RchiOBHm_Chr5g0004321

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000063
Physical Location & Seq
Reverse (-)
2776070 .. 2779273
3204 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28558

Sequence Viewer

Length: 957 bp
ATGAATAGAATAACACAACGAGTCCCGAATGAAGGTGGGGTACGTCAACTTGGCCCAAGTTTCCATAGTGATATACCGGCCGATGTGGAAAAAGTTGTGAGCCCGCATGAAGTAGATGATTCTAGCTACTTCAGTGAAGGAAAAGCATGGGGAACATGGGGAACAAAACCAGGAAAATGGCCTGGTGAAACGGCCAACTGGATTCCGTGGGTAGAACGAGTCGAGAAGCGATTTGGGGATGTATGGAGACGGCTTGGGATCTACGACGCCATCAAGCTTTCCACCATTACTATTCCTTGTGACCGCCCCTTGCTGGTTGCCGCGATGTGTTTTTGGAGTTCTCAGACAAACTCTCTTGAGCTTCAGTTTGGTGCACTGAGTCTGACCTTGATTGATAAAGCGGCCATTATAGGCCTGCCGCCACATGGGCAAGTGGTGGATATTGTATTCGCAAAAGGAAAGTTTGACATTGATCTTGGTGGTGAGCTAAGAGATCGAAGTAAAGGCACACCGACCGTTGCCAATTATAATACATGGATTGAGGTGTTTAACAGCGGCTTGGTGAGGAAGTCACCTGATAGTGATGGCAGTCCGAAGGAGAAAGAGGAAAGCCAACAGGAGACAATGGAAGTTACTCCTGTAGAGCATGCGGCGTTTCTTGCCTTTTGGATATGTAAGTTCTTAGTGTGCACAACTTCTAAAAAAGTGAATGTGGAATACTACAAGTTGGTTGAAGCATTAGCAAGCAAAGAAGTGCAAGAGAGTGATCAGCCATTAGCTCTTGGTCCATTTGTGCTAGCCCACTTGTACAGATGTCTTCACCATTGTGTGACTAAAGGAGTGAACCCAAATTGGCCTGGGCCATTGTGGATTTTTCAGTTGTGGCTTCAGACTTATTTCCCTGCGTTCAGACAACCAGGTATAGCATTGGCCGCAGACACCACTCTTGGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

318

Amino Acids

35.56

Weight (kDa)

