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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 3 cut(s) | 15, 48, 183 |
| AcsI | RAATTY | 1 cut(s) | 547 |
| AcuI | CTGAAG | 2 cut(s) | 128, 569 |
| AfaI | GTAC | 1 cut(s) | 601 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 365, 366, 558 |
| AflII | CTTAAG | 1 cut(s) | 614 |
| AgsI | TTSAA | 6 cut(s) | 142, 203, 407, 448, 485, 544 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 335, 367 |
| AluBI | AGCT | 5 cut(s) | 250, 284, 478, 611, 629 |
| AluI | AGCT | 5 cut(s) | 250, 284, 478, 611, 629 |
| Alw21I | GWGCWC | 1 cut(s) | 613 |
| Alw26I | GTCTC | 3 cut(s) | 307, 405, 451 |
| Ama87I | CYCGRG | 1 cut(s) | 359 |
| AoxI | GGCC | 7 cut(s) | 15, 48, 160, 183, 261, 348, 534 |
| ApoI | RAATTY | 1 cut(s) | 547 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 477 |
| AspA2I | CCTAGG | 1 cut(s) | 557 |
| AspS9I | GGNCC | 1 cut(s) | 262 |
| AvaI | CYCGRG | 1 cut(s) | 359 |
| AvrII | CCTAGG | 1 cut(s) | 557 |
| BalI | TGGCCA | 1 cut(s) | 185 |
| BanII | GRGCYC | 2 cut(s) | 106, 613 |
| BauI | CACGAG | 1 cut(s) | 276 |
| Bbv12I | GWGCWC | 1 cut(s) | 613 |
| BccI | CCATC | 2 cut(s) | 92, 273 |
| BcoDI | GTCTC | 3 cut(s) | 307, 405, 451 |
| BfaI | CTAG | 2 cut(s) | 251, 558 |
| BfrI | CTTAAG | 1 cut(s) | 614 |
| BlnI | CCTAGG | 1 cut(s) | 557 |
| BmeT110I | CYCGRG | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 1 cut(s) | 262 |
| BmiI | GGNNCC | 1 cut(s) | 357 |
| BmsI | GCATC | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 1 cut(s) | 593 |
| BsaJI | CCNNGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 365, 366, 558 |
| Bse1I | ACTGG | 1 cut(s) | 598 |
| BseDI | CCNNGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 365, 366, 558 |
| BseMII | CTCAG | 1 cut(s) | 621 |
| BseNI | ACTGG | 1 cut(s) | 598 |
| BseX3I | CGGCCG | 1 cut(s) | 15 |
| Bsh1285I | CGRYCG | 1 cut(s) | 18 |
| BshFI | GGCC | 7 cut(s) | 17, 50, 162, 185, 263, 350, 536 |
| BsiEI | CGRYCG | 1 cut(s) | 18 |
| BsiHKAI | GWGCWC | 1 cut(s) | 613 |
| BsiHKCI | CYCGRG | 1 cut(s) | 359 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 365, 366, 558 |
| BsmAI | GTCTC | 3 cut(s) | 307, 405, 451 |
| BsmI | GAATGC | 1 cut(s) | 44 |
| BsnI | GGCC | 7 cut(s) | 17, 50, 162, 185, 263, 350, 536 |
| BsoBI | CYCGRG | 1 cut(s) | 359 |
| Bsp1286I | GDGCHC | 2 cut(s) | 106, 613 |
| BspANI | GGCC | 7 cut(s) | 17, 50, 162, 185, 263, 350, 536 |
| BspCNI | CTCAG | 1 cut(s) | 622 |
| BspLI | GGNNCC | 1 cut(s) | 357 |
| BspTI | CTTAAG | 1 cut(s) | 614 |
| BsrI | ACTGG | 1 cut(s) | 598 |
| BssECI | CCNNGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| BssSI | CACGAG | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| Bst2BI | CACGAG | 1 cut(s) | 276 |
| BstAFI | CTTAAG | 1 cut(s) | 614 |
| BstDEI | CTNAG | 1 cut(s) | 630 |
| BstMAI | GTCTC | 3 cut(s) | 307, 405, 451 |
| BstMCI | CGRYCG | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 617, 626 |
| BstZI | CGGCCG | 1 cut(s) | 15 |
| BsuRI | GGCC | 7 cut(s) | 17, 50, 162, 185, 263, 350, 536 |
| BtsI | GCAGTG | 1 cut(s) | 503 |
| BtsIMutI | CAGTG | 2 cut(s) | 503, 591 |
| Cfr13I | GGNCC | 1 cut(s) | 262 |
| Csp6I | GTAC | 1 cut(s) | 600 |
| CviAII | CATG | 1 cut(s) | 187 |
| CviQI | GTAC | 1 cut(s) | 600 |
| DdeI | CTNAG | 1 cut(s) | 630 |
| EaeI | YGGCCR | 3 cut(s) | 15, 48, 183 |
| EagI | CGGCCG | 1 cut(s) | 15 |
| Ecl136II | GAGCTC | 1 cut(s) | 611 |
| EclXI | CGGCCG | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| Eco147I | AGGCCT | 1 cut(s) | 350 |
| Eco24I | GRGCYC | 2 cut(s) | 106, 613 |
| Eco52I | CGGCCG | 1 cut(s) | 15 |
