Plant mobile domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PMD | PF10536 | 3 - 197 | 4.8e-23 | Plant mobile domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 204 |
| AciI | CCGC | 5 cut(s) | 95, 231, 326, 609, 641 |
| AcoI | YGGCCR | 1 cut(s) | 606 |
| AcsI | RAATTY | 1 cut(s) | 701 |
| AcuI | CTGAAG | 3 cut(s) | 23, 429, 531 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 101 |
| AgsI | TTSAA | 1 cut(s) | 554 |
| AjnI | CCWGG | 2 cut(s) | 532, 592 |
| AleI | CACNNNNGTG | 1 cut(s) | 501 |
| AluBI | AGCT | 3 cut(s) | 37, 163, 455 |
| AluI | AGCT | 3 cut(s) | 37, 163, 455 |
| Alw21I | GWGCWC | 2 cut(s) | 52, 368 |
| Alw26I | GTCTC | 1 cut(s) | 290 |
| Alw44I | GTGCAC | 2 cut(s) | 48, 364 |
| AoxI | GGCC | 4 cut(s) | 88, 530, 536, 606 |
| ApaLI | GTGCAC | 2 cut(s) | 48, 364 |
| ApeKI | GCWGC | 3 cut(s) | 77, 264, 562 |
| ApoI | RAATTY | 1 cut(s) | 701 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 107, 139 |
| AspS9I | GGNCC | 2 cut(s) | 461, 536 |
| AsuHPI | GGTGA | 4 cut(s) | 170, 240, 250, 488 |
| AsuNHI | GCTAGC | 1 cut(s) | 472 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BaeGI | GKGCMC | 2 cut(s) | 52, 368 |
| BbsI | GAAGAC | 1 cut(s) | 485 |
| Bbv12I | GWGCWC | 2 cut(s) | 52, 368 |
| BbvI | GCAGC | 3 cut(s) | 89, 276, 549 |
| BccI | CCATC | 2 cut(s) | 149, 254 |
| BceAI | ACGGC | 1 cut(s) | 176 |
| BciT130I | CCWGG | 2 cut(s) | 534, 594 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcoDI | GTCTC | 1 cut(s) | 290 |
| BfaI | CTAG | 1 cut(s) | 473 |
| BfmI | CTRYAG | 2 cut(s) | 315, 708 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 103 |
| BisI | GCNGC | 7 cut(s) | 78, 95, 232, 265, 327, 563, 609 |
| BlsI | GCNGC | 7 cut(s) | 79, 96, 233, 266, 328, 564, 610 |
| Bme1390I | CCNGG | 2 cut(s) | 534, 594 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 536 |
| BmiI | GGNNCC | 1 cut(s) | 639 |
| BmrFI | CCNGG | 2 cut(s) | 534, 594 |
| BmtI | GCTAGC | 1 cut(s) | 476 |
| BpiI | GAAGAC | 1 cut(s) | 485 |
| BpmI | CTGGAG | 1 cut(s) | 53 |
| BpuEI | CTTGAG | 1 cut(s) | 665 |
| Bsa29I | ATCGAT | 1 cut(s) | 147 |
| BsaJI | CCNNGG | 1 cut(s) | 533 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 26, 56 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 101 |
| BseBI | CCWGG | 2 cut(s) | 534, 594 |
| BseCI | ATCGAT | 1 cut(s) | 147 |
| BseDI | CCNNGG | 1 cut(s) | 533 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 101 |
| BseMII | CTCAG | 1 cut(s) | 243 |
| BseSI | GKGCMC | 2 cut(s) | 52, 368 |
| BseXI | GCAGC | 3 cut(s) | 89, 276, 549 |
| BsgI | GTGCAG | 1 cut(s) | 548 |
| BshFI | GGCC | 4 cut(s) | 90, 532, 538, 608 |
| BshVI | ATCGAT | 1 cut(s) | 147 |
| BsiHKAI | GWGCWC | 2 cut(s) | 52, 368 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 101 |
| BsmAI | GTCTC | 1 cut(s) | 290 |
| BsnI | GGCC | 4 cut(s) | 90, 532, 538, 608 |
| Bsp1286I | GDGCHC | 2 cut(s) | 52, 368 |
| Bsp143I | GATC | 3 cut(s) | 148, 169, 442 |
