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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 416 |
| AccII | CGCG | 2 cut(s) | 252, 305 |
| AciI | CCGC | 7 cut(s) | 41, 67, 109, 163, 250, 303, 385 |
| AclI | AACGTT | 1 cut(s) | 411 |
| AclWI | GGATC | 1 cut(s) | 566 |
| AcoI | YGGCCR | 2 cut(s) | 42, 247 |
| AcsI | RAATTY | 1 cut(s) | 128 |
| AcyI | GRCGYC | 1 cut(s) | 534 |
| AgsI | TTSAA | 5 cut(s) | 115, 179, 297, 334, 408 |
| AluBI | AGCT | 2 cut(s) | 361, 448 |
| AluI | AGCT | 2 cut(s) | 361, 448 |
| Alw21I | GWGCWC | 1 cut(s) | 450 |
| AlwI | GGATC | 1 cut(s) | 566 |
| AoxI | GGCC | 3 cut(s) | 42, 247, 300 |
| ApeKI | GCWGC | 1 cut(s) | 545 |
| ApoI | RAATTY | 1 cut(s) | 128 |
| AspLEI | GCGC | 2 cut(s) | 254, 393 |
| AspS9I | GGNCC | 1 cut(s) | 300 |
| AsuC2I | CCSGG | 1 cut(s) | 542 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| BanII | GRGCYC | 1 cut(s) | 450 |
| BbsI | GAAGAC | 1 cut(s) | 41 |
| Bbv12I | GWGCWC | 1 cut(s) | 450 |
| BbvI | GCAGC | 1 cut(s) | 532 |
| BceAI | ACGGC | 1 cut(s) | 417 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 527, 561 |
| BcnI | CCSGG | 1 cut(s) | 542 |
| BfaI | CTAG | 2 cut(s) | 257, 362 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 542 |
| BisI | GCNGC | 5 cut(s) | 42, 67, 250, 303, 546 |
| BlsI | GCNGC | 5 cut(s) | 43, 68, 251, 304, 547 |
| Bme1390I | CCNGG | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 1 cut(s) | 300 |
| BmrFI | CCNGG | 1 cut(s) | 542 |
| BmsI | GCATC | 2 cut(s) | 331, 372 |
| BpiI | GAAGAC | 1 cut(s) | 41 |
| BpuEI | CTTGAG | 1 cut(s) | 434 |
| BpuMI | CCSGG | 1 cut(s) | 542 |
| BsaHI | GRCGYC | 1 cut(s) | 534 |
| BsaJI | CCNNGG | 2 cut(s) | 84, 399 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 380, 410 |
| Bse118I | RCCGGY | 1 cut(s) | 245 |
| Bse3DI | GCAATG | 2 cut(s) | 28, 525 |
| BseDI | CCNNGG | 2 cut(s) | 84, 399 |
| BseMI | GCAATG | 2 cut(s) | 28, 525 |
| BseX3I | CGGCCG | 2 cut(s) | 42, 247 |
| BseXI | GCAGC | 1 cut(s) | 532 |
| Bsh1236I | CGCG | 2 cut(s) | 252, 305 |
| Bsh1285I | CGRYCG | 4 cut(s) | 45, 163, 250, 541 |
| BshFI | GGCC | 3 cut(s) | 44, 249, 302 |
| BsiEI | CGRYCG | 4 cut(s) | 45, 163, 250, 541 |
| BsiHKAI | GWGCWC | 1 cut(s) | 450 |
| BsiSI | CCGG | 2 cut(s) | 246, 541 |
| BslFI | GGGAC | 3 cut(s) | 141, 254, 488 |
| BsmFI | GGGAC | 3 cut(s) | 141, 254, 488 |
| BsnI | GGCC | 3 cut(s) | 44, 249, 302 |
| Bsp1286I | GDGCHC | 1 cut(s) | 450 |
| Bsp143I | GATC | 4 cut(s) | 25, 181, 505, 558 |
| Bsp19I | CCATGG | 1 cut(s) | 84 |
| BspACI | CCGC | 7 cut(s) | 41, 67, 109, 163, 250, 303, 385 |
| BspANI | GGCC | 3 cut(s) | 44, 249, 302 |
| BspFNI | CGCG | 2 cut(s) | 252, 305 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspPI | GGATC | 1 cut(s) | 566 |
| BspQI | GCTCTTC | 1 cut(s) | 438 |
| BsrDI | GCAATG | 2 cut(s) | 28, 525 |
| BsrFI | RCCGGY | 1 cut(s) | 245 |
| BssAI | RCCGGY | 1 cut(s) | 245 |
| BssECI | CCNNGG | 2 cut(s) | 84, 399 |
| BssMI | GATC | 4 cut(s) | 25, 181, 505, 558 |
| BssNI | GRCGYC | 1 cut(s) | 534 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst6I | CTCTTC | 1 cut(s) | 438 |
