RchiOBHm_Chr2g0116581

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000063
Physical Location & Seq
Reverse (-)
28910679 .. 28915396
4718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48961

Sequence Viewer

Length: 2880 bp
ATGCTGCATATTGTCAAGTTCCCAGACTTGGTTGTCCAAGCAATGGCTTCGAAAGGGACCGGAGAAGACAATTATGAAGGCAAGCAAAAAAGTATTACCAAACGCTCATTTGCATTGGCGGAAGCACTAAGTCAAGCCACTGAAAAGAATGCCTCGGACTTCATGAATAGAATAACACAACGAGTCCCGAATGAAGGTGGGGTACGTCAACTTGGCCCAAGTTTCCAGAGTGATATACCGGCTGATGTGGAAAAAATTTTGAGCCAGCATGAAGTGGATGATTCTAGCTATTTCAGTGAAGGAAAAGCATGGGGAGCATGGGGAACAAAACCAGGAAAATGGCCTGGTGAAACGGCCAACTGGATTCCGTGGGTAGAACGAGTCGAGAAGCGATTTGGGGAAATATGGAAACGACTTGGGATCTATGACGCCATCAAGCTGTCCACCATTACTATTCCTTGTGACCGCTCCTTGCTGGCTGCCGCTATGTGTTTTTGGAGTTCTCAAACAAACTCTCTGGAGCTTCAGTTTGGTGCACTTAGTCCGACCTTGATTGATATAGCGGCCATTATAGGCCTGCCGCCACATGGGCAAGTGGTGGACATTGTATTTGCAGAAGGAAAGTTTGACATTGATCTTGGTGGTGAGCTAAGAGATCGAAGTAAGGGCAGACCAGCCGTTGCCAATTATAATACATGGATTGAGGTGTTTAACAGCGGCTTGGGAAATAAGTCACTTGATAGTATTGGCAGTCCAGAAGAGAAAGAGGAAAACCAGCAGGAGACAATGGAAGTAACTCATGTAGAGCATGCTGCGTTTCTTGCCTTTTGGATATGTAAGTACTTAGTGTGCACAACTTCTAAAAAAGTGAATGTGGAGTACTACAAGTTGGCTGAAGCATTAGCAAGTAAAGAAGTACAAGAGAGCGATCAGCCATTAGCTCTTGGTCCATTTGTGCTTGCCCACTTATACAGATGTCTTCACCATTGTGTGACCGAAGGACTGAACCCAAATTGGTCTGGGCCATTGTGGATTTTTCAGTTGTGGCTGCACACTTACTTTCCCACTTTCAGACAGCCGGGTTTAGCATTGGCCGTTGACACTACTCTTGGACAACAATTGGCTCCTCTTGATTTACTTCCTCATTCGGCAGAAGAGTGTTTTGAGGTGTTGTTCAAGTGTCCAGAGTTTTCTGCAGAACAGTTTGCCGTTTGTTTCAGTAGGAAGTATCCACCTTACCTTGCAATGGATATCAGCCAGCACGCCTCAGAAAGTGAGACGAGATGGGAGACTGCATGTTCAGCTTGGAAGAGTGCAATAGGTATGAGGGATCTCTTCTGGGGTGCCTTGTCTGGTAAAACACTCAAGTGTGGAGTGGAGTTATATTCACCATCCTATGTCAGTCGTCAGTTGGGATATTATCAAGCTATACCGGCTCCGGTGCCAGAATCGTCAAACCGATATAGTTCATTGCGAGCCGTTTTCTCCAATAAGGACGACATTGAGCAGAATAACAAGGCGTTTGTGTACAACATGAGCTTTCCCATGAAGACAAGAGTAGCAACTAGCAAGAGTTCCTCTCAGTTCAGAGAGTGGTGGGCGAAACGAGTAGGTAGCCGCTTTAAAGATGGGTTGGTGTCGGCTAGGCGATCGGCTTTTGCAGGAAATCCATGGGCACAAGAGAAGCCGAAAGCTGTAAGGCGTGGTAAAATAACAAGCAAAGTTGCTAGAGCATTTCCAACTATAAGTGGCCAAGAGCCTTTGAAGAAGTGTGCTAAAGGGAGCACAAAGAGAAAGGTCATCCATAGTGCGGCCACTGAGGCGGCCAAAGATGGTGCTACCATGTCTTCAGCGTCTCAATCTCCTCCAGTGAAACAATCGGCAAAACAAGACGAGCAATCTTCTGAGAGTGAAGAACAATTGTGCGTGGCCAAACGAAGTTGCCTAGAGACATTCAAGAAGGCCAACGTCCAAAATGCCATTCCTAGTGAAACAGAGGAATCCGTGGAACTAACCATTGATAAAAATGGCCACCCGAGTAGTGACGAACCCGTGGGGGAGATAATTTCTCTTGAAAGAATGGCTGAAAGCGAAGTTGTGACAATGAATATGGAAGAGACACTTGTGCTCACCCAAACTTCAACGCAAGCCAGTATTCTCTCCTCGTCGCTTAGTGAGCAACACCTGGTGTTGGCTAATGAACTAGAAGGTAATCAAGGGTTTGAAGCCGAACTTCAGGCTTTCATGAGGGCATTTTCGGCCGATGCTCTAATCCAACCAGAATGCTGCTCGGCCATTTCGCAGTTACCAACCGTGAAATTGACATCAAGGGAGGAAGTTGATGGGGCTCTGAAGGTGGTAAAGGAAACTTTAGCGCAGCCATTAAAAGAATTTGTGGAAACAGGCCAACTATCAAAAGTGAAAGTGGCCATGGATTTGTTACTTGGAGCCAAATACTTTGCCCCTCCCAAGGTAGCTCTCATTGGTGAGAAGCTAGAAGTGTTGACCCAACAAATATCCCGTGTAGCTGGTTCATACCAAGAAATAGAAAAAAGGAGACAACAAATCTTGGCTTGTGAGCAAATGAAGAAAGCCTTGGTTCCCGAGTTTGGGTGGTGTATGGAACAAAAACGGGTTGTGGAGTCTCTTGAAGGCAAGATAAATGAGTTGGAAAGACAATTGGTGTCCTTGAAACAAGAGAGACAAGAAGTGGGGGAAAAGCTCCTTCAAAGGAGTAAGCAGTGTTTCCAAAGCCAAGGACAACTGAAAAAAATAGAGGCCGAATTGAAAAATTCCGAGCCTAGGTGTATGCAACTTGAGAGTGACCTTCAGGATACTAGTTGTACCTTGGGAGCTCTTAAAGCTTTATTAGCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

959

Amino Acids

106.67

Weight (kDa)

5.97

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 140 - 533 1.8e-36 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
AasI GACNNNNNNGTC 1 cut(s) 32
AccB1I GGYRCC 2 cut(s) 1343, 1441
AccB7I CCANNNNNTGG 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 468
AciI CCGC 9 cut(s) 119, 466, 483, 563, 581, 717, 1618, 1811, 1823
AclWI GGATC 2 cut(s) 428, 1338
AcsI RAATTY 3 cut(s) 255, 2390, 2791
AcuI CTGAAG 6 cut(s) 509, 915, 1833, 2219, 2372, 2813
AcyI GRCGYC 1 cut(s) 429
AdeI CACNNNGTG 1 cut(s) 2188
AfaI GTAC 6 cut(s) 204, 842, 881, 918, 1529, 2845
AhlI ACTAGT 1 cut(s) 2837
AjnI CCWGG 3 cut(s) 331, 343, 2184
AjuI GAANNNNNNNTTGG 4 cut(s) 1965, 1997, 2579, 2611
AleI CACNNNNGTG 2 cut(s) 987, 1366
Alw21I GWGCWC 5 cut(s) 538, 854, 1787, 2130, 2857
Alw26I GTCTC 9 cut(s) 776, 1271, 1283, 1860, 1943, 2111, 2551, 2649, 2695
Alw44I GTGCAC 2 cut(s) 534, 850
AlwI GGATC 2 cut(s) 428, 1338
Ama87I CYCGRG 2 cut(s) 2035, 2603
ApaLI GTGCAC 2 cut(s) 534, 850
ApeKI GCWGC 6 cut(s) 4, 479, 812, 1048, 2286, 2377
ApoI RAATTY 3 cut(s) 255, 2390, 2791
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AspA2I CCTAGG 1 cut(s) 2801
AspLEI GCGC 1 cut(s) 2377
AspS9I GGNCC 4 cut(s) 57, 215, 947, 1022
AsuC2I CCSGG 1 cut(s) 1080
