Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000063

Physical Location & Seq

Genomic Coordinates Forward (+)

43340531 .. 43345194

Gene Structure 4664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3000 bp

ATGGCTGATGATGCTTCAGAACAAGAGGCCGGGTCAGAGGGTGGTGATGCAATAAAAATAAAATCAGCCGAATTCGCAACCAAATTTATGAAGGCTTTCGATGCTTCCAAAGACACACTTCAAAATTCCGTGGTTTGTCAGCTGGCGAAAAACAAAGAACCGCTGGGAATGTGCACACTGGGGCCACATTACTACGCGGGCATGCCGCTGGCCGTGAAGGAGGTACTAGAGGGTTCGTTAGTTGACACGTCATGTCTTGCTTATGGAGCTAGTTGGTCCACCTGGAGCTCTGAGTTCAAACTTCTGCGAGTTTGGCCGAAACTGACCCCTGAGTGGAGCAAATGGGTGCCAAGGATGGAGCATTTCTTTGCTCAAAAATGGAAGGACTATGGAATATATGATAGTATAAAGATGACTGAGCAAGAGATTCATATGGATCGGCCCCTTCTTGCGGCGAGCTTATGCTTCTGGTCGTCCGCAACCAACACCATCAACTTGCCTCTCGGTCCCATGACCCCTACTTTGTTAGACATGGCCGTAATATTTGGGTTTCGGCCGAATGGCGAGGCGGTTTGTGCTACAGCCAAATTCCCTAGTTCCCTCCATGCTAGTCTGAAACCTAAAGCAATAAAGAATGACAAGAAGGCTAAAGATGACGCAGAAGCTAAGGCAAAGCAATTACTCAACTATAGCACCTTTTATGCCACACATGCAGTTGATGAAGCAGTTTCAGAAACTAGGAGGCAACCTCCAAAACAGCACGAACACGCCGCCTTCCTTCTCTATTGGCTTTGTAAGTTTGCATTTTGCTCCAAGTCAAATAAGTGCACTTTTGAATTTGTTGGTATTGCAGAAGCTCTTAGCATGGGTAGACCTCTAGCCCTTGGGCCATTTGTTCTTGCTCGCCTCTACCGTGCTTTACGCAATGCAGTGATCGATAATATGAATTTGGATATTGGAGGGCCATTATGGATGTTTCAAGTGTGGATACAGACCTATTTTCATGAGCTCCGGCCGACATGTCCTCCATTTGTCCCCACAATGACACTTGGCCTTCAGATTATTGCCCTTGGCACTCATACACATTCAGCCGTGCAGTGTTTTGCCTTCTTTTATTCAAAAAAGACTATGTCCAAAGATGAGTTTGCCATATGTTACAGCCGAGATCATCCTTCTTGCCTTGAGATCAACATATCAAAACCATGGGATAAAAAATTTGAATTGGATGTGATTCTGACTTGGGGGAGTTTTCTGATCTCTCGAGACCTGAACTATGGCCTCAAAGGCACCGTGGGTCGGTATGGTGTGGAGGTCTATCTTCCCAATTTTGTTGCACGTCAGCTTGGCTTCATACAAAGTTGTCCGGCCTTATTCTTGATGTCAAGAAACTACTTCTCGTCATGGAGAGATGGGTTCACACGAACTTCTCAGTGTTCTGCCGTTGGTAACTACTATGAAGAGCAATTTGGCAAGTTTGAGAGGTCCGGCCTAAAGCCTCGTTGTCCTGATCATAGAGCCACCCCACACTTCCAAGCTTGGTGGTCGACTTTTATCATGAAAAATCTTGGAAAGGACTTGGCTGGGACCCAACGTGCTGCTTTACAAGGACTTCCGAACTTGCTAGGCCCCAAGGAAGGTAATGGTAAGAAGAAAGCACCGGATGGCAAGTTAAAATCAACCAAAGGATCCTCTAAACAAGGACAAACATCGAAGAAACGTGGCTCAACATTGGGGTATACTCGGAACCCCAAGAAAACAAAGAAATCATCGGATGTGGTGGAGAATTCGGTCACAAACCCGACGAACACTATGGTTAGTGAGGACATATTTTTTGAGGCTAATATGGATGATGGCCACGATGCTTTGGCTGAAAACCAAAATACGTCTGAAATTGAGGATATGGCCGAAACTGGTGACGCCTCGATCCATAGCGCGGACTCGGCTGATAGCGAAGGTTATTCGGAAGAAGCTCAATCAGAAAGCGGCGACCAAGAGAGAGATGGCTGCATTGATCATTCTTTGCCCCCACTTGAAAACTCCATGATTGAGATTGACATGGACGACTTGGGTGAGAGCCAACTTCACAACACATCGAGCATTGGCCAACAGCTTGCCATATCAAACAACTTTTCCAAGGATGTTGAAAACACAGATGCACGTGGCCGAGAAACACTACTTATCCATCAGACATTGGTTCAGGTGGGAGAATCTCGAAGCAGTACAACCCTAGAATTGGCTCTTCTCAACCAAACTGAATCTCATCCCCCTATGTTCGGAACACTTACCTCTCCTCCTAATGACGGGATGTGTCAAAGTGAGCAAGCTATCGTTTACGCTCCATCTTCGGCCGAGCTTGTGGATCATACAGTGGGTGATCTTGGTTTGGACCTACTTCAATTCCTAAATACTCTAGACAACACCACGAGTCCTGAAGAGGAAAAACTTGAAACAACCGAAACCAAAAAGGCACTTGAGACGGTCAGACAGTTTTTGGGTTGTGATGTGAGAACAGTGACCGAGGCTAGTTTTCTCTCTTTCAAGGAGGCGGTTGAAGTACTTATTTCAGCCAAACATGTCTCTCAGGTAGAGGCTTATGAAGTTCATGCTCGTTTGGCTGTTGTAAATTTTAGTCTCTCTCCTTGTCTAGAAGCCCAAAAAGAGTTTGAAGCAGGTGAGAAGTTGAAAAGTGAGTACGATGACATTCGCCAATCCACCGATCTTGGCCAACTCCAAAAGTTGAAGACTTCTTTGGACGAAGGAAGGCAAAAAGTGCTTGATCTGAGGAAGCAGTTGGCCGAAGCTGAAAAGCAAGTCAAAGTCACTTCGGCCGCCATCCGAACCATTGTTCCCCAACAAGATCTCACCAAGTATAGCTTGATTCTGTCATCGGTCAAGTCGTATAACAAGAAGAGGGGCATCTTGAAGCGAAAGGTCGACCAAGGTATGCAAGACTTAGAAGATGTTAAAGAAGCTCTTCGGTCACTCTTGCCCACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

999

Amino Acids

111.25

Weight (kDa)

5.81

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	131 - 514	5.8e-44	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica	MD05G1017000.v1.1
prunus_persica	Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis	pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis	RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata	RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora	Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii	Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa	Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha	Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana	Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2660
Acc36I	ACCTGC	1 cut(s)	2660
AccB1I	GGYRCC	2 cut(s)	346, 1286
AccI	GTMKAC	4 cut(s)	871, 1544, 1736, 2934
AccII	CGCG	2 cut(s)	197, 1934
AclWI	GGATC	5 cut(s)	444, 1680, 1693, 1918, 2367
AcsI	RAATTY	9 cut(s)	71, 83, 124, 587, 836, 946, 1214, 1783, 2623
AcuI	CTGAAG	2 cut(s)	1040, 2451
AcvI	CACGTG	1 cut(s)	2159
AcyI	GRCGYC	1 cut(s)	1917
AfaI	GTAC	4 cut(s)	225, 2221, 2556, 2693
AfiI	CCNNNNNNNGG	8 cut(s)	333, 451, 1296, 1634, 1933, 2233, 2273, 2300
AflIII	ACRYGT	3 cut(s)	246, 1019, 2572
AjiI	CACGTC	2 cut(s)	249, 1337
AjnI	CCWGG	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	4 cut(s)	1449, 1481, 2732, 2764
AloI	GAACNNNNNNTCC	2 cut(s)	2830, 2862
Alw21I	GWGCWC	4 cut(s)	176, 290, 830, 1011