| BspACI | CCGC | 5 cut(s) | 95, 231, 326, 609, 641 |
| BspANI | GGCC | 4 cut(s) | 90, 532, 538, 608 |
| BspCNI | CTCAG | 1 cut(s) | 244 |
| BspDI | ATCGAT | 1 cut(s) | 147 |
| BspLI | GGNNCC | 1 cut(s) | 639 |
| BspMAI | CTGCAG | 1 cut(s) | 712 |
| BspOI | GCTAGC | 1 cut(s) | 476 |
| BssECI | CCNNGG | 1 cut(s) | 533 |
| BssMI | GATC | 3 cut(s) | 148, 169, 442 |
| Bst2UI | CCWGG | 2 cut(s) | 534, 594 |
| Bst4CI | ACNGT | 2 cut(s) | 633, 717 |
| Bst6I | CTCTTC | 1 cut(s) | 663 |
| BstC8I | GCNNGC | 4 cut(s) | 92, 324, 421, 474 |
| BstDEI | CTNAG | 4 cut(s) | 53, 164, 252, 358 |
| BstKTI | GATC | 3 cut(s) | 151, 172, 445 |
| BstMAI | GTCTC | 1 cut(s) | 290 |
| BstMBI | GATC | 3 cut(s) | 148, 169, 442 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 103, 335, 608 |
| BstNI | CCWGG | 2 cut(s) | 534, 594 |
| BstNSI | RCATGY | 1 cut(s) | 326 |
| BstSCI | CCNGG | 2 cut(s) | 532, 592 |
| BstSFI | CTRYAG | 2 cut(s) | 315, 708 |
| BstSLI | GKGCMC | 2 cut(s) | 52, 368 |
| BstV1I | GCAGC | 3 cut(s) | 89, 276, 549 |
| BstV2I | GAAGAC | 1 cut(s) | 485 |
| Bsu15I | ATCGAT | 1 cut(s) | 147 |
| BsuRI | GGCC | 4 cut(s) | 90, 532, 538, 608 |
| BsuTUI | ATCGAT | 1 cut(s) | 147 |
| Cac8I | GCNNGC | 4 cut(s) | 92, 324, 421, 474 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 536 |
| ClaI | ATCGAT | 1 cut(s) | 147 |
| CviAII | CATG | 3 cut(s) | 101, 210, 323 |
| DdeI | CTNAG | 4 cut(s) | 53, 164, 252, 358 |
| DpnI | GATC | 3 cut(s) | 150, 171, 444 |
| DpnII | GATC | 3 cut(s) | 148, 169, 442 |
| EaeI | YGGCCR | 1 cut(s) | 606 |
| Eam1104I | CTCTTC | 1 cut(s) | 663 |
| EarI | CTCTTC | 1 cut(s) | 663 |
| Eco147I | AGGCCT | 1 cut(s) | 90 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco57I | CTGAAG | 3 cut(s) | 23, 429, 531 |
| EcoRII | CCWGG | 2 cut(s) | 532, 592 |
| FaeI | CATG | 3 cut(s) | 104, 213, 326 |
| FaiI | YATR | 9 cut(s) | 74, 86, 102, 204, 211, 324, 349, 486, 599 |
| FatI | CATG | 3 cut(s) | 100, 209, 322 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 7 cut(s) | 78, 95, 232, 265, 327, 563, 609 |
| Fsp4HI | GCNGC | 7 cut(s) | 78, 95, 232, 265, 327, 563, 609 |
| FspBI | CTAG | 1 cut(s) | 473 |
| GluI | GCNGC | 7 cut(s) | 78, 95, 232, 265, 327, 563, 609 |
| GsuI | CTGGAG | 1 cut(s) | 53 |
| HaeIII | GGCC | 4 cut(s) | 90, 532, 538, 608 |
| Hin1II | CATG | 3 cut(s) | 104, 213, 326 |
| HphI | GGTGA | 4 cut(s) | 170, 240, 250, 488 |
| Hpy166II | GTNNAC | 4 cut(s) | 50, 115, 366, 520 |
| Hpy188I | TCNGA | 2 cut(s) | 60, 587 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 152, 698 |
| Hpy8I | GTNNAC | 4 cut(s) | 50, 115, 366, 520 |
| HpyAV | CCTTC | 2 cut(s) | 265, 506 |
| HpyCH4III | ACNGT | 2 cut(s) | 633, 717 |
| HpyCH4V | TGCA | 6 cut(s) | 50, 128, 366, 433, 565, 710 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 103, 335, 608 |
| HpyF3I | CTNAG | 4 cut(s) | 53, 164, 252, 358 |