6.01

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 86 - 304 7.4e-29 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AccII CGCG 1 cut(s) 323
AciI CCGC 8 cut(s) 104, 304, 321, 401, 419, 555, 650, 933
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 4 cut(s) 78, 192, 402, 930
AcuI CTGAAG 3 cut(s) 115, 347, 872
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 2 cut(s) 42, 809
AfiI CCNNNNNNNGG 3 cut(s) 32, 313, 425
AgsI TTSAA 1 cut(s) 734
AjnI CCWGG 4 cut(s) 169, 181, 856, 916
AleI CACNNNNGTG 1 cut(s) 825
AluBI AGCT 5 cut(s) 126, 277, 361, 487, 779
AluI AGCT 5 cut(s) 126, 277, 361, 487, 779
Alw21I GWGCWC 2 cut(s) 376, 692
Alw26I GTCTC 2 cut(s) 241, 614
Alw44I GTGCAC 2 cut(s) 372, 688
AlwI GGATC 1 cut(s) 266
AoxI GGCC 9 cut(s) 52, 78, 179, 192, 402, 412, 854, 860, 930
ApaLI GTGCAC 2 cut(s) 372, 688
AspS9I GGNCC 3 cut(s) 53, 785, 860
AsuHPI GGTGA 5 cut(s) 197, 494, 564, 574, 812
AsuNHI GCTAGC 1 cut(s) 796
AvaII GGWCC 1 cut(s) 785
BaeGI GKGCMC 2 cut(s) 376, 692
BanII GRGCYC 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BbsI GAAGAC 1 cut(s) 809
Bbv12I GWGCWC 2 cut(s) 376, 692
BccI CCATC 2 cut(s) 278, 578
BceAI ACGGC 2 cut(s) 207, 266
BciT130I CCWGG 4 cut(s) 171, 183, 858, 918
BclI TGATCA 1 cut(s) 766
BcoDI GTCTC 2 cut(s) 241, 614
BfaI CTAG 2 cut(s) 123, 797
BfmI CTRYAG 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 427
BisI GCNGC 6 cut(s) 321, 402, 419, 556, 651, 933
BlsI GCNGC 6 cut(s) 322, 403, 420, 557, 652, 934
Bme1390I CCNGG 4 cut(s) 171, 183, 858, 918
Bme18I GGWCC 1 cut(s) 785
BmgT120I GGNCC 3 cut(s) 53, 785, 860
BmrFI CCNGG 4 cut(s) 171, 183, 858, 918
BmtI GCTAGC 1 cut(s) 800
BpiI GAAGAC 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 206, 857
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 313, 425
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 4 cut(s) 171, 183, 858, 918
BseDI CCNNGG 2 cut(s) 206, 857
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 3 cut(s) 32, 313, 425
BseMII CTCAG 2 cut(s) 356, 368
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 2 cut(s) 376, 692
BseX3I CGGCCG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 323
Bsh1285I CGRYCG 2 cut(s) 81, 516
BshFI GGCC 9 cut(s) 54, 80, 181, 194, 404, 414, 856, 862, 932
BsiEI CGRYCG 2 cut(s) 81, 516
BsiHKAI GWGCWC 2 cut(s) 376, 692
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 3 cut(s) 32, 313, 425
BsmAI GTCTC 2 cut(s) 241, 614
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 9 cut(s) 54, 80, 181, 194, 404, 414, 856, 862, 932
Bsp1286I GDGCHC 3 cut(s) 104, 376, 692
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 4 cut(s) 258, 472, 493, 766
BspACI CCGC 8 cut(s) 104, 304, 321, 401, 419, 555, 650, 933
BspANI GGCC 9 cut(s) 54, 80, 181, 194, 404, 414, 856, 862, 932
BspCNI CTCAG 2 cut(s) 355, 369
BspFNI CGCG 1 cut(s) 323
BspOI GCTAGC 1 cut(s) 800
BspPI GGATC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 807
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 206, 857
BssMI GATC 4 cut(s) 258, 472, 493, 766
BssNI GRCGYC 1 cut(s) 267
Bst2UI CCWGG 4 cut(s) 171, 183, 858, 918
Bst4CI ACNGT 1 cut(s) 517
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 5 cut(s) 104, 416, 648, 745, 798
BstDEI CTNAG 4 cut(s) 342, 377, 488, 682
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 323
BstKTI GATC 4 cut(s) 261, 475, 496, 769
BstMAI GTCTC 2 cut(s) 241, 614
BstMBI GATC 4 cut(s) 258, 472, 493, 766
BstMCI CGRYCG 2 cut(s) 81, 516
BstMWI GCNNNNNNNGC 3 cut(s) 427, 659, 932
BstNI CCWGG 4 cut(s) 171, 183, 858, 918
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 4 cut(s) 169, 181, 856, 916
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 2 cut(s) 376, 692
BstUI CGCG 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 809
BstX2I RGATCY 1 cut(s) 258
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 9 cut(s) 54, 80, 181, 194, 404, 414, 856, 862, 932
BtgI CCRYGG 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 139, 374
Cac8I GCNNGC 5 cut(s) 104, 416, 648, 745, 798
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 53, 785, 860
CseI GACGC 1 cut(s) 275
CsiI ACCWGGT 1 cut(s) 916
Csp6I GTAC 2 cut(s) 41, 808
CviAII CATG 6 cut(s) 107, 147, 156, 425, 534, 647
CviQI GTAC 2 cut(s) 41, 808