Alw26I	GTCTC	4 cut(s)	1257, 2468, 2581, 2636
Alw44I	GTGCAC	2 cut(s)	172, 826
AlwI	GGATC	5 cut(s)	444, 1680, 1693, 1918, 2367
Ama87I	CYCGRG	1 cut(s)	1260
ApaLI	GTGCAC	2 cut(s)	172, 826
ApeKI	GCWGC	2 cut(s)	1595, 2004
ApoI	RAATTY	9 cut(s)	71, 83, 124, 587, 836, 946, 1214, 1783, 2623
ArsI	GACNNNNNNTTYG	4 cut(s)	505, 537, 1814, 1846
Asp700I	GAANNNNTTC	2 cut(s)	95, 2973
AspLEI	GCGC	1 cut(s)	1934
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	6 cut(s)	56, 1925, 2081, 2384, 2684, 2854
AvaI	CYCGRG	1 cut(s)	1260
AvaII	GGWCC	5 cut(s)	276, 506, 1482, 1584, 2386
BaeGI	GKGCMC	2 cut(s)	176, 830
BalI	TGGCCA	3 cut(s)	1854, 2103, 2724
BamHI	GGATCC	1 cut(s)	1685
BanI	GGYRCC	2 cut(s)	346, 1286
BanII	GRGCYC	2 cut(s)	290, 1011
BauI	CACGAG	1 cut(s)	2422
BbrPI	CACGTG	1 cut(s)	2159
BbsI	GAAGAC	1 cut(s)	2747
Bbv12I	GWGCWC	4 cut(s)	176, 290, 830, 1011
BbvI	GCAGC	2 cut(s)	1582, 1991
BccI	CCATC	9 cut(s)	349, 497, 1403, 1655, 1844, 1994, 2190, 2347, 2840
BceAI	ACGGC	4 cut(s)	197, 521, 1076, 1424
BciT130I	CCWGG	1 cut(s)	283
BciVI	GTATCC	1 cut(s)	981
BclI	TGATCA	2 cut(s)	1507, 2011
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	1257, 2468, 2581, 2636
BfmI	CTRYAG	2 cut(s)	579, 688
BfuAI	ACCTGC	1 cut(s)	2660
BfuI	GTATCC	1 cut(s)	981
BglI	GCCNNNNNGGC	1 cut(s)	1284
BglII	AGATCT	1 cut(s)	2857
BisI	GCNGC	7 cut(s)	206, 453, 771, 1596, 1984, 2005, 2829
BlsI	GCNGC	7 cut(s)	207, 454, 772, 1597, 1985, 2006, 2830
BmcAI	AGTACT	1 cut(s)	2556
Bme1390I	CCNGG	2 cut(s)	31, 283
Bme18I	GGWCC	5 cut(s)	276, 506, 1482, 1584, 2386
BmeT110I	CYCGRG	1 cut(s)	1260
BmgBI	CACGTC	2 cut(s)	249, 1337
BmrFI	CCNGG	2 cut(s)	31, 283
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	5 cut(s)	37, 91, 1849, 2143, 2925
BmuI	ACTGGG	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	2747
BplI	GAGNNNNNCTC	2 cut(s)	733, 765
BpmI	CTGGAG	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	1202, 2492
BpuMI	CCSGG	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	936
BsaAI	YACGTR	1 cut(s)	2159
BsaHI	GRCGYC	1 cut(s)	1917
BsaI	GGTCTC	1 cut(s)	1257
BsaWI	WCCGGW	1 cut(s)	1657
BsaXI	ACNNNNNCTCC	4 cut(s)	1009, 1039, 2275, 2305
Bsc4I	CCNNNNNNNGG	8 cut(s)	333, 451, 1296, 1634, 1933, 2233, 2273, 2300
Bse1I	ACTGG	2 cut(s)	183, 1915
Bse3DI	GCAATG	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	936
BseLI	CCNNNNNNNGG	8 cut(s)	333, 451, 1296, 1634, 1933, 2233, 2273, 2300
BseMI	GCAATG	1 cut(s)	931
