Rmu_sc0004515.1_g000006

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004515.1
OG0000063
Physical Location & Seq
Forward (+)
43011 .. 46375
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004515.1_g000006.1.cds

Sequence Viewer

Length: 2040 bp
atggctgatgatatatcagaaaccaaaacggggctagaggacagcgaagcaacaaaagcacaattggctgtaatgaaagcacaattggccgaattctcaaacaagtttgaagctgcttttagtgcttctatggaaaaactccaaagctctgtgatatgtcggttggcgaagaacaaggaaccgcgaagagagagtgtattaggaccccattacagcttgggtatgcctccggccatcaatgagccagggagttggccgaaattgacacccgagtggaagaaatgggtgccacggatggagcactttttcggctgctcatggaaaaaatttggtatttatgatagcattaaaatgtctgagcaagaaatctacatggaccggccttttcttgctgctgccttgtgtttttggtcatctgctactaacaccatgaacctgccacttgggccaatgagtccaaccttgctagatatggccgcaatatttgattttcgaccgaatggagaggagatatgtgccttagctgaccttccttcctcttttcatgctagcctgaaacccaaagtgaacaaggacgacaagaaagccaaacaaaaagatgatgtcaaagcgaggaagttgcttaactatagcactttctacgctgaacatgcaattgccgaggatgtgtccacgtcgaacaagtgcttgttcaagtttgctggtattgcggaggcccttagcttggttaaaccttcagcccttggtctgtttgtccttgcctatctttaccgtaccttgcgtaatgtagtgaccaacaatatgacactggatgttggaaggccattatggatgttccaggtatgggtgcaaacttactttcgtcagcttcgaccaagtcatccttttgattccgctgtgattctcggctgccagattatctctcttggtcctcatgcacattcgtttggcaattttgagaaatccggcctgagcacccgcgaacctgatcatagagaaactccgactttccaagcttggtggtcaacatttatcaagaagaaacttggagaggacttgcggacaaccgagcgcaatggcaagaagaaagcaccggttgccaagtcgaaatccaaagaaatgtccaaggaagagcaaacctcaaagaaacgaggatcaaagtcgggaagaactctgcctaccaagaaggtaaagaagtcacctgacgtggtggagagttcggtcacgaatctggctgacattatggttagtgaagacataattttcgagggtgatacggataatagccaaaatgctctagttgaaaatcacatcatgtctggagctgaggatgcggtcgaaactagtgatgcctcaaacaacaacacgggctcggccgacagggaaggttcgcctgatgaagcacagacttgggtgagaaccagcttcctaatatcgactaaccactcgcaaacccagctaaccttgctaaggatgcggaagacatcggtacgagaaactcaaagcatttcaaccttggagttggctcttctcaatccaactgaaccaaatccttctatgtccgaaatgcttacctcccctcctactgaagggatgcctcaaaatgatcaagctatcgtttgggccccatcgtcggctgagcctgtggatcaaacaacaggtgatcttggtctggagttacttcaatttcttgatacgctagacaacaacgcgagcccggtggaggaaaagcttgaaacaaccgaaaccaagaaagcacttgaatcggtcagacaatttttgggttgtgatacgagaacagtaacagagggtagttttcttgctttcaaggaggcggttgaagtacttatttcagccaaccatttatctcaagtagaagcttatgaagttcatgcccttttgtcccgtgcaaattttagtctctctccctgcttagaagcccaaaaagagtttgaaaccggcgagaagttgataagtaagtataaagacattcgccagtctaccgatcttggccagtctaccgatcttggccaaccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase cNMP_binding

Protein Analysis

679

Amino Acids

75.52

Weight (kDa)

5.74

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 286