| Hsp92II | CATG | 3 cut(s) | 104, 213, 326 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 3 cut(s) | 148, 169, 442 |
| LmnI | GCTCC | 2 cut(s) | 34, 643 |
| Lsp1109I | GCAGC | 3 cut(s) | 89, 276, 549 |
| MaeI | CTAG | 1 cut(s) | 473 |
| MaeIII | GTNAC | 3 cut(s) | 246, 307, 505 |
| MalI | GATC | 3 cut(s) | 150, 171, 444 |
| MboI | GATC | 3 cut(s) | 148, 169, 442 |
| MboII | GAAGA | 2 cut(s) | 485, 680 |
| MfeI | CAATTG | 1 cut(s) | 554 |
| MhlI | GDGCHC | 2 cut(s) | 52, 368 |
| MluCI | AATT | 4 cut(s) | 199, 526, 554, 701 |
| MmeI | TCCRAC | 1 cut(s) | 83 |
| MnlI | CCTC | 4 cut(s) | 211, 234, 274, 666 |
| MseI | TTAA | 2 cut(s) | 141, 225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 501 |
| MspA1I | CMGCKG | 1 cut(s) | 231 |
| MspR9I | CCNGG | 2 cut(s) | 534, 594 |
| MunI | CAATTG | 1 cut(s) | 554 |
| MvaI | CCWGG | 2 cut(s) | 534, 594 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 103, 335, 608 |
| NdeII | GATC | 3 cut(s) | 148, 169, 442 |
| NheI | GCTAGC | 1 cut(s) | 472 |
| NlaIII | CATG | 3 cut(s) | 104, 213, 326 |
| NlaIV | GGNNCC | 1 cut(s) | 639 |
| NmuCI | GTSAC | 2 cut(s) | 246, 505 |
| NspI | RCATGY | 1 cut(s) | 326 |
| OliI | CACNNNNGTG | 1 cut(s) | 501 |
| PaeI | GCATGC | 1 cut(s) | 326 |
| PceI | AGGCCT | 1 cut(s) | 90 |
| PkrI | GCNGC | 7 cut(s) | 79, 96, 233, 266, 328, 564, 610 |
| PsiI | TTATAA | 1 cut(s) | 204 |
| Psp6I | CCWGG | 2 cut(s) | 532, 592 |
| PspGI | CCWGG | 2 cut(s) | 532, 592 |
| PspN4I | GGNNCC | 1 cut(s) | 639 |
| PspPI | GGNCC | 2 cut(s) | 461, 536 |
| PstI | CTGCAG | 1 cut(s) | 712 |
| RseI | CAYNNNNRTG | 1 cut(s) | 501 |
| SaqAI | TTAA | 2 cut(s) | 141, 225 |
| SatI | GCNGC | 7 cut(s) | 78, 95, 232, 265, 327, 563, 609 |
| Sau3AI | GATC | 3 cut(s) | 148, 169, 442 |
| Sau96I | GGNCC | 2 cut(s) | 461, 536 |
| ScrFI | CCNGG | 2 cut(s) | 534, 594 |
| SduI | GDGCHC | 2 cut(s) | 52, 368 |
| SetI | ASST | 9 cut(s) | 39, 65, 165, 222, 253, 457, 598, 658, 695 |
| SfcI | CTRYAG | 2 cut(s) | 315, 708 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 501 |
| SmlI | CTYRAG | 1 cut(s) | 644 |
| SmoI | CTYRAG | 1 cut(s) | 644 |
| SphI | GCATGC | 1 cut(s) | 326 |
| Sse9I | AATT | 4 cut(s) | 199, 526, 554, 701 |
| SseBI | AGGCCT | 1 cut(s) | 90 |
| SsiI | CCGC | 5 cut(s) | 95, 231, 326, 609, 641 |
| SspMI | CTAG | 1 cut(s) | 473 |
| StuI | AGGCCT | 1 cut(s) | 90 |
| StyD4I | CCNGG | 2 cut(s) | 532, 592 |
| TaaI | ACNGT | 2 cut(s) | 633, 717 |
| TaqI | TCGA | 3 cut(s) | 147, 172, 662 |
| TasI | AATT | 4 cut(s) | 199, 526, 554, 701 |
| TauI | GCSGC | 4 cut(s) | 97, 234, 329, 611 |
| Tru1I | TTAA | 2 cut(s) | 141, 225 |
| Tru9I | TTAA | 2 cut(s) | 141, 225 |
| TseFI | GTSAC | 2 cut(s) | 246, 505 |
| TseI | GCWGC | 3 cut(s) | 77, 264, 562 |
| Tsp45I | GTSAC | 2 cut(s) | 246, 505 |
| VneI | GTGCAC | 2 cut(s) | 48, 364 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XapI | RAATTY | 1 cut(s) | 701 |
| XceI | RCATGY | 1 cut(s) | 326 |
| XspI | CTAG | 1 cut(s) | 473 |