AsuHPI GGTGA 6 cut(s) 359, 656, 974, 1380, 2122, 2498
AsuII TTCGAA 1 cut(s) 50
AvaI CYCGRG 2 cut(s) 2035, 2603
AvaII GGWCC 2 cut(s) 57, 947
AvrII CCTAGG 1 cut(s) 2801
BaeGI GKGCMC 3 cut(s) 538, 854, 1678
BalI TGGCCA 4 cut(s) 1752, 1931, 2031, 2429
BanI GGYRCC 2 cut(s) 1343, 1441
BanII GRGCYC 2 cut(s) 2350, 2857
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
BbsI GAAGAC 4 cut(s) 72, 971, 1556, 1839
Bbv12I GWGCWC 5 cut(s) 538, 854, 1787, 2130, 2857
BbvI GCAGC 5 cut(s) 466, 799, 1035, 2273, 2389
BccI CCATC 6 cut(s) 440, 1278, 1399, 1622, 1826, 2336
BceAI ACGGC 5 cut(s) 369, 662, 1079, 1193, 1463
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciT130I CCWGG 3 cut(s) 333, 345, 2186
BciVI GTATCC 2 cut(s) 1239, 2827
BcnI CCSGG 1 cut(s) 1080
BcoDI GTCTC 9 cut(s) 776, 1271, 1283, 1860, 1943, 2111, 2551, 2649, 2695
BcuI ACTAGT 1 cut(s) 2837
BfmI CTRYAG 1 cut(s) 1194
BfuI GTATCC 2 cut(s) 1239, 2827
BglI GCCNNNNNGGC 2 cut(s) 589, 1820
BlnI CCTAGG 1 cut(s) 2801
BmcAI AGTACT 2 cut(s) 842, 881
Bme1390I CCNGG 4 cut(s) 333, 345, 1080, 2186
Bme18I GGWCC 2 cut(s) 57, 947
BmeT110I CYCGRG 2 cut(s) 2035, 2603
BmgT120I GGNCC 4 cut(s) 57, 215, 947, 1022
BmiI GGNNCC 7 cut(s) 58, 1125, 1345, 1437, 1443, 2449, 2601
BmrFI CCNGG 4 cut(s) 333, 345, 1080, 2186
BmsI GCATC 1 cut(s) 2254
BpiI GAAGAC 4 cut(s) 72, 971, 1556, 1839
BplI GAGNNNNNCTC 2 cut(s) 1564, 1596
BpmI CTGGAG 2 cut(s) 539, 1851
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 1349, 2837
BpuMI CCSGG 1 cut(s) 1080
BsaHI GRCGYC 1 cut(s) 429
BsaWI WCCGGW 2 cut(s) 59, 1438
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bse118I RCCGGY 2 cut(s) 238, 1432
Bse1I ACTGG 3 cut(s) 365, 1868, 2151
Bse3DI GCAATG 3 cut(s) 48, 1251, 1469
BseBI CCWGG 3 cut(s) 333, 345, 2186
BseGI GGATG 3 cut(s) 283, 1391, 1800
BseMI GCAATG 3 cut(s) 48, 1251, 1469
BseMII CTCAG 4 cut(s) 1281, 1595, 1809, 1896
BseNI ACTGG 3 cut(s) 365, 1868, 2151
BseRI GAGGAG 3 cut(s) 1116, 1854, 2152
BseSI GKGCMC 3 cut(s) 538, 854, 1678
BseX3I CGGCCG 1 cut(s) 2259
BseXI GCAGC 5 cut(s) 466, 799, 1035, 2273, 2389
BsgI GTGCAG 1 cut(s) 1034
Bsh1285I CGRYCG 2 cut(s) 1652, 2262
BshNI GGYRCC 2 cut(s) 1343, 1441
BsiEI CGRYCG 2 cut(s) 1652, 2262
BsiHKAI GWGCWC 5 cut(s) 538, 854, 1787, 2130, 2857
BsiHKCI CYCGRG 2 cut(s) 2035, 2603