| Eco53kI | GAGCTC | 1 cut(s) | 611 |
| Eco57I | CTGAAG | 2 cut(s) | 128, 569 |
| Eco88I | CYCGRG | 1 cut(s) | 359 |
| EcoICRI | GAGCTC | 1 cut(s) | 611 |
| EcoT14I | CCWWGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| EcoT38I | GRGCYC | 2 cut(s) | 106, 613 |
| ErhI | CCWWGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| FaeI | CATG | 1 cut(s) | 190 |
| FaiI | YATR | 3 cut(s) | 188, 377, 566 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 335, 367 |
| FatI | CATG | 1 cut(s) | 186 |
| FriOI | GRGCYC | 2 cut(s) | 106, 613 |
| FspBI | CTAG | 2 cut(s) | 251, 558 |
| HaeIII | GGCC | 7 cut(s) | 17, 50, 162, 185, 263, 350, 536 |
| Hin1II | CATG | 1 cut(s) | 190 |
| HindIII | AAGCTT | 1 cut(s) | 476 |
| Hpy188I | TCNGA | 2 cut(s) | 108, 553 |
| Hpy188III | TCNNGA | 3 cut(s) | 359, 404, 587 |
| HpyAV | CCTTC | 5 cut(s) | 103, 231, 340, 401, 593 |
| HpyCH4V | TGCA | 2 cut(s) | 218, 568 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 617, 626 |
| HpyF3I | CTNAG | 1 cut(s) | 630 |
| Hsp92II | CATG | 1 cut(s) | 190 |
| LmnI | GCTCC | 2 cut(s) | 379, 608 |
| LpnPI | CCDG | 5 cut(s) | 48, 144, 270, 572, 579 |
| LweI | GCATC | 1 cut(s) | 10 |
| MaeI | CTAG | 2 cut(s) | 251, 558 |
| MaeIII | GTNAC | 4 cut(s) | 60, 195, 229, 578 |
| MboII | GAAGA | 3 cut(s) | 347, 355, 473 |
| MfeI | CAATTG | 1 cut(s) | 434 |
| MhlI | GDGCHC | 2 cut(s) | 106, 613 |
| MlsI | TGGCCA | 1 cut(s) | 185 |
| MluCI | AATT | 4 cut(s) | 93, 434, 539, 547 |
| MluNI | TGGCCA | 1 cut(s) | 185 |
| MmeI | TCCRAC | 1 cut(s) | 405 |
| MnlI | CCTC | 4 cut(s) | 79, 82, 247, 526 |
| Mox20I | TGGCCA | 1 cut(s) | 185 |
| MroXI | GAANNNNTTC | 1 cut(s) | 477 |
| MscI | TGGCCA | 1 cut(s) | 185 |
| MseI | TTAA | 1 cut(s) | 615 |
| MslI | CAYNNNNRTG | 2 cut(s) | 37, 191 |
| Msp20I | TGGCCA | 1 cut(s) | 185 |
| MspCI | CTTAAG | 1 cut(s) | 614 |
| MunI | CAATTG | 1 cut(s) | 434 |
| Mva1269I | GAATGC | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 617, 626 |
| NlaIII | CATG | 1 cut(s) | 190 |
| NlaIV | GGNNCC | 1 cut(s) | 357 |
| NmeAIII | GCCGAG | 1 cut(s) | 26 |
| NmuCI | GTSAC | 1 cut(s) | 578 |
| PceI | AGGCCT | 1 cut(s) | 350 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 62 |
| PctI | GAATGC | 1 cut(s) | 44 |
| PdmI | GAANNNNTTC | 1 cut(s) | 477 |
| Psp124BI | GAGCTC | 1 cut(s) | 613 |
| PspN4I | GGNNCC | 1 cut(s) | 357 |
| PspPI | GGNCC | 1 cut(s) | 262 |
| RsaI | GTAC | 1 cut(s) | 601 |
| RsaNI | GTAC | 1 cut(s) | 600 |
| RseI | CAYNNNNRTG | 2 cut(s) | 37, 191 |
| SacI | GAGCTC | 1 cut(s) | 613 |
| SaqAI | TTAA | 1 cut(s) | 615 |
| Sau96I | GGNCC | 1 cut(s) | 262 |
| SduI | GDGCHC | 2 cut(s) | 106, 613 |
| SfaNI | GCATC | 1 cut(s) | 10 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 37, 191 |
| SmlI | CTYRAG | 2 cut(s) | 572, 614 |
| SmoI | CTYRAG | 2 cut(s) | 572, 614 |
| Sse9I | AATT | 4 cut(s) | 93, 434, 539, 547 |
| SseBI | AGGCCT | 1 cut(s) | 350 |
| SspMI | CTAG | 2 cut(s) | 251, 558 |
| SstI | GAGCTC | 1 cut(s) | 613 |
| StuI | AGGCCT | 1 cut(s) | 350 |
| StyI | CCWWGG | 5 cut(s) | 225, 351, 511, 557, 603 |
| TasI | AATT | 4 cut(s) | 93, 434, 539, 547 |
| Tru1I | TTAA | 1 cut(s) | 615 |
| Tru9I | TTAA | 1 cut(s) | 615 |
| TscAI | CASTG | 2 cut(s) | 503, 598 |
| TseFI | GTSAC | 1 cut(s) | 578 |
| Tsp45I | GTSAC | 1 cut(s) | 578 |
| TspDTI | ATGAA | 3 cut(s) | 135, 203, 356 |
| TspRI | CASTG | 2 cut(s) | 503, 598 |
| Vha464I | CTTAAG | 1 cut(s) | 614 |
| XapI | RAATTY | 1 cut(s) | 547 |
| XmaJI | CCTAGG | 1 cut(s) | 557 |
| XmnI | GAANNNNTTC | 1 cut(s) | 477 |
| XspI | CTAG | 2 cut(s) | 251, 558 |