AccI GTMKAC 2 cut(s) 2000, 2018
AccII CGCG 3 cut(s) 184, 981, 1712
AciI CCGC 9 cut(s) 182, 477, 710, 894, 979, 1060, 1334, 1477, 1835
AclWI GGATC 2 cut(s) 1162, 1656
AcoI YGGCCR 7 cut(s) 87, 231, 254, 474, 1374, 2011, 2029
AcsI RAATTY 3 cut(s) 92, 326, 1912
AcuI CTGAAG 2 cut(s) 720, 1608
AfaI GTAC 3 cut(s) 775, 1491, 1845
AfiI CCNNNNNNNGG 7 cut(s) 30, 724, 844, 1470, 1589, 1633, 1723
AgeI ACCGGT 1 cut(s) 1093
AhlI ACTAGT 1 cut(s) 1343
AjiI CACGTC 2 cut(s) 675, 1207
AjnI CCWGG 2 cut(s) 244, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AleI CACNNNNGTG 1 cut(s) 271
Alw21I GWGCWC 2 cut(s) 303, 977
Alw26I GTCTC 1 cut(s) 1925
AlwI GGATC 2 cut(s) 1162, 1656
Ama87I CYCGRG 1 cut(s) 269
ApaI GGGCCC 1 cut(s) 1627
ApeKI GCWGC 5 cut(s) 113, 312, 392, 395, 909
ApoI RAATTY 3 cut(s) 92, 326, 1912
ArsI GACNNNNNNTTYG 2 cut(s) 1247, 1279
AsiGI ACCGGT 1 cut(s) 1093
AspLEI GCGC 1 cut(s) 1074
AspS9I GGNCC 7 cut(s) 203, 376, 446, 715, 929, 1623, 1624
AsuC2I CCSGG 1 cut(s) 1718
AsuHPI GGTGA 4 cut(s) 1191, 1283, 1426, 1673
AsuNHI GCTAGC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 3 cut(s) 203, 376, 929
BaeGI GKGCMC 1 cut(s) 1627
BalI TGGCCA 2 cut(s) 2013, 2031
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 3 cut(s) 1373, 1627, 1718
BbsI GAAGAC 2 cut(s) 1260, 1487
Bbv12I GWGCWC 2 cut(s) 303, 977
BbvCI CCTCAGC 1 cut(s) 1326
BbvI GCAGC 5 cut(s) 100, 299, 379, 382, 896
BccI CCATC 3 cut(s) 242, 289, 1636
BcgI CGANNNNNNTGC 4 cut(s) 601, 635, 1746, 1780
BciT130I CCWGG 2 cut(s) 246, 839
BclI TGATCA 2 cut(s) 988, 1606
BcnI CCSGG 1 cut(s) 1718
BcoDI GTCTC 1 cut(s) 1925
BcuI ACTAGT 1 cut(s) 1343
BfaI CTAG 6 cut(s) 35, 467, 549, 1298, 1344, 1700
BfmI CTRYAG 1 cut(s) 628
BfuAI ACCTGC 1 cut(s) 444
BglI GCCNNNNNGGC 1 cut(s) 445
BisI GCNGC 6 cut(s) 114, 313, 393, 396, 477, 910
BlpI GCTNAGC 1 cut(s) 1638
BlsI GCNGC 6 cut(s) 115, 314, 394, 397, 478, 911
BmcAI AGTACT 1 cut(s) 1845
Bme1390I CCNGG 3 cut(s) 246, 839, 1718
Bme18I GGWCC 3 cut(s) 203, 376, 929
BmeT110I CYCGRG 1 cut(s) 269
BmgBI CACGTC 2 cut(s) 675, 1207
BmgT120I GGNCC 7 cut(s) 203, 376, 446, 715, 929, 1623, 1624
BmiI GGNNCC 5 cut(s) 180, 205, 288, 1625, 1626
BmrFI CCNGG 3 cut(s) 246, 839, 1718
BmsI GCATC 4 cut(s) 1321, 1339, 1464, 1584
BmtI GCTAGC 1 cut(s) 552
BpiI GAAGAC 2 cut(s) 1260, 1487
BplI GAGNNNNNCTC 2 cut(s) 1124, 1156
BpmI CTGGAG 2 cut(s) 1341, 1694
Bpu10I CCTNAGC 5 cut(s) 520, 719, 971, 1326, 1469
Bpu1102I GCTNAGC 1 cut(s) 1638
BpuEI CTTGAG 1 cut(s) 1854
BpuMI CCSGG 1 cut(s) 1718