BsiSI CCGG 5 cut(s) 60, 239, 1079, 1433, 1439
BslFI GGGAC 2 cut(s) 70, 170
BsmAI GTCTC 9 cut(s) 776, 1271, 1283, 1860, 1943, 2111, 2551, 2649, 2695
BsmBI CGTCTC 2 cut(s) 1271, 1860
BsmFI GGGAC 2 cut(s) 70, 170
BsmI GAATGC 2 cut(s) 154, 2288
BsoBI CYCGRG 2 cut(s) 2035, 2603
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 7 cut(s) 538, 854, 1678, 1787, 2130, 2350, 2857
Bsp1407I TGTACA 1 cut(s) 1527
Bsp143I GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
Bsp19I CCATGG 2 cut(s) 1670, 2430
BspACI CCGC 9 cut(s) 119, 466, 483, 563, 581, 717, 1618, 1811, 1823
BspCNI CTCAG 4 cut(s) 1280, 1594, 1810, 1897
BspHI TCATGA 2 cut(s) 162, 2244
BspLI GGNNCC 7 cut(s) 58, 1125, 1345, 1437, 1443, 2449, 2601
BspMAI CTGCAG 1 cut(s) 1198
BspPI GGATC 2 cut(s) 428, 1338
BspT104I TTCGAA 1 cut(s) 50
BspT107I GGYRCC 2 cut(s) 1343, 1441
BsrBI CCGCTC 1 cut(s) 468
BsrDI GCAATG 3 cut(s) 48, 1251, 1469
BsrFI RCCGGY 2 cut(s) 238, 1432
BsrGI TGTACA 1 cut(s) 1527
BsrI ACTGG 3 cut(s) 365, 1868, 2151
BssAI RCCGGY 2 cut(s) 238, 1432
BssMI GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 7 cut(s) 1670, 2430, 2469, 2595, 2755, 2801, 2847
Bst2UI CCWGG 3 cut(s) 333, 345, 2186
Bst4CI ACNGT 2 cut(s) 1203, 2314
Bst6I CTCTTC 5 cut(s) 753, 1149, 1304, 1340, 2109
BstACI GRCGYC 1 cut(s) 429
BstAUI TGTACA 1 cut(s) 1527
BstBI TTCGAA 1 cut(s) 50
BstDEI CTNAG 9 cut(s) 128, 539, 650, 844, 1267, 1581, 1818, 1905, 2171
BstDSI CCRYGG 5 cut(s) 368, 1670, 2004, 2052, 2430
BstF5I GGATG 3 cut(s) 283, 1391, 1800
BstHHI GCGC 1 cut(s) 2377
BstKTI GATC 6 cut(s) 423, 637, 658, 931, 1333, 1652
BstMAI GTCTC 9 cut(s) 776, 1271, 1283, 1860, 1943, 2111, 2551, 2649, 2695
BstMBI GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
BstMCI CGRYCG 2 cut(s) 1652, 2262
BstNI CCWGG 3 cut(s) 333, 345, 2186
BstNSI RCATGY 2 cut(s) 812, 1299
BstSCI CCNGG 4 cut(s) 331, 343, 1078, 2184
BstSFI CTRYAG 1 cut(s) 1194
BstSLI GKGCMC 3 cut(s) 538, 854, 1678
BstV1I GCAGC 5 cut(s) 466, 799, 1035, 2273, 2389
BstV2I GAAGAC 4 cut(s) 72, 971, 1556, 1839
BstX2I RGATCY 2 cut(s) 420, 1330
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 2 cut(s) 420, 1330
BstZI CGGCCG 1 cut(s) 2259
BsuI GTATCC 2 cut(s) 1239, 2827
BtgI CCRYGG 5 cut(s) 368, 1670, 2004, 2052, 2430