DdeI CTNAG 4 cut(s) 342, 377, 488, 682
DpnI GATC 4 cut(s) 260, 474, 495, 768
DpnII GATC 4 cut(s) 258, 472, 493, 766
EaeI YGGCCR 4 cut(s) 78, 192, 402, 930
EagI CGGCCG 1 cut(s) 78
EclXI CGGCCG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 785
Eco52I CGGCCG 1 cut(s) 78
Eco57I CTGAAG 3 cut(s) 115, 347, 872
EcoRII CCWGG 4 cut(s) 169, 181, 856, 916
EcoT38I GRGCYC 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 6 cut(s) 110, 150, 159, 428, 537, 650
FaqI GGGAC 1 cut(s) 8
FatI CATG 6 cut(s) 106, 146, 155, 424, 533, 646
FauI CCCGC 1 cut(s) 111
FbaI TGATCA 1 cut(s) 766
Fnu4HI GCNGC 6 cut(s) 321, 402, 419, 556, 651, 933
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 6 cut(s) 321, 402, 419, 556, 651, 933
FspBI CTAG 2 cut(s) 123, 797
GluI GCNGC 6 cut(s) 321, 402, 419, 556, 651, 933
HaeIII GGCC 9 cut(s) 54, 80, 181, 194, 404, 414, 856, 862, 932
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 6 cut(s) 110, 150, 159, 428, 537, 650
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 21, 119, 202, 219, 379
HpaII CCGG 1 cut(s) 77
HphI GGTGA 5 cut(s) 197, 494, 564, 574, 812
Hpy166II GTNNAC 4 cut(s) 47, 374, 690, 844
Hpy188I TCNGA 5 cut(s) 345, 384, 594, 891, 911
Hpy188III TCNNGA 3 cut(s) 25, 223, 356
Hpy8I GTNNAC 4 cut(s) 47, 374, 690, 844
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 26, 131, 589
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 374, 690, 757
HpyF10VI GCNNNNNNNGC 3 cut(s) 427, 659, 932
HpyF3I CTNAG 4 cut(s) 342, 377, 488, 682
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 6 cut(s) 110, 150, 159, 428, 537, 650
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 4 cut(s) 258, 472, 493, 766
MabI ACCWGGT 1 cut(s) 916
MaeI CTAG 2 cut(s) 123, 797
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 4 cut(s) 299, 570, 631, 829
MalI GATC 4 cut(s) 260, 474, 495, 768
MboI GATC 4 cut(s) 258, 472, 493, 766
MboII GAAGA 1 cut(s) 809
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 3 cut(s) 104, 376, 692
MluCI AATT 2 cut(s) 523, 850
MlyI GAGTC 3 cut(s) 30, 228, 388
MnlI CCTC 3 cut(s) 535, 558, 598
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 1 cut(s) 825
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 4 cut(s) 171, 183, 858, 918
MvaI CCWGG 4 cut(s) 171, 183, 858, 918
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 3 cut(s) 427, 659, 932
NdeII GATC 4 cut(s) 258, 472, 493, 766
NheI GCTAGC 1 cut(s) 796
NlaIII CATG 6 cut(s) 110, 150, 159, 428, 537, 650
NmuCI GTSAC 3 cut(s) 299, 570, 829
NspI RCATGY 1 cut(s) 650
OliI CACNNNNGTG 1 cut(s) 825
PaeI GCATGC 1 cut(s) 650
PceI AGGCCT 1 cut(s) 414
PfeI GAWTC 2 cut(s) 119, 202
PkrI GCNGC 6 cut(s) 322, 403, 420, 557, 652, 934
PleI GAGTC 3 cut(s) 29, 227, 387
PpsI GAGTC 3 cut(s) 29, 227, 387
PsiI TTATAA 1 cut(s) 528
Psp6I CCWGG 4 cut(s) 169, 181, 856, 916
PspGI CCWGG 4 cut(s) 169, 181, 856, 916
PspPI GGNCC 3 cut(s) 53, 785, 860
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 2 cut(s) 42, 809
RsaNI GTAC 2 cut(s) 41, 808
RseI CAYNNNNRTG 1 cut(s) 825
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 6 cut(s) 321, 402, 419, 556, 651, 933
Sau3AI GATC 4 cut(s) 258, 472, 493, 766
Sau96I GGNCC 3 cut(s) 53, 785, 860
SchI GAGTC 3 cut(s) 30, 228, 388
ScrFI CCNGG 4 cut(s) 171, 183, 858, 918
SduI GDGCHC 3 cut(s) 104, 376, 692
SexAI ACCWGGT 1 cut(s) 916
SfcI CTRYAG 1 cut(s) 639
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SphI GCATGC 1 cut(s) 650
Sse9I AATT 2 cut(s) 523, 850
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 8 cut(s) 104, 304, 321, 401, 419, 555, 650, 933
SspMI CTAG 2 cut(s) 123, 797
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 169, 181, 856, 916
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 222, 496
TasI AATT 2 cut(s) 523, 850
TatI WGTACW 1 cut(s) 807
TauI GCSGC 6 cut(s) 323, 404, 421, 558, 653, 935
TfiI GAWTC 2 cut(s) 119, 202
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 2 cut(s) 139, 381
TseFI GTSAC 3 cut(s) 299, 570, 829
Tsp45I GTSAC 3 cut(s) 299, 570, 829
TspDTI ATGAA 3 cut(s) 17, 45, 123
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 139, 381
VneI GTGCAC 2 cut(s) 372, 688
VpaK11BI GGWCC 1 cut(s) 785
XceI RCATGY 1 cut(s) 650
XspI CTAG 2 cut(s) 123, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.