BseMII	CTCAG	6 cut(s)	282, 321, 408, 1442, 2594, 2771
BseNI	ACTGG	2 cut(s)	183, 1915
BseRI	GAGGAG	1 cut(s)	2280
BseSI	GKGCMC	2 cut(s)	176, 830
BseX3I	CGGCCG	4 cut(s)	554, 1013, 2346, 2826
BseXI	GCAGC	2 cut(s)	1582, 1991
BseYI	CCCAGC	2 cut(s)	163, 1580
BsgI	GTGCAG	1 cut(s)	1115
Bsh1236I	CGCG	2 cut(s)	197, 1934
Bsh1285I	CGRYCG	4 cut(s)	557, 1016, 2349, 2829
BshNI	GGYRCC	2 cut(s)	346, 1286
BshVI	ATCGAT	1 cut(s)	936
BsiEI	CGRYCG	4 cut(s)	557, 1016, 2349, 2829
BsiHKAI	GWGCWC	4 cut(s)	176, 290, 830, 1011
BsiHKCI	CYCGRG	1 cut(s)	1260
BsiSI	CCGG	5 cut(s)	30, 1012, 1364, 1485, 1658
BslFI	GGGAC	3 cut(s)	492, 1019, 1597
BslI	CCNNNNNNNGG	8 cut(s)	333, 451, 1296, 1634, 1933, 2233, 2273, 2300
BsmAI	GTCTC	4 cut(s)	1257, 2468, 2581, 2636
BsmBI	CGTCTC	1 cut(s)	2468
BsmFI	GGGAC	3 cut(s)	492, 1019, 1597
Bso31I	GGTCTC	1 cut(s)	1257
BsoBI	CYCGRG	1 cut(s)	1260
Bsp1286I	GDGCHC	4 cut(s)	176, 290, 830, 1011
Bsp19I	CCATGG	1 cut(s)	1202
BspCNI	CTCAG	6 cut(s)	283, 322, 409, 1441, 2593, 2772
BspDI	ATCGAT	1 cut(s)	936
BspFNI	CGCG	2 cut(s)	197, 1934
BspHI	TCATGA	2 cut(s)	1003, 1554
BspMI	ACCTGC	1 cut(s)	2660
BspPI	GGATC	5 cut(s)	444, 1680, 1693, 1918, 2367
BspQI	GCTCTTC	3 cut(s)	1452, 2244, 2979
BspT107I	GGYRCC	2 cut(s)	346, 1286
BspTNI	GGTCTC	1 cut(s)	1257
BsrDI	GCAATG	1 cut(s)	931
BsrI	ACTGG	2 cut(s)	183, 1915
BssNAI	GTATAC	1 cut(s)	1737
BssNI	GRCGYC	1 cut(s)	1917
BssSI	CACGAG	1 cut(s)	2422
BssT1I	CCWWGG	7 cut(s)	350, 883, 1069, 1202, 1629, 2133, 2938
Bst1107I	GTATAC	1 cut(s)	1737
Bst2BI	CACGAG	1 cut(s)	2422
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	6 cut(s)	914, 1291, 2368, 2479, 2487, 2512
Bst6I	CTCTTC	5 cut(s)	1452, 2244, 2427, 2903, 2979
BstACI	GRCGYC	1 cut(s)	1917
BstAPI	GCANNNNNTGC	1 cut(s)	2770
BstBAI	YACGTR	1 cut(s)	2159
BstC8I	GCNNGC	8 cut(s)	144, 199, 203, 210, 457, 904, 2112, 2322
BstDEI	CTNAG	9 cut(s)	291, 330, 417, 666, 860, 1428, 2580, 2780, 2953
BstDSI	CCRYGG	3 cut(s)	129, 1202, 1290
BstFNI	CGCG	2 cut(s)	197, 1934
BstHHI	GCGC	1 cut(s)	1934
BstMAI	GTCTC	4 cut(s)	1257, 2468, 2581, 2636
BstMCI	CGRYCG	4 cut(s)	557, 1016, 2349, 2829
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	4 cut(s)	205, 713, 1023, 2576
BstSCI	CCNGG	2 cut(s)	29, 281
BstSFI	CTRYAG	2 cut(s)	579, 688
BstSLI	GKGCMC	2 cut(s)	176, 830
BstUI	CGCG	2 cut(s)	197, 1934
BstV1I	GCAGC	2 cut(s)	1582, 1991
BstV2I	GAAGAC	1 cut(s)	2747