BtsCI GGATG 3 cut(s) 283, 1391, 1800
BtsI GCAGTG 1 cut(s) 2747
BtsIMutI CAGTG 5 cut(s) 138, 301, 1815, 1875, 2747
CciI TCATGA 2 cut(s) 162, 2244
CfoI GCGC 1 cut(s) 2377
Cfr10I RCCGGY 2 cut(s) 238, 1432
Cfr13I GGNCC 4 cut(s) 57, 215, 947, 1022
CseI GACGC 2 cut(s) 437, 1842
CsiI ACCWGGT 1 cut(s) 2184
Csp6I GTAC 6 cut(s) 203, 841, 880, 917, 1528, 2844
CviQI GTAC 6 cut(s) 203, 841, 880, 917, 1528, 2844
DdeI CTNAG 9 cut(s) 128, 539, 650, 844, 1267, 1581, 1818, 1905, 2171
DpnI GATC 6 cut(s) 422, 636, 657, 930, 1332, 1651
DpnII GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
DraI TTTAAA 1 cut(s) 1624
DraIII CACNNNGTG 1 cut(s) 2188
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EagI CGGCCG 1 cut(s) 2259
Eam1104I CTCTTC 5 cut(s) 753, 1149, 1304, 1340, 2109
EarI CTCTTC 5 cut(s) 753, 1149, 1304, 1340, 2109
EciI GGCGGA 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 2855
EclXI CGGCCG 1 cut(s) 2259
Eco130I CCWWGG 7 cut(s) 1670, 2430, 2469, 2595, 2755, 2801, 2847
Eco147I AGGCCT 1 cut(s) 576
Eco24I GRGCYC 2 cut(s) 2350, 2857
Eco32I GATATC 1 cut(s) 1252
Eco47I GGWCC 2 cut(s) 57, 947
Eco52I CGGCCG 1 cut(s) 2259
Eco53kI GAGCTC 1 cut(s) 2855
Eco57I CTGAAG 6 cut(s) 509, 915, 1833, 2219, 2372, 2813
Eco88I CYCGRG 2 cut(s) 2035, 2603
EcoICRI GAGCTC 1 cut(s) 2855
EcoRII CCWGG 3 cut(s) 331, 343, 2184
EcoRV GATATC 1 cut(s) 1252
EcoT14I CCWWGG 7 cut(s) 1670, 2430, 2469, 2595, 2755, 2801, 2847
EcoT38I GRGCYC 2 cut(s) 2350, 2857
ErhI CCWWGG 7 cut(s) 1670, 2430, 2469, 2595, 2755, 2801, 2847
Esp3I CGTCTC 2 cut(s) 1271, 1860
FalI AAGNNNNNCTT 6 cut(s) 2106, 2138, 2217, 2249, 2579, 2611
FaqI GGGAC 2 cut(s) 70, 170
FokI GGATG 3 cut(s) 290, 1378, 1787
FriOI GRGCYC 2 cut(s) 2350, 2857
GlaI GCGC 1 cut(s) 2376
GsuI CTGGAG 2 cut(s) 539, 1851
HapII CCGG 5 cut(s) 60, 239, 1079, 1433, 1439
HgaI GACGC 2 cut(s) 437, 1842
HhaI GCGC 1 cut(s) 2377
Hin1I GRCGYC 1 cut(s) 429
Hin6I GCGC 1 cut(s) 2375
HinP1I GCGC 1 cut(s) 2375
HincII GTYRAC 3 cut(s) 209, 1099, 2505
HindII GTYRAC 3 cut(s) 209, 1099, 2505
HindIII AAGCTT 1 cut(s) 2862
HinfI GANTC 7 cut(s) 183, 281, 364, 381, 1448, 2000, 2642
HpaII CCGG 5 cut(s) 60, 239, 1079, 1433, 1439
HphI GGTGA 6 cut(s) 359, 656, 974, 1380, 2122, 2498