| BstACI | GRCGYC | 1 cut(s) | 534 |
| BstC8I | GCNNGC | 1 cut(s) | 167 |
| BstDSI | CCRYGG | 2 cut(s) | 84, 399 |
| BstFNI | CGCG | 2 cut(s) | 252, 305 |
| BstHHI | GCGC | 2 cut(s) | 254, 393 |
| BstKTI | GATC | 4 cut(s) | 28, 184, 508, 561 |
| BstMBI | GATC | 4 cut(s) | 25, 181, 505, 558 |
| BstMCI | CGRYCG | 4 cut(s) | 45, 163, 250, 541 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 542 |
| BstNSI | RCATGY | 3 cut(s) | 169, 227, 397 |
| BstSCI | CCNGG | 1 cut(s) | 540 |
| BstUI | CGCG | 2 cut(s) | 252, 305 |
| BstV1I | GCAGC | 1 cut(s) | 532 |
| BstV2I | GAAGAC | 1 cut(s) | 41 |
| BstX2I | RGATCY | 1 cut(s) | 558 |
| BstYI | RGATCY | 1 cut(s) | 558 |
| BstZI | CGGCCG | 2 cut(s) | 42, 247 |
| BsuRI | GGCC | 3 cut(s) | 44, 249, 302 |
| BtgI | CCRYGG | 2 cut(s) | 84, 399 |
| Cac8I | GCNNGC | 1 cut(s) | 167 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 2 cut(s) | 254, 393 |
| Cfr10I | RCCGGY | 1 cut(s) | 245 |
| Cfr13I | GGNCC | 1 cut(s) | 300 |
| CseI | GACGC | 2 cut(s) | 275, 542 |
| CviAII | CATG | 7 cut(s) | 85, 166, 224, 394, 440, 467, 503 |
| CviJI | RGCY | 9 cut(s) | 44, 249, 302, 356, 361, 404, 448, 485, 545 |
| CviKI_1 | RGCY | 9 cut(s) | 44, 249, 302, 356, 361, 404, 448, 485, 545 |
| DpnI | GATC | 4 cut(s) | 27, 183, 507, 560 |
| DpnII | GATC | 4 cut(s) | 25, 181, 505, 558 |
| EaeI | YGGCCR | 2 cut(s) | 42, 247 |
| EagI | CGGCCG | 2 cut(s) | 42, 247 |
| Eam1104I | CTCTTC | 1 cut(s) | 438 |
| EarI | CTCTTC | 1 cut(s) | 438 |
| Ecl136II | GAGCTC | 1 cut(s) | 448 |
| EclXI | CGGCCG | 2 cut(s) | 42, 247 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| Eco24I | GRGCYC | 1 cut(s) | 450 |
| Eco52I | CGGCCG | 2 cut(s) | 42, 247 |
| Eco53kI | GAGCTC | 1 cut(s) | 448 |
| EcoICRI | GAGCTC | 1 cut(s) | 448 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 450 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| FaeI | CATG | 7 cut(s) | 88, 169, 227, 397, 443, 470, 506 |
| FaqI | GGGAC | 3 cut(s) | 141, 254, 488 |
| FatI | CATG | 7 cut(s) | 84, 165, 223, 393, 439, 466, 502 |
| FauI | CCCGC | 1 cut(s) | 378 |
| Fnu4HI | GCNGC | 5 cut(s) | 42, 67, 250, 303, 546 |
| FriOI | GRGCYC | 1 cut(s) | 450 |
| Fsp4HI | GCNGC | 5 cut(s) | 42, 67, 250, 303, 546 |
| FspBI | CTAG | 2 cut(s) | 257, 362 |
| GlaI | GCGC | 2 cut(s) | 253, 392 |
| GluI | GCNGC | 5 cut(s) | 42, 67, 250, 303, 546 |
| HaeIII | GGCC | 3 cut(s) | 44, 249, 302 |
| HapII | CCGG | 2 cut(s) | 246, 541 |
| HgaI | GACGC | 2 cut(s) | 275, 542 |
| HhaI | GCGC | 2 cut(s) | 254, 393 |
| Hin1I | GRCGYC | 1 cut(s) | 534 |
| Hin1II | CATG | 7 cut(s) | 88, 169, 227, 397, 443, 470, 506 |
| Hin6I | GCGC | 2 cut(s) | 252, 391 |
| HinP1I | GCGC | 2 cut(s) | 252, 391 |
| HincII | GTYRAC | 1 cut(s) | 91 |
| HindII | GTYRAC | 1 cut(s) | 91 |
| HinfI | GANTC | 1 cut(s) | 367 |
| HpaII | CCGG | 2 cut(s) | 246, 541 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 2 cut(s) | 91, 399 |
| Hpy188III | TCNNGA | 6 cut(s) | 29, 133, 158, 257, 440, 509 |
| Hpy8I | GTNNAC | 2 cut(s) | 91, 399 |
| HpyCH4IV | ACGT | 1 cut(s) | 411 |