BstX2I	RGATCY	2 cut(s)	1685, 2857
BstYI	RGATCY	2 cut(s)	1685, 2857
BstZ17I	GTATAC	1 cut(s)	1737
BstZI	CGGCCG	4 cut(s)	554, 1013, 2346, 2826
Bsu15I	ATCGAT	1 cut(s)	936
BsuI	GTATCC	1 cut(s)	981
BsuTUI	ATCGAT	1 cut(s)	936
BtgI	CCRYGG	3 cut(s)	129, 1202, 1290
BtrI	CACGTC	2 cut(s)	249, 1337
BtsI	GCAGTG	2 cut(s)	936, 1103
BtsIMutI	CAGTG	7 cut(s)	176, 936, 1103, 1436, 2373, 2517, 2991
BveI	ACCTGC	1 cut(s)	2660
Cac8I	GCNNGC	8 cut(s)	144, 199, 203, 210, 457, 904, 2112, 2322
CciI	TCATGA	2 cut(s)	1003, 1554
CfoI	GCGC	1 cut(s)	1934
ClaI	ATCGAT	1 cut(s)	936
CseI	GACGC	2 cut(s)	665, 1925
Csp6I	GTAC	4 cut(s)	224, 2220, 2555, 2692
CspCI	CAANNNNNGTGG	4 cut(s)	1520, 1555, 2701, 2736
CviQI	GTAC	4 cut(s)	224, 2220, 2555, 2692
DdeI	CTNAG	9 cut(s)	291, 330, 417, 666, 860, 1428, 2580, 2780, 2953
EagI	CGGCCG	4 cut(s)	554, 1013, 2346, 2826
Eam1104I	CTCTTC	5 cut(s)	1452, 2244, 2427, 2903, 2979
EarI	CTCTTC	5 cut(s)	1452, 2244, 2427, 2903, 2979
Ecl136II	GAGCTC	2 cut(s)	288, 1009
EclXI	CGGCCG	4 cut(s)	554, 1013, 2346, 2826
Eco130I	CCWWGG	7 cut(s)	350, 883, 1069, 1202, 1629, 2133, 2938
Eco24I	GRGCYC	2 cut(s)	290, 1011
Eco31I	GGTCTC	1 cut(s)	1257
Eco47I	GGWCC	5 cut(s)	276, 506, 1482, 1584, 2386
Eco52I	CGGCCG	4 cut(s)	554, 1013, 2346, 2826
Eco53kI	GAGCTC	2 cut(s)	288, 1009
Eco57I	CTGAAG	2 cut(s)	1040, 2451
Eco72I	CACGTG	1 cut(s)	2159
Eco88I	CYCGRG	1 cut(s)	1260
EcoICRI	GAGCTC	2 cut(s)	288, 1009
EcoO109I	RGGNCCY	2 cut(s)	1584, 1625
EcoRI	GAATTC	2 cut(s)	71, 1783
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	7 cut(s)	350, 883, 1069, 1202, 1629, 2133, 2938
EcoT38I	GRGCYC	2 cut(s)	290, 1011
ErhI	CCWWGG	7 cut(s)	350, 883, 1069, 1202, 1629, 2133, 2938
Esp3I	CGTCTC	1 cut(s)	2468
FalI	AAGNNNNNCTT	6 cut(s)	102, 134, 2858, 2890, 2958, 2990
FaqI	GGGAC	3 cut(s)	492, 1019, 1597
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	2 cut(s)	432, 1151
FbaI	TGATCA	2 cut(s)	1507, 2011
FblI	GTMKAC	4 cut(s)	871, 1544, 1736, 2934
Fnu4HI	GCNGC	7 cut(s)	206, 453, 771, 1596, 1984, 2005, 2829
FriOI	GRGCYC	2 cut(s)	290, 1011
Fsp4HI	GCNGC	7 cut(s)	206, 453, 771, 1596, 1984, 2005, 2829
GlaI	GCGC	1 cut(s)	1933
GluI	GCNGC	7 cut(s)	206, 453, 771, 1596, 1984, 2005, 2829
GsaI	CCCAGC	2 cut(s)	167, 1584
GsuI	CTGGAG	1 cut(s)	304
HapII	CCGG	5 cut(s)	30, 1012, 1364, 1485, 1658
HgaI	GACGC	2 cut(s)	665, 1925
HhaI	GCGC	1 cut(s)	1934
Hin1I	GRCGYC	1 cut(s)	1917
Hin6I	GCGC	1 cut(s)	1932