Hpy166II GTNNAC 8 cut(s) 209, 444, 536, 601, 852, 1099, 1528, 2505
Hpy188I TCNGA 8 cut(s) 157, 546, 1073, 1270, 1589, 1906, 2352, 2797
Hpy8I GTNNAC 8 cut(s) 209, 444, 536, 601, 852, 1099, 1528, 2505
Hpy99I CGWCG 1 cut(s) 2170
HpyCH4III ACNGT 2 cut(s) 1203, 2314
HpyCH4IV ACGT 2 cut(s) 205, 1968
HpyF3I CTNAG 9 cut(s) 128, 539, 650, 844, 1267, 1581, 1818, 1905, 2171
HpySE526I ACGT 2 cut(s) 205, 1968
Hsp92I GRCGYC 1 cut(s) 429
HspAI GCGC 1 cut(s) 2375
Kzo9I GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
LmnI GCTCC 9 cut(s) 314, 473, 520, 1129, 1441, 1782, 2447, 2727, 2852
Lsp1109I GCAGC 5 cut(s) 466, 799, 1035, 2273, 2389
LweI GCATC 1 cut(s) 2254
MabI ACCWGGT 1 cut(s) 2184
MaeII ACGT 2 cut(s) 205, 1968
MaeIII GTNAC 9 cut(s) 461, 732, 793, 991, 2042, 2098, 2304, 2439, 2822
MalI GATC 6 cut(s) 422, 636, 657, 930, 1332, 1651
MbiI CCGCTC 1 cut(s) 468
MboI GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
MfeI CAATTG 3 cut(s) 1118, 1919, 2678
MflI RGATCY 2 cut(s) 420, 1330
MhlI GDGCHC 7 cut(s) 538, 854, 1678, 1787, 2130, 2350, 2857
MlsI TGGCCA 4 cut(s) 1752, 1931, 2031, 2429
MluNI TGGCCA 4 cut(s) 1752, 1931, 2031, 2429
MlyI GAGTC 3 cut(s) 192, 390, 2651
MmeI TCCRAC 4 cut(s) 569, 1763, 2299, 2649
Mox20I TGGCCA 4 cut(s) 1752, 1931, 2031, 2429
MscI TGGCCA 4 cut(s) 1752, 1931, 2031, 2429
MseI TTAA 4 cut(s) 711, 1623, 2384, 2859
MslI CAYNNNNRTG 2 cut(s) 987, 1366
Msp20I TGGCCA 4 cut(s) 1752, 1931, 2031, 2429
MspA1I CMGCKG 1 cut(s) 717
MspI CCGG 5 cut(s) 60, 239, 1079, 1433, 1439
MspR9I CCNGG 4 cut(s) 333, 345, 1080, 2186
MunI CAATTG 3 cut(s) 1118, 1919, 2678
Mva1269I GAATGC 2 cut(s) 154, 2288
MvaI CCWGG 3 cut(s) 333, 345, 2186
NciI CCSGG 1 cut(s) 1080
NcoI CCATGG 2 cut(s) 1670, 2430
NdeII GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
NlaIV GGNNCC 7 cut(s) 58, 1125, 1345, 1437, 1443, 2449, 2601
NmeAIII GCCGAG 1 cut(s) 2270
NmuCI GTSAC 6 cut(s) 461, 732, 991, 2042, 2098, 2822
NspI RCATGY 2 cut(s) 812, 1299
NspV TTCGAA 1 cut(s) 50
OliI CACNNNNGTG 2 cut(s) 987, 1366
PaeI GCATGC 1 cut(s) 812
PagI TCATGA 2 cut(s) 162, 2244
PceI AGGCCT 1 cut(s) 576
PctI GAATGC 2 cut(s) 154, 2288
PfeI GAWTC 4 cut(s) 281, 364, 1448, 2000
PflMI CCANNNNNTGG 1 cut(s) 43
Ple19I CGATCG 1 cut(s) 1652
PleI GAGTC 3 cut(s) 191, 389, 2650