BsaJI CCNNGG 6 cut(s) 245, 290, 660, 742, 1125, 1515
BsaWI WCCGGW 1 cut(s) 1093
BsaXI ACNNNNNCTCC 2 cut(s) 1564, 1594
Bsc4I CCNNNNNNNGG 7 cut(s) 30, 724, 844, 1470, 1589, 1633, 1723
Bse118I RCCGGY 3 cut(s) 378, 1093, 1958
Bse1I ACTGG 3 cut(s) 813, 1996, 2014
Bse3DI GCAATG 1 cut(s) 1081
BseBI CCWGG 2 cut(s) 246, 839
BseDI CCNNGG 6 cut(s) 245, 290, 660, 742, 1125, 1515
BseGI GGATG 8 cut(s) 300, 670, 817, 837, 880, 1336, 1479, 1599
BseLI CCNNNNNNNGG 7 cut(s) 30, 724, 844, 1470, 1589, 1633, 1723
BseMI GCAATG 1 cut(s) 1081
BseMII CTCAG 4 cut(s) 348, 962, 1317, 1629
BseNI ACTGG 3 cut(s) 813, 1996, 2014
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 1627
BseX3I CGGCCG 1 cut(s) 1374
BseXI GCAGC 5 cut(s) 100, 299, 379, 382, 896
BseYI CCCAGC 1 cut(s) 1455
Bsh1236I CGCG 3 cut(s) 184, 981, 1712
Bsh1285I CGRYCG 3 cut(s) 497, 1338, 1377
BshNI GGYRCC 1 cut(s) 286
BshTI ACCGGT 1 cut(s) 1093
BsiEI CGRYCG 3 cut(s) 497, 1338, 1377
BsiHKAI GWGCWC 2 cut(s) 303, 977
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 6 cut(s) 230, 379, 966, 1094, 1718, 1959
BslFI GGGAC 1 cut(s) 1888
BslI CCNNNNNNNGG 7 cut(s) 30, 724, 844, 1470, 1589, 1633, 1723
BsmAI GTCTC 1 cut(s) 1925
BsmFI GGGAC 1 cut(s) 1888
BsoBI CYCGRG 1 cut(s) 269
Bsp120I GGGCCC 1 cut(s) 1623
Bsp1286I GDGCHC 5 cut(s) 303, 977, 1373, 1627, 1718
Bsp143I GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
Bsp1720I GCTNAGC 1 cut(s) 1638
BspACI CCGC 9 cut(s) 182, 477, 710, 894, 979, 1060, 1334, 1477, 1835
BspCNI CTCAG 4 cut(s) 349, 963, 1318, 1630
BspFNI CGCG 3 cut(s) 184, 981, 1712
BspLI GGNNCC 5 cut(s) 180, 205, 288, 1625, 1626
BspMI ACCTGC 1 cut(s) 444
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 2 cut(s) 1162, 1656
BspQI GCTCTTC 2 cut(s) 1125, 1533
BspT107I GGYRCC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 1081
BsrFI RCCGGY 3 cut(s) 378, 1093, 1958
BsrI ACTGG 3 cut(s) 813, 1996, 2014
BssAI RCCGGY 3 cut(s) 378, 1093, 1958
BssECI CCNNGG 6 cut(s) 245, 290, 660, 742, 1125, 1515
BssMI GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
BssT1I CCWWGG 3 cut(s) 742, 1125, 1515
Bst2UI CCWGG 2 cut(s) 246, 839
Bst4CI ACNGT 2 cut(s) 773, 1801
Bst6I CTCTTC 3 cut(s) 181, 1125, 1533
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstC8I GCNNGC 2 cut(s) 550, 1714
BstDEI CTNAG 8 cut(s) 357, 520, 719, 971, 1326, 1469, 1638, 1933
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 2 cut(s) 1468, 1587
BstF5I GGATG 8 cut(s) 300, 670, 817, 837, 880, 1336, 1479, 1599
BstFNI CGCG 3 cut(s) 184, 981, 1712
BstHHI GCGC 1 cut(s) 1074