HinP1I	GCGC	1 cut(s)	1932
HincII	GTYRAC	3 cut(s)	244, 1545, 2935
HindII	GTYRAC	3 cut(s)	244, 1545, 2935
HindIII	AAGCTT	1 cut(s)	1533
HinfI	GANTC	7 cut(s)	427, 1231, 1937, 2207, 2255, 2425, 2878
HpaII	CCGG	5 cut(s)	30, 1012, 1364, 1485, 1658
HphI	GGTGA	6 cut(s)	56, 1925, 2081, 2384, 2684, 2854
Hpy99I	CGWCG	1 cut(s)	1804
HpyCH4III	ACNGT	6 cut(s)	914, 1291, 2368, 2479, 2487, 2512
HpyCH4IV	ACGT	6 cut(s)	248, 1336, 1591, 1717, 1883, 2158
HpyF3I	CTNAG	9 cut(s)	291, 330, 417, 666, 860, 1428, 2580, 2780, 2953
HpySE526I	ACGT	6 cut(s)	248, 1336, 1591, 1717, 1883, 2158
Hsp92I	GRCGYC	1 cut(s)	1917
HspAI	GCGC	1 cut(s)	1932
KflI	GGGWCCC	1 cut(s)	1584
Ksp22I	TGATCA	2 cut(s)	1507, 2011
LguI	GCTCTTC	3 cut(s)	1452, 2244, 2979
LmnI	GCTCC	7 cut(s)	266, 285, 336, 358, 815, 1014, 2341
Lsp1109I	GCAGC	2 cut(s)	1582, 1991
LweI	GCATC	5 cut(s)	37, 91, 1849, 2143, 2925
MaeII	ACGT	6 cut(s)	248, 1336, 1591, 1717, 1883, 2158
MaeIII	GTNAC	7 cut(s)	1154, 1445, 1789, 1913, 2512, 2818, 2979
MflI	RGATCY	2 cut(s)	1685, 2857
MhlI	GDGCHC	4 cut(s)	176, 290, 830, 1011
MlsI	TGGCCA	3 cut(s)	1854, 2103, 2724
MluNI	TGGCCA	3 cut(s)	1854, 2103, 2724
MlyI	GAGTC	2 cut(s)	1931, 2434
Mox20I	TGGCCA	3 cut(s)	1854, 2103, 2724
MroXI	GAANNNNTTC	2 cut(s)	95, 2973
MscI	TGGCCA	3 cut(s)	1854, 2103, 2724
MseI	TTAA	2 cut(s)	1670, 2964
Msp20I	TGGCCA	3 cut(s)	1854, 2103, 2724
MspA1I	CMGCKG	3 cut(s)	142, 163, 208
MspI	CCGG	5 cut(s)	30, 1012, 1364, 1485, 1658
MspR9I	CCNGG	2 cut(s)	31, 283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	197, 1934
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	1202
NdeI	CATATG	2 cut(s)	432, 1151
NmeAIII	GCCGAG	4 cut(s)	1187, 1919, 2189, 2374
NmuCI	GTSAC	5 cut(s)	1789, 1913, 2512, 2818, 2979
NspI	RCATGY	4 cut(s)	205, 713, 1023, 2576
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	1260
PagI	TCATGA	2 cut(s)	1003, 1554
PaqCI	CACCTGC	1 cut(s)	2660
PciI	ACATGT	2 cut(s)	1019, 2572
PciSI	GCTCTTC	3 cut(s)	1452, 2244, 2979
PcsI	WCGNNNNNNNCGW	2 cut(s)	910, 2894
PdmI	GAANNNNTTC	2 cut(s)	95, 2973
PfeI	GAWTC	5 cut(s)	427, 1231, 2207, 2255, 2878
PflFI	GACNNNGTC	1 cut(s)	1129
PkrI	GCNGC	7 cut(s)	207, 454, 772, 1597, 1985, 2006, 2830
PleI	GAGTC	2 cut(s)	1931, 2433
PmaCI	CACGTG	1 cut(s)	2159
PmlI	CACGTG	1 cut(s)	2159
PpsI	GAGTC	2 cut(s)	1931, 2433
Ppu21I	YACGTR	1 cut(s)	2159
PpuMI	RGGWCCY	1 cut(s)	1584
PscI	ACATGT	2 cut(s)	1019, 2572