| HpyCH4V | TGCA | 3 cut(s) | 59, 169, 344 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 542 |
| HpySE526I | ACGT | 1 cut(s) | 411 |
| Hsp92I | GRCGYC | 1 cut(s) | 534 |
| Hsp92II | CATG | 7 cut(s) | 88, 169, 227, 397, 443, 470, 506 |
| HspAI | GCGC | 2 cut(s) | 252, 391 |
| Kzo9I | GATC | 4 cut(s) | 25, 181, 505, 558 |
| LguI | GCTCTTC | 1 cut(s) | 438 |
| LmnI | GCTCC | 2 cut(s) | 283, 388 |
| LpnPI | CCDG | 2 cut(s) | 259, 554 |
| Lsp1109I | GCAGC | 1 cut(s) | 532 |
| LweI | GCATC | 2 cut(s) | 331, 372 |
| MaeI | CTAG | 2 cut(s) | 257, 362 |
| MaeII | ACGT | 1 cut(s) | 411 |
| MaeIII | GTNAC | 2 cut(s) | 52, 193 |
| MalI | GATC | 4 cut(s) | 27, 183, 507, 560 |
| MboI | GATC | 4 cut(s) | 25, 181, 505, 558 |
| MboII | GAAGA | 6 cut(s) | 46, 191, 285, 455, 535, 538 |
| MflI | RGATCY | 1 cut(s) | 558 |
| MhlI | GDGCHC | 1 cut(s) | 450 |
| MluCI | AATT | 2 cut(s) | 128, 174 |
| MlyI | GAGTC | 1 cut(s) | 376 |
| MnlI | CCTC | 1 cut(s) | 549 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MspI | CCGG | 2 cut(s) | 246, 541 |
| MspR9I | CCNGG | 1 cut(s) | 542 |
| MvnI | CGCG | 2 cut(s) | 252, 305 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 542 |
| NciI | CCSGG | 1 cut(s) | 542 |
| NcoI | CCATGG | 1 cut(s) | 84 |
| NdeII | GATC | 4 cut(s) | 25, 181, 505, 558 |
| NlaIII | CATG | 7 cut(s) | 88, 169, 227, 397, 443, 470, 506 |
| NmeAIII | GCCGAG | 2 cut(s) | 70, 382 |
| NspI | RCATGY | 3 cut(s) | 169, 227, 397 |
| PaeI | GCATGC | 1 cut(s) | 169 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PciSI | GCTCTTC | 1 cut(s) | 438 |
| PkrI | GCNGC | 5 cut(s) | 43, 68, 251, 304, 547 |
| PleI | GAGTC | 1 cut(s) | 375 |
| PpsI | GAGTC | 1 cut(s) | 375 |
| PsiI | TTATAA | 1 cut(s) | 416 |
| Psp124BI | GAGCTC | 1 cut(s) | 450 |
| Psp1406I | AACGTT | 1 cut(s) | 411 |
| PspPI | GGNCC | 1 cut(s) | 300 |
| PsuI | RGATCY | 1 cut(s) | 558 |
| SacI | GAGCTC | 1 cut(s) | 450 |
| SapI | GCTCTTC | 1 cut(s) | 438 |
| SatI | GCNGC | 5 cut(s) | 42, 67, 250, 303, 546 |
| Sau3AI | GATC | 4 cut(s) | 25, 181, 505, 558 |
| Sau96I | GGNCC | 1 cut(s) | 300 |
| SchI | GAGTC | 1 cut(s) | 376 |
| ScrFI | CCNGG | 1 cut(s) | 542 |
| SduI | GDGCHC | 1 cut(s) | 450 |
| SetI | ASST | 4 cut(s) | 277, 363, 414, 450 |
| SfaNI | GCATC | 2 cut(s) | 331, 372 |
| SmlI | CTYRAG | 1 cut(s) | 449 |
| SmoI | CTYRAG | 1 cut(s) | 449 |
| SphI | GCATGC | 1 cut(s) | 169 |
| Sse9I | AATT | 2 cut(s) | 128, 174 |
| SsiI | CCGC | 7 cut(s) | 41, 67, 109, 163, 250, 303, 385 |
| SspMI | CTAG | 2 cut(s) | 257, 362 |
| SstI | GAGCTC | 1 cut(s) | 450 |
| StyD4I | CCNGG | 1 cut(s) | 540 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TaiI | ACGT | 1 cut(s) | 414 |
| TaqI | TCGA | 2 cut(s) | 271, 370 |
| TaqII | GACCGA | 1 cut(s) | 130 |
| TasI | AATT | 2 cut(s) | 128, 174 |
| TauI | GCSGC | 4 cut(s) | 44, 69, 252, 305 |
| TseI | GCWGC | 1 cut(s) | 545 |
| TspDTI | ATGAA | 3 cut(s) | 456, 528, 536 |
| TspGWI | ACGGA | 1 cut(s) | 311 |
| XapI | RAATTY | 1 cut(s) | 128 |
| XbaI | TCTAGA | 1 cut(s) | 256 |
| XceI | RCATGY | 3 cut(s) | 169, 227, 397 |
| XspI | CTAG | 2 cut(s) | 257, 362 |