BstKTI GATC 7 cut(s) 991, 1157, 1609, 1651, 1666, 2008, 2026
BstMAI GTCTC 1 cut(s) 1925
BstMBI GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
BstMCI CGRYCG 3 cut(s) 497, 1338, 1377
BstNI CCWGG 2 cut(s) 246, 839
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 244, 837, 1716
BstSFI CTRYAG 1 cut(s) 628
BstSLI GKGCMC 1 cut(s) 1627
BstUI CGCG 3 cut(s) 184, 981, 1712
BstV1I GCAGC 5 cut(s) 100, 299, 379, 382, 896
BstV2I GAAGAC 2 cut(s) 1260, 1487
BstXI CCANNNNNNTGG 1 cut(s) 252
BstZI CGGCCG 1 cut(s) 1374
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 2 cut(s) 675, 1207
BtsCI GGATG 8 cut(s) 300, 670, 817, 837, 880, 1336, 1479, 1599
BtsIMutI CAGTG 1 cut(s) 806
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 550, 1714
CfoI GCGC 1 cut(s) 1074
Cfr10I RCCGGY 3 cut(s) 378, 1093, 1958
Cfr13I GGNCC 7 cut(s) 203, 376, 446, 715, 929, 1623, 1624
Csp6I GTAC 3 cut(s) 774, 1490, 1844
CspAI ACCGGT 1 cut(s) 1093
CspCI CAANNNNNGTGG 2 cut(s) 1001, 1036
CviAII CATG 8 cut(s) 318, 373, 430, 545, 650, 935, 1315, 1892
CviQI GTAC 3 cut(s) 774, 1490, 1844
DdeI CTNAG 8 cut(s) 357, 520, 719, 971, 1326, 1469, 1638, 1933
DpnI GATC 7 cut(s) 990, 1156, 1608, 1650, 1665, 2007, 2025
DpnII GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
EaeI YGGCCR 7 cut(s) 87, 231, 254, 474, 1374, 2011, 2029
EagI CGGCCG 1 cut(s) 1374
Eam1104I CTCTTC 3 cut(s) 181, 1125, 1533
EarI CTCTTC 3 cut(s) 181, 1125, 1533
EclXI CGGCCG 1 cut(s) 1374
Eco130I CCWWGG 3 cut(s) 742, 1125, 1515
Eco24I GRGCYC 3 cut(s) 1373, 1627, 1718
Eco47I GGWCC 3 cut(s) 203, 376, 929
Eco52I CGGCCG 1 cut(s) 1374
Eco57I CTGAAG 2 cut(s) 720, 1608
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 2 cut(s) 1468, 1587
EcoO109I RGGNCCY 3 cut(s) 203, 715, 1624
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 244, 837
EcoT14I CCWWGG 3 cut(s) 742, 1125, 1515
EcoT38I GRGCYC 3 cut(s) 1373, 1627, 1718
ErhI CCWWGG 3 cut(s) 742, 1125, 1515
FaeI CATG 8 cut(s) 321, 376, 433, 548, 653, 938, 1318, 1895
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FaqI GGGAC 1 cut(s) 1888
FatI CATG 8 cut(s) 317, 372, 429, 544, 649, 934, 1314, 1891
FauI CCCGC 1 cut(s) 986
FbaI TGATCA 2 cut(s) 988, 1606
FblI GTMKAC 2 cut(s) 2000, 2018
Fnu4HI GCNGC 6 cut(s) 114, 313, 393, 396, 477, 910
FokI GGATG 8 cut(s) 307, 677, 824, 844, 867, 1343, 1486, 1606
FriOI GRGCYC 3 cut(s) 1373, 1627, 1718
Fsp4HI GCNGC 6 cut(s) 114, 313, 393, 396, 477, 910
FspBI CTAG 6 cut(s) 35, 467, 549, 1298, 1344, 1700
GlaI GCGC 1 cut(s) 1073