PpsI GAGTC 3 cut(s) 191, 389, 2650
PsiI TTATAA 1 cut(s) 690
Psp124BI GAGCTC 1 cut(s) 2857
Psp6I CCWGG 3 cut(s) 331, 343, 2184
PspGI CCWGG 3 cut(s) 331, 343, 2184
PspN4I GGNNCC 7 cut(s) 58, 1125, 1345, 1437, 1443, 2449, 2601
PspPI GGNCC 4 cut(s) 57, 215, 947, 1022
PstI CTGCAG 1 cut(s) 1198
PsuI RGATCY 2 cut(s) 420, 1330
PvuI CGATCG 1 cut(s) 1652
RsaI GTAC 6 cut(s) 204, 842, 881, 918, 1529, 2845
RsaNI GTAC 6 cut(s) 203, 841, 880, 917, 1528, 2844
RseI CAYNNNNRTG 2 cut(s) 987, 1366
SacI GAGCTC 1 cut(s) 2857
SaqAI TTAA 4 cut(s) 711, 1623, 2384, 2859
Sau3AI GATC 6 cut(s) 420, 634, 655, 928, 1330, 1649
Sau96I GGNCC 4 cut(s) 57, 215, 947, 1022
ScaI AGTACT 2 cut(s) 842, 881
SchI GAGTC 3 cut(s) 192, 390, 2651
ScrFI CCNGG 4 cut(s) 333, 345, 1080, 2186
SduI GDGCHC 7 cut(s) 538, 854, 1678, 1787, 2130, 2350, 2857
SexAI ACCWGGT 1 cut(s) 2184
SfaNI GCATC 1 cut(s) 2254
SfcI CTRYAG 1 cut(s) 1194
SfuI TTCGAA 1 cut(s) 50
SinI GGWCC 2 cut(s) 57, 947
SmiMI CAYNNNNRTG 2 cut(s) 987, 1366
SmlI CTYRAG 2 cut(s) 1364, 2816
SmoI CTYRAG 2 cut(s) 1364, 2816
SpeI ACTAGT 1 cut(s) 2837
SphI GCATGC 1 cut(s) 812
SseBI AGGCCT 1 cut(s) 576
SsiI CCGC 9 cut(s) 119, 466, 483, 563, 581, 717, 1618, 1811, 1823
SstI GAGCTC 1 cut(s) 2857
StuI AGGCCT 1 cut(s) 576
StyD4I CCNGG 4 cut(s) 331, 343, 1078, 2184
StyI CCWWGG 7 cut(s) 1670, 2430, 2469, 2595, 2755, 2801, 2847
TaaI ACNGT 2 cut(s) 1203, 2314
TaiI ACGT 2 cut(s) 208, 1971
TaqI TCGA 3 cut(s) 50, 384, 658
TaqII GACCGA 1 cut(s) 1010
TatI WGTACW 4 cut(s) 840, 879, 916, 1527
TauI GCSGC 7 cut(s) 485, 566, 583, 720, 1620, 1814, 1826
TfiI GAWTC 4 cut(s) 281, 364, 1448, 2000
Tru1I TTAA 4 cut(s) 711, 1623, 2384, 2859
Tru9I TTAA 4 cut(s) 711, 1623, 2384, 2859
TscAI CASTG 5 cut(s) 145, 301, 1822, 1875, 2747
TseFI GTSAC 6 cut(s) 461, 732, 991, 2042, 2098, 2822
TseI GCWGC 6 cut(s) 4, 479, 812, 1048, 2286, 2377
Tsp45I GTSAC 6 cut(s) 461, 732, 991, 2042, 2098, 2822
TspGWI ACGGA 2 cut(s) 357, 1993
TspRI CASTG 5 cut(s) 145, 301, 1822, 1875, 2747
Van91I CCANNNNNTGG 1 cut(s) 43
VneI GTGCAC 2 cut(s) 534, 850
VpaK11BI GGWCC 2 cut(s) 57, 947
XapI RAATTY 3 cut(s) 255, 2390, 2791
XceI RCATGY 2 cut(s) 812, 1299
XmaJI CCTAGG 1 cut(s) 2801
ZrmI AGTACT 2 cut(s) 842, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.