, 1179
ScrFI CCNGG 8 cut(s) 292, 301, 367, 884, 1032, 1175, 1357, 1386
SduI GDGCHC 1 cut(s) 639
SexAI ACCWGGT 1 cut(s) 1355
SfaNI GCATC 3 cut(s) 303, 739, 1282
SfcI CTRYAG 1 cut(s) 664
SfuI TTCGAA 1 cut(s) 573
SinI GGWCC 4 cut(s) 134, 208, 294, 1061
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 4 cut(s) 231, 1230, 1258, 1318
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 6 cut(s) 5, 24, 31, 363, 513, 1298
SspMI CTAG 2 cut(s) 767, 878
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 8 cut(s) 290, 299, 365, 882, 1030, 1173, 1355, 1384
StyI CCWWGG 1 cut(s) 877
TaaI ACNGT 6 cut(s) 12, 83, 215, 329, 777, 802
TaiI ACGT 3 cut(s) 80, 480, 977
TaqI TCGA 6 cut(s) 126, 220, 573, 627, 733, 1423
TasI AATT 4 cut(s) 231, 1230, 1258, 1318
TatI WGTACW 2 cut(s) 777, 1282
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 1257, 1316
Tru9I TTAA 2 cut(s) 1257, 1316
TscAI CASTG 7 cut(s) 33, 88, 218, 341, 532, 780, 805
TseFI GTSAC 2 cut(s) 113, 605
TseI GCWGC 3 cut(s) 401, 482, 1295
Tsp45I GTSAC 2 cut(s) 113, 605
TspDTI ATGAA 4 cut(s) 225, 300, 1042, 1163
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 7 cut(s) 33, 88, 218, 341, 532, 780, 805
Tth111I GACNNNGTC 1 cut(s) 935
VpaK11BI GGWCC 4 cut(s) 134, 208, 294, 1061
XagI CCTNNNNNAGG 1 cut(s) 1273
XapI RAATTY 3 cut(s) 231, 1230, 1318
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
XmaJI CCTAGG 1 cut(s) 877
XmnI GAANNNNTTC 3 cut(s) 1049, 1199, 1346
XspI CTAG 2 cut(s) 767, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.