GluI GCNGC 6 cut(s) 114, 313, 393, 396, 477, 910
GsaI CCCAGC 1 cut(s) 1459
GsuI CTGGAG 2 cut(s) 1341, 1694
HapII CCGG 6 cut(s) 230, 379, 966, 1094, 1718, 1959
HhaI GCGC 1 cut(s) 1074
Hin1II CATG 8 cut(s) 321, 376, 433, 548, 653, 938, 1318, 1895
Hin6I GCGC 1 cut(s) 1072
HinP1I GCGC 1 cut(s) 1072
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HindIII AAGCTT 3 cut(s) 1014, 1730, 1878
HinfI GANTC 5 cut(s) 454, 890, 901, 1228, 1763
HpaII CCGG 6 cut(s) 230, 379, 966, 1094, 1718, 1959
HphI GGTGA 4 cut(s) 1191, 1283, 1426, 1673
Hpy166II GTNNAC 5 cut(s) 568, 672, 1026, 2001, 2019
Hpy188I TCNGA 5 cut(s) 19, 358, 1005, 1564, 1772
Hpy188III TCNNGA 6 cut(s) 1036, 1164, 1225, 1320, 1673, 1691
Hpy8I GTNNAC 5 cut(s) 568, 672, 1026, 2001, 2019
Hpy99I CGWCG 2 cut(s) 679, 1636
HpyAV CCTTC 8 cut(s) 539, 543, 744, 813, 1180, 1379, 1563, 1583
HpyCH4III ACNGT 2 cut(s) 773, 1801
HpyCH4IV ACGT 2 cut(s) 674, 1206
HpyCH4V TGCA 4 cut(s) 653, 850, 938, 1910
HpyF3I CTNAG 8 cut(s) 357, 520, 719, 971, 1326, 1469, 1638, 1933
HpySE526I ACGT 2 cut(s) 674, 1206
Hsp92II CATG 8 cut(s) 321, 376, 433, 548, 653, 938, 1318, 1895
HspAI GCGC 1 cut(s) 1072
Ksp22I TGATCA 2 cut(s) 988, 1606
Kzo9I GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
LguI GCTCTTC 2 cut(s) 1125, 1533
LmnI GCTCC 2 cut(s) 298, 1322
Lsp1109I GCAGC 5 cut(s) 100, 299, 379, 382, 896
LweI GCATC 4 cut(s) 1321, 1339, 1464, 1584
MaeI CTAG 6 cut(s) 35, 467, 549, 1298, 1344, 1700
MaeII ACGT 2 cut(s) 674, 1206
MaeIII GTNAC 5 cut(s) 790, 1197, 1222, 1677, 1801
MalI GATC 7 cut(s) 990, 1156, 1608, 1650, 1665, 2007, 2025
MboI GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
MfeI CAATTG 3 cut(s) 62, 83, 654
MhlI GDGCHC 5 cut(s) 303, 977, 1373, 1627, 1718
MlsI TGGCCA 2 cut(s) 2013, 2031
MluNI TGGCCA 2 cut(s) 2013, 2031
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 4 cut(s) 482, 796, 1028, 1562
Mox20I TGGCCA 2 cut(s) 2013, 2031
MscI TGGCCA 2 cut(s) 2013, 2031
MseI TTAA 3 cut(s) 348, 624, 729
MslI CAYNNNNRTG 2 cut(s) 271, 350
Msp20I TGGCCA 2 cut(s) 2013, 2031
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 6 cut(s) 230, 379, 966, 1094, 1718, 1959
MspR9I CCNGG 3 cut(s) 246, 839, 1718
MunI CAATTG 3 cut(s) 62, 83, 654
MvaI CCWGG 2 cut(s) 246, 839
MvnI CGCG 3 cut(s) 184, 981, 1712
NciI CCSGG 1 cut(s) 1718
NdeII GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 8 cut(s) 321, 376, 433, 548, 653, 938, 1318, 1895
NlaIV GGNNCC 5 cut(s) 180, 205, 288, 1625, 1626
NmeAIII GCCGAG 3 cut(s) 685, 885, 1352