Psp124BI	GAGCTC	2 cut(s)	290, 1011
Psp5II	RGGWCCY	1 cut(s)	1584
Psp6I	CCWGG	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	2159
PspFI	CCCAGC	2 cut(s)	163, 1580
PspGI	CCWGG	1 cut(s)	281
PspPPI	RGGWCCY	1 cut(s)	1584
PsuI	RGATCY	2 cut(s)	1685, 2857
PsyI	GACNNNGTC	1 cut(s)	1129
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	4 cut(s)	225, 2221, 2556, 2693
RsaNI	GTAC	4 cut(s)	224, 2220, 2555, 2692
SacI	GAGCTC	2 cut(s)	290, 1011
SalI	GTCGAC	2 cut(s)	1543, 2933
SapI	GCTCTTC	3 cut(s)	1452, 2244, 2979
SaqAI	TTAA	2 cut(s)	1670, 2964
SatI	GCNGC	7 cut(s)	206, 453, 771, 1596, 1984, 2005, 2829
ScaI	AGTACT	1 cut(s)	2556
SchI	GAGTC	2 cut(s)	1931, 2434
ScrFI	CCNGG	2 cut(s)	31, 283
SduI	GDGCHC	4 cut(s)	176, 290, 830, 1011
SfaNI	GCATC	5 cut(s)	37, 91, 1849, 2143, 2925
SfcI	CTRYAG	2 cut(s)	579, 688
Sfr274I	CTCGAG	1 cut(s)	1260
SinI	GGWCC	5 cut(s)	276, 506, 1482, 1584, 2386
SlaI	CTCGAG	1 cut(s)	1260
SmlI	CTYRAG	3 cut(s)	1181, 1260, 2471
SmoI	CTYRAG	3 cut(s)	1181, 1260, 2471
SphI	GCATGC	1 cut(s)	205
SspI	AATATT	1 cut(s)	543
SstI	GAGCTC	2 cut(s)	290, 1011
StyD4I	CCNGG	2 cut(s)	29, 281
StyI	CCWWGG	7 cut(s)	350, 883, 1069, 1202, 1629, 2133, 2938
TaaI	ACNGT	6 cut(s)	914, 1291, 2368, 2479, 2487, 2512
TaiI	ACGT	6 cut(s)	251, 1339, 1594, 1720, 1886, 2161
TaqI	TCGA	9 cut(s)	99, 936, 1261, 1544, 1709, 1922, 2093, 2212, 2934
TaqII	GACCGA	5 cut(s)	494, 1777, 2531, 2878, 2967
TatI	WGTACW	2 cut(s)	2219, 2554
TauI	GCSGC	5 cut(s)	208, 455, 773, 1986, 2831
TfiI	GAWTC	5 cut(s)	427, 1231, 2207, 2255, 2878
Tru1I	TTAA	2 cut(s)	1670, 2964
Tru9I	TTAA	2 cut(s)	1670, 2964
TscAI	CASTG	7 cut(s)	183, 936, 1103, 1436, 2373, 2517, 2998
TseFI	GTSAC	5 cut(s)	1789, 1913, 2512, 2818, 2979
TseI	GCWGC	2 cut(s)	1595, 2004
Tsp45I	GTSAC	5 cut(s)	1789, 1913, 2512, 2818, 2979
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	7 cut(s)	183, 936, 1103, 1436, 2373, 2517, 2998
Tth111I	GACNNNGTC	1 cut(s)	1129
VneI	GTGCAC	2 cut(s)	172, 826
VpaK11BI	GGWCC	5 cut(s)	276, 506, 1482, 1584, 2386
XapI	RAATTY	9 cut(s)	71, 83, 124, 587, 836, 946, 1214, 1783, 2623
XbaI	TCTAGA	2 cut(s)	2410, 2644
XceI	RCATGY	4 cut(s)	205, 713, 1023, 2576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1997
XhoI	CTCGAG	1 cut(s)	1260
XmiI	GTMKAC	4 cut(s)	871, 1544, 1736, 2934
XmnI	GAANNNNTTC	2 cut(s)	95, 2973
ZrmI	AGTACT	1 cut(s)	2556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.