NmuCI GTSAC 3 cut(s) 790, 1197, 1222
NspI RCATGY 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 271
PciSI GCTCTTC 2 cut(s) 1125, 1533
PcsI WCGNNNNNNNCGW 1 cut(s) 868
PfeI GAWTC 4 cut(s) 890, 901, 1228, 1763
PflFI GACNNNGTC 1 cut(s) 876
PinAI ACCGGT 1 cut(s) 1093
PkrI GCNGC 6 cut(s) 115, 314, 394, 397, 478, 911
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 244, 837
PspFI CCCAGC 1 cut(s) 1455
PspGI CCWGG 2 cut(s) 244, 837
PspN4I GGNNCC 5 cut(s) 180, 205, 288, 1625, 1626
PspOMI GGGCCC 1 cut(s) 1623
PspPI GGNCC 7 cut(s) 203, 376, 446, 715, 929, 1623, 1624
PspPPI RGGWCCY 1 cut(s) 203
PsrI GAACNNNNNNTAC 2 cut(s) 1162, 1194
PsyI GACNNNGTC 1 cut(s) 876
RsaI GTAC 3 cut(s) 775, 1491, 1845
RsaNI GTAC 3 cut(s) 774, 1490, 1844
RseI CAYNNNNRTG 2 cut(s) 271, 350
SapI GCTCTTC 2 cut(s) 1125, 1533
SaqAI TTAA 3 cut(s) 348, 624, 729
SatI GCNGC 6 cut(s) 114, 313, 393, 396, 477, 910
Sau3AI GATC 7 cut(s) 988, 1154, 1606, 1648, 1663, 2005, 2023
Sau96I GGNCC 7 cut(s) 203, 376, 446, 715, 929, 1623, 1624
ScaI AGTACT 1 cut(s) 1845
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 3 cut(s) 246, 839, 1718
SduI GDGCHC 5 cut(s) 303, 977, 1373, 1627, 1718
SfaNI GCATC 4 cut(s) 1321, 1339, 1464, 1584
SfcI CTRYAG 1 cut(s) 628
SinI GGWCC 3 cut(s) 203, 376, 929
SmiMI CAYNNNNRTG 2 cut(s) 271, 350
SmlI CTYRAG 1 cut(s) 1869
SmoI CTYRAG 1 cut(s) 1869
SpeI ACTAGT 1 cut(s) 1343
SsiI CCGC 9 cut(s) 182, 477, 710, 894, 979, 1060, 1334, 1477, 1835
SspI AATATT 1 cut(s) 483
SspMI CTAG 6 cut(s) 35, 467, 549, 1298, 1344, 1700
StyD4I CCNGG 3 cut(s) 244, 837, 1716
StyI CCWWGG 3 cut(s) 742, 1125, 1515
TaaI ACNGT 2 cut(s) 773, 1801
TaiI ACGT 2 cut(s) 677, 1209
TaqI TCGA 7 cut(s) 493, 677, 871, 1106, 1266, 1338, 1436
TaqII GACCGA 3 cut(s) 511, 1210, 1756
TatI WGTACW 1 cut(s) 1843
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 4 cut(s) 890, 901, 1228, 1763
Tru1I TTAA 3 cut(s) 348, 624, 729
Tru9I TTAA 3 cut(s) 348, 624, 729
TscAI CASTG 1 cut(s) 813
TseFI GTSAC 3 cut(s) 790, 1197, 1222
TseI GCWGC 5 cut(s) 113, 312, 392, 395, 909
Tsp45I GTSAC 3 cut(s) 790, 1197, 1222
TspDTI ATGAA 6 cut(s) 89, 446, 533, 1413, 1880, 1899
TspGWI ACGGA 2 cut(s) 307, 1292
TspRI CASTG 1 cut(s) 813
Tth111I GACNNNGTC 1 cut(s) 876
VpaK11BI GGWCC 3 cut(s) 203, 376, 929
XagI CCTNNNNNAGG 2 cut(s) 1468, 1587
XapI RAATTY 3 cut(s) 92, 326, 1912
XceI RCATGY 1 cut(s) 653
XmiI GTMKAC 2 cut(s) 2000, 2018
XspI CTAG 6 cut(s) 35, 467, 549, 1298, 1344, 1700
ZrmI AGTACT 1 cut(s